Wall clock time and date at job start Tue Mar 31 2020 10:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.87927 * 2 1 4 4 C 1.54314 * 109.88456 * 238.80257 * 2 1 3 5 5 C 1.55141 * 103.02085 * 262.87717 * 4 2 1 6 6 H 1.09001 * 110.98948 * 82.43526 * 5 4 2 7 7 N 1.46904 * 110.99199 * 206.25634 * 5 4 2 8 8 C 1.46902 * 110.99817 * 204.99635 * 7 5 4 9 9 C 1.52994 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47232 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47295 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99883 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00187 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00287 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00159 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46984 * 60.00421 * 15 13 11 17 17 H 1.48503 * 109.46965 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47190 * 300.00678 * 15 13 11 19 19 C 1.54903 * 101.65159 * 324.35076 * 5 4 2 20 20 N 1.47436 * 109.88654 * 121.03527 * 2 1 3 21 21 C 1.46909 * 110.99974 * 242.65992 * 20 2 1 22 22 C 1.50692 * 109.47448 * 171.01695 * 21 20 2 23 23 C 1.38241 * 119.99701 * 269.72904 * 22 21 20 24 24 C 1.38235 * 119.99773 * 179.74339 * 23 22 21 25 25 C 1.38239 * 120.00065 * 0.52620 * 24 23 22 26 26 C 1.38237 * 119.99828 * 359.74510 * 25 24 23 27 27 C 1.38231 * 120.00526 * 89.99783 * 22 21 20 28 28 H 1.08999 * 109.46877 * 298.96776 * 1 2 3 29 29 H 1.09004 * 109.46992 * 58.96319 * 1 2 3 30 30 H 1.08998 * 109.47672 * 178.96771 * 1 2 3 31 31 H 1.09006 * 109.47277 * 175.28355 * 3 2 1 32 32 H 1.08997 * 109.47269 * 295.27933 * 3 2 1 33 33 H 1.09001 * 109.47284 * 55.28198 * 3 2 1 34 34 H 1.09004 * 110.71026 * 21.25789 * 4 2 1 35 35 H 1.09005 * 110.70622 * 144.49485 * 4 2 1 36 36 H 1.00891 * 111.00090 * 328.95307 * 7 5 4 37 37 H 1.09001 * 109.47511 * 300.00570 * 8 7 5 38 38 H 1.09009 * 109.47004 * 60.00143 * 8 7 5 39 39 H 1.09001 * 109.47404 * 300.00600 * 9 8 7 40 40 H 1.09002 * 109.47463 * 60.00247 * 9 8 7 41 41 H 1.08990 * 109.47052 * 300.00025 * 10 9 8 42 42 H 1.09005 * 109.46791 * 60.00611 * 10 9 8 43 43 H 0.96997 * 120.00464 * 179.97438 * 14 13 11 44 44 H 1.09005 * 110.37107 * 278.23776 * 19 5 4 45 45 H 1.08996 * 110.37526 * 155.89733 * 19 5 4 46 46 H 1.09004 * 109.46811 * 291.01502 * 21 20 2 47 47 H 1.08997 * 109.46952 * 51.01242 * 21 20 2 48 48 H 1.07997 * 119.99961 * 359.97438 * 23 22 21 49 49 H 1.07997 * 119.99860 * 180.29678 * 24 23 22 50 50 H 1.07998 * 120.00141 * 179.77123 * 25 24 23 51 51 H 1.08001 * 119.99690 * 179.97438 * 26 25 24 52 52 H 1.08005 * 119.99798 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0503 1.4388 0.0000 4 6 2.0549 -0.7517 -1.2413 5 6 2.3500 -2.1719 -0.6910 6 1 1.4421 -2.7740 -0.6574 7 7 3.3916 -2.8378 -1.4846 8 6 3.2732 -4.2989 -1.3884 9 6 4.3726 -4.9558 -2.2254 10 6 4.2489 -6.4775 -2.1258 11 6 5.3314 -7.1246 -2.9507 12 1 6.0373 -6.5117 -3.4916 13 6 5.4213 -8.4989 -3.0142 14 7 4.5621 -9.2453 -2.3552 15 14 6.7637 -9.3010 -4.0361 16 1 8.0929 -8.8777 -3.5272 17 1 6.6435 -10.7780 -3.9395 18 1 6.6213 -8.8849 -5.4545 19 6 2.8585 -1.8545 0.7374 20 7 2.0315 -0.7148 1.1880 21 6 2.8030 0.1843 2.0567 22 6 3.1099 -0.5139 3.3564 23 6 2.2352 -0.4074 4.4215 24 6 2.5141 -1.0522 5.6120 25 6 3.6731 -1.7946 5.7410 26 6 4.5505 -1.8965 4.6776 27 6 4.2688 -1.2563 3.4853 28 1 -0.3633 0.4977 0.8991 29 1 -0.3633 0.5299 -0.8806 30 1 -0.3634 -1.0274 -0.0185 31 1 3.1370 1.4322 0.0845 32 1 1.7611 1.9297 -0.9292 33 1 1.6234 1.9795 0.8447 34 1 1.2924 -0.7906 -2.0193 35 1 2.9665 -0.2866 -1.6166 36 1 3.3621 -2.5351 -2.4466 37 1 3.3781 -4.6042 -0.3473 38 1 2.2973 -4.6096 -1.7616 39 1 4.2681 -4.6504 -3.2666 40 1 5.3483 -4.6450 -1.8519 41 1 4.3532 -6.7831 -1.0849 42 1 3.2732 -6.7880 -2.4997 43 1 4.6251 -10.2121 -2.4000 44 1 3.9112 -1.5728 0.7115 45 1 2.7105 -2.7131 1.3923 46 1 3.7351 0.4566 1.5616 47 1 2.2212 1.0842 2.2562 48 1 1.3321 0.1766 4.3223 49 1 1.8284 -0.9729 6.4426 50 1 3.8928 -2.2953 6.6723 51 1 5.4562 -2.4762 4.7785 52 1 4.9545 -1.3356 2.6547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090184906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:05 Heat of formation + Delta-G solvation = 0.086071 kcal Electronic energy + Delta-G solvation = -26415.069841 eV Core-core repulsion = 22991.705610 eV Total energy + Delta-G solvation = -3423.364231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26151 -39.72984 -37.56232 -35.54369 -34.29043 -33.50635 -31.86882 -31.62265 -30.45351 -28.46201 -27.59154 -26.52855 -25.42854 -24.25408 -23.44772 -22.12911 -22.02601 -21.39339 -19.68872 -18.49249 -17.68198 -17.11529 -16.94806 -16.56055 -16.34978 -16.25174 -15.96536 -15.44667 -15.17091 -14.65655 -14.52226 -14.37850 -14.30720 -14.13907 -14.06770 -13.68672 -13.56166 -13.42930 -13.25780 -12.97924 -12.76471 -12.58348 -12.51711 -12.41498 -12.33497 -12.18966 -11.94908 -11.87652 -11.74106 -11.64687 -11.55344 -11.49188 -11.35209 -11.04329 -10.56104 -9.77811 -9.67779 -9.47442 -9.19453 -8.20859 -6.32459 0.46076 0.54465 1.39136 1.42677 1.50637 2.40205 2.69356 3.01662 3.12019 3.37302 3.55669 3.69627 3.89754 3.97078 4.06602 4.17653 4.18775 4.21292 4.27876 4.31272 4.34714 4.43256 4.44053 4.61593 4.65340 4.68563 4.69947 4.79493 4.81070 4.85825 4.87648 4.95864 4.96968 5.03211 5.08502 5.09793 5.13728 5.16667 5.20592 5.23084 5.28039 5.49098 5.50614 5.60134 5.65983 5.72784 5.73119 5.84278 5.96001 6.12307 6.13430 6.20532 6.25671 6.46521 6.84387 7.36899 8.91020 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.002652 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.523806 B =10553.952697 C =12219.917850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.095 3.905 3 C -0.159 4.159 4 C -0.128 4.128 5 C 0.075 3.925 6 H 0.047 0.953 7 N -0.679 5.679 8 C 0.075 3.925 9 C -0.090 4.090 10 C 0.026 3.974 11 C -0.545 4.545 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.066 3.934 20 N -0.519 5.519 21 C 0.092 3.908 22 C -0.088 4.088 23 C -0.109 4.109 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.135 4.135 27 C -0.127 4.127 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.348 0.652 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.053 0.947 40 H 0.052 0.948 41 H -0.011 1.011 42 H -0.010 1.010 43 H 0.264 0.736 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.102 0.898 48 H 0.134 0.866 49 H 0.141 0.859 50 H 0.137 0.863 51 H 0.128 0.872 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 25.577 11.460 28.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.006 3.994 3 C -0.217 4.217 4 C -0.166 4.166 5 C -0.036 4.036 6 H 0.065 0.935 7 N -0.310 5.310 8 C -0.054 4.054 9 C -0.128 4.128 10 C -0.012 4.012 11 C -0.582 4.582 12 H 0.079 0.921 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.062 4.062 20 N -0.244 5.244 21 C -0.035 4.035 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.153 4.153 27 C -0.146 4.146 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.167 0.833 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.007 0.993 42 H 0.008 0.992 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.120 0.880 48 H 0.152 0.848 49 H 0.159 0.841 50 H 0.155 0.845 51 H 0.146 0.854 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.150 25.286 12.272 29.002 hybrid contribution 0.580 -1.139 -1.285 1.812 sum -6.571 24.147 10.988 27.331 Atomic orbital electron populations 1.21734 0.92762 1.01486 1.02143 1.21764 0.96368 0.93386 0.87917 1.22343 1.01039 0.94835 1.03461 1.23047 1.02044 0.93527 0.98030 1.22613 0.92113 0.94974 0.93895 0.93508 1.60405 1.48945 1.05329 1.16360 1.21841 0.96822 0.87131 0.99592 1.21358 0.97832 0.95058 0.98578 1.18956 0.95254 0.91997 0.94967 1.21673 1.14727 0.92173 1.29676 0.92137 1.26016 0.98685 0.98254 0.97000 1.70095 1.38262 1.05380 1.43746 0.85483 0.79197 0.77026 0.79246 1.19156 1.20766 1.19015 1.22812 0.95586 0.93604 0.94232 1.63615 1.35614 1.08530 1.16605 1.21327 0.97017 0.95162 0.89982 1.19959 0.94566 0.98441 0.95853 1.21223 0.99023 0.99810 0.92723 1.21452 0.97524 0.97374 0.98298 1.21435 0.94817 0.99347 0.99337 1.21375 1.00436 0.99857 0.93642 1.21218 0.97624 0.97937 0.97827 0.92055 0.91095 0.93785 0.92556 0.90847 0.90855 0.89695 0.90135 0.83256 0.92705 0.95964 0.92837 0.92930 0.99306 0.99169 0.92739 0.93310 0.93040 0.93687 0.88002 0.84774 0.84117 0.84529 0.85442 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.70 71.98 0.63 -1.28 16 2 C 0.09 1.59 1.15 3.87 0.00 1.60 16 3 C -0.16 -2.02 7.14 71.98 0.51 -1.51 16 4 C -0.13 -2.38 5.42 31.77 0.17 -2.21 16 5 C 0.07 1.87 3.38 46.30 0.16 2.02 16 6 H 0.05 1.30 7.83 -2.39 -0.02 1.28 16 7 N -0.68 -19.47 6.41 -484.43 -3.11 -22.58 16 8 C 0.08 2.70 5.55 86.30 0.48 3.18 16 9 C -0.09 -3.83 5.41 30.59 0.17 -3.67 16 10 C 0.03 1.41 4.97 29.85 0.15 1.56 16 11 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 14 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 15 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 C 0.07 1.69 5.27 86.77 0.46 2.15 16 20 N -0.52 -10.71 4.79 -841.03 -4.03 -14.74 16 21 C 0.09 1.67 3.83 85.55 0.33 2.00 16 22 C -0.09 -1.82 5.08 -19.87 -0.10 -1.92 16 23 C -0.11 -2.04 9.70 22.27 0.22 -1.82 16 24 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 25 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 26 C -0.14 -2.86 10.05 22.27 0.22 -2.64 16 27 C -0.13 -2.87 8.89 22.27 0.20 -2.67 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.78 6.61 -2.38 -0.02 0.76 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.80 6.72 -2.39 -0.02 0.78 16 34 H 0.08 1.41 7.83 -2.38 -0.02 1.39 16 35 H 0.08 1.48 7.86 -2.38 -0.02 1.46 16 36 H 0.35 9.00 8.44 -89.70 -0.76 8.25 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.02 0.81 8.09 -2.38 -0.02 0.79 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 43 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 44 H 0.05 1.32 6.93 -2.38 -0.02 1.30 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 0.83 6.62 -2.39 -0.02 0.82 16 47 H 0.10 1.48 6.20 -2.39 -0.01 1.47 16 48 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 49 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 50 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 51 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 52 H 0.11 2.57 7.43 -2.91 -0.02 2.55 16 Total: -1.00 -66.55 404.79 0.02 -66.54 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.11 Total: 22.42 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 4.73 Total: -40.75 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -6.85 Total: -95.21 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.55 0.02 -66.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090184906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.622 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds