Wall clock time and date at job start Tue Mar 31 2020 10:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.87927 * 2 1 4 4 C 1.54314 * 109.88456 * 238.80257 * 2 1 3 5 5 C 1.55141 * 103.02085 * 262.87717 * 4 2 1 6 6 H 1.09001 * 110.98948 * 82.43526 * 5 4 2 7 7 N 1.46904 * 110.99199 * 206.25634 * 5 4 2 8 8 C 1.46902 * 110.99817 * 204.99635 * 7 5 4 9 9 C 1.52994 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47232 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47295 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99883 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00187 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00287 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00159 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46984 * 60.00421 * 15 13 11 17 17 H 1.48503 * 109.46965 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47190 * 300.00678 * 15 13 11 19 19 C 1.54903 * 101.65159 * 324.35076 * 5 4 2 20 20 N 1.47436 * 109.88654 * 121.03527 * 2 1 3 21 21 C 1.46909 * 110.99974 * 242.65992 * 20 2 1 22 22 C 1.50692 * 109.47448 * 171.01695 * 21 20 2 23 23 C 1.38241 * 119.99701 * 269.72904 * 22 21 20 24 24 C 1.38235 * 119.99773 * 179.74339 * 23 22 21 25 25 C 1.38239 * 120.00065 * 0.52620 * 24 23 22 26 26 C 1.38237 * 119.99828 * 359.74510 * 25 24 23 27 27 C 1.38231 * 120.00526 * 89.99783 * 22 21 20 28 28 H 1.08999 * 109.46877 * 298.96776 * 1 2 3 29 29 H 1.09004 * 109.46992 * 58.96319 * 1 2 3 30 30 H 1.08998 * 109.47672 * 178.96771 * 1 2 3 31 31 H 1.09006 * 109.47277 * 175.28355 * 3 2 1 32 32 H 1.08997 * 109.47269 * 295.27933 * 3 2 1 33 33 H 1.09001 * 109.47284 * 55.28198 * 3 2 1 34 34 H 1.09004 * 110.71026 * 21.25789 * 4 2 1 35 35 H 1.09005 * 110.70622 * 144.49485 * 4 2 1 36 36 H 1.00891 * 111.00090 * 328.95307 * 7 5 4 37 37 H 1.09001 * 109.47511 * 300.00570 * 8 7 5 38 38 H 1.09009 * 109.47004 * 60.00143 * 8 7 5 39 39 H 1.09001 * 109.47404 * 300.00600 * 9 8 7 40 40 H 1.09002 * 109.47463 * 60.00247 * 9 8 7 41 41 H 1.08990 * 109.47052 * 300.00025 * 10 9 8 42 42 H 1.09005 * 109.46791 * 60.00611 * 10 9 8 43 43 H 0.96997 * 120.00464 * 179.97438 * 14 13 11 44 44 H 1.09005 * 110.37107 * 278.23776 * 19 5 4 45 45 H 1.08996 * 110.37526 * 155.89733 * 19 5 4 46 46 H 1.09004 * 109.46811 * 291.01502 * 21 20 2 47 47 H 1.08997 * 109.46952 * 51.01242 * 21 20 2 48 48 H 1.07997 * 119.99961 * 359.97438 * 23 22 21 49 49 H 1.07997 * 119.99860 * 180.29678 * 24 23 22 50 50 H 1.07998 * 120.00141 * 179.77123 * 25 24 23 51 51 H 1.08001 * 119.99690 * 179.97438 * 26 25 24 52 52 H 1.08005 * 119.99798 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0503 1.4388 0.0000 4 6 2.0549 -0.7517 -1.2413 5 6 2.3500 -2.1719 -0.6910 6 1 1.4421 -2.7740 -0.6574 7 7 3.3916 -2.8378 -1.4846 8 6 3.2732 -4.2989 -1.3884 9 6 4.3726 -4.9558 -2.2254 10 6 4.2489 -6.4775 -2.1258 11 6 5.3314 -7.1246 -2.9507 12 1 6.0373 -6.5117 -3.4916 13 6 5.4213 -8.4989 -3.0142 14 7 4.5621 -9.2453 -2.3552 15 14 6.7637 -9.3010 -4.0361 16 1 8.0929 -8.8777 -3.5272 17 1 6.6435 -10.7780 -3.9395 18 1 6.6213 -8.8849 -5.4545 19 6 2.8585 -1.8545 0.7374 20 7 2.0315 -0.7148 1.1880 21 6 2.8030 0.1843 2.0567 22 6 3.1099 -0.5139 3.3564 23 6 2.2352 -0.4074 4.4215 24 6 2.5141 -1.0522 5.6120 25 6 3.6731 -1.7946 5.7410 26 6 4.5505 -1.8965 4.6776 27 6 4.2688 -1.2563 3.4853 28 1 -0.3633 0.4977 0.8991 29 1 -0.3633 0.5299 -0.8806 30 1 -0.3634 -1.0274 -0.0185 31 1 3.1370 1.4322 0.0845 32 1 1.7611 1.9297 -0.9292 33 1 1.6234 1.9795 0.8447 34 1 1.2924 -0.7906 -2.0193 35 1 2.9665 -0.2866 -1.6166 36 1 3.3621 -2.5351 -2.4466 37 1 3.3781 -4.6042 -0.3473 38 1 2.2973 -4.6096 -1.7616 39 1 4.2681 -4.6504 -3.2666 40 1 5.3483 -4.6450 -1.8519 41 1 4.3532 -6.7831 -1.0849 42 1 3.2732 -6.7880 -2.4997 43 1 4.6251 -10.2121 -2.4000 44 1 3.9112 -1.5728 0.7115 45 1 2.7105 -2.7131 1.3923 46 1 3.7351 0.4566 1.5616 47 1 2.2212 1.0842 2.2562 48 1 1.3321 0.1766 4.3223 49 1 1.8284 -0.9729 6.4426 50 1 3.8928 -2.2953 6.6723 51 1 5.4562 -2.4762 4.7785 52 1 4.9545 -1.3356 2.6547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090184906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:06 Heat of formation + Delta-G solvation = 17.254406 kcal Electronic energy + Delta-G solvation = -26414.325366 eV Core-core repulsion = 22991.705610 eV Total energy + Delta-G solvation = -3422.619756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42564 -38.94413 -36.21112 -33.78517 -33.35383 -31.91902 -30.99728 -30.62623 -29.26775 -27.63825 -25.97972 -25.64272 -24.46456 -22.71142 -22.45166 -21.25702 -20.72152 -19.94966 -18.89571 -16.91355 -16.33899 -16.09441 -16.02407 -15.50493 -15.23874 -14.89809 -14.55159 -14.44652 -13.99387 -13.62918 -13.54706 -13.38774 -13.30920 -13.25229 -12.88017 -12.59098 -12.34156 -12.27140 -11.95017 -11.85168 -11.63348 -11.47388 -11.37388 -11.10718 -11.05172 -10.94697 -10.85649 -10.76896 -10.63290 -10.52095 -10.43737 -9.67542 -9.30964 -9.04202 -9.00222 -8.89244 -8.42775 -8.31974 -8.16455 -5.97117 -3.99377 1.23104 1.32051 3.35080 3.39164 3.41858 3.52229 3.90955 4.31535 4.43129 4.48793 4.59889 4.70144 4.72638 4.81408 4.91407 4.98708 5.03845 5.09405 5.21346 5.27110 5.36447 5.38431 5.42161 5.42865 5.49659 5.55344 5.60289 5.70816 5.75920 5.79535 5.81267 5.85351 5.88680 5.94092 5.95253 6.05734 6.07951 6.22184 6.34533 6.35869 6.42379 6.50948 6.73423 6.76336 6.88235 6.94055 6.98317 7.15700 7.37035 7.62277 7.70945 7.86365 8.03305 8.46395 9.07677 9.64431 11.14309 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.002652 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.523806 B =10553.952697 C =12219.917850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.097 3.903 3 C -0.164 4.164 4 C -0.136 4.136 5 C 0.076 3.924 6 H 0.058 0.942 7 N -0.682 5.682 8 C 0.060 3.940 9 C -0.106 4.106 10 C 0.023 3.977 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.057 3.943 20 N -0.515 5.515 21 C 0.088 3.912 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.110 4.110 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.339 0.661 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.261 0.739 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.085 0.915 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 23.745 11.938 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.007 3.993 3 C -0.221 4.221 4 C -0.175 4.175 5 C -0.035 4.035 6 H 0.076 0.924 7 N -0.313 5.313 8 C -0.068 4.068 9 C -0.144 4.144 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.071 4.071 20 N -0.239 5.239 21 C -0.039 4.039 22 C -0.077 4.077 23 C -0.120 4.120 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.129 4.129 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.119 23.423 12.754 27.604 hybrid contribution 0.612 -0.569 -1.493 1.711 sum -6.507 22.854 11.261 26.296 Atomic orbital electron populations 1.21751 0.93416 1.02176 1.01102 1.21664 0.95936 0.92566 0.89118 1.22389 1.01316 0.96133 1.02306 1.23071 1.01494 0.95581 0.97351 1.22611 0.93293 0.93726 0.93836 0.92361 1.60515 1.47931 1.07436 1.15452 1.22179 0.98340 0.85178 1.01149 1.21618 0.96798 0.98596 0.97415 1.19053 0.96963 0.88321 0.97161 1.21221 1.14001 0.91372 1.29193 0.92755 1.25028 0.96120 0.97540 0.95811 1.69955 1.36346 1.04960 1.42337 0.86661 0.82437 0.78146 0.80771 1.20223 1.21305 1.20281 1.23027 0.95777 0.93475 0.94788 1.63640 1.35962 1.08455 1.15824 1.21307 0.96901 0.95054 0.90677 1.19782 0.94553 0.98276 0.95096 1.20969 0.98649 0.99639 0.92752 1.21123 0.97344 0.98031 0.97714 1.21146 0.94840 0.99286 0.98852 1.21157 0.99706 0.99526 0.93353 1.21127 0.97076 0.97037 0.97626 0.92523 0.92716 0.92218 0.92167 0.92072 0.91897 0.90855 0.90457 0.84255 0.91486 0.95695 0.93717 0.92627 0.96587 0.96843 0.92978 0.92449 0.90574 0.93561 0.89724 0.86290 0.86332 0.86339 0.86090 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.70 37.16 0.32 -0.78 16 2 C 0.10 0.90 1.15 -130.62 -0.15 0.75 16 3 C -0.16 -1.26 7.14 37.16 0.27 -0.99 16 4 C -0.14 -1.38 5.42 -24.91 -0.13 -1.52 16 5 C 0.08 0.96 3.38 -65.57 -0.22 0.74 16 6 H 0.06 0.80 7.83 -51.93 -0.41 0.40 16 7 N -0.68 -9.89 6.41 -104.47 -0.67 -10.56 16 8 C 0.06 1.05 5.55 -3.83 -0.02 1.03 16 9 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 12 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 15 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.06 0.72 5.27 -2.30 -0.01 0.71 16 20 N -0.51 -5.51 4.79 -217.18 -1.04 -6.55 16 21 C 0.09 0.84 3.83 -4.97 -0.02 0.82 16 22 C -0.08 -0.80 5.08 -104.63 -0.53 -1.34 16 23 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.11 -1.20 8.89 -39.59 -0.35 -1.55 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.48 6.61 -51.93 -0.34 0.14 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.44 6.72 -51.93 -0.35 0.09 16 34 H 0.07 0.69 7.83 -51.93 -0.41 0.29 16 35 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 36 H 0.34 4.59 8.44 -39.30 -0.33 4.25 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.44 8.09 -51.92 -0.42 0.02 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 0.76 6.93 -51.93 -0.36 0.40 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.45 6.62 -51.93 -0.34 0.10 16 47 H 0.08 0.71 6.20 -51.93 -0.32 0.38 16 48 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 51 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 52 H 0.12 1.27 7.43 -52.48 -0.39 0.88 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -30.60 404.79 -12.56 -43.16 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -9.54 Total: 1.56 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -3.13 Total: -24.01 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.97 Total: -43.76 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.60 -12.56 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090184906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.418 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds