Wall clock time and date at job start Tue Mar 31 2020 11:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46657 * 2 1 4 4 N 1.46906 * 109.47111 * 119.99713 * 2 1 3 5 5 C 1.46895 * 111.00160 * 276.49047 * 4 2 1 6 6 H 1.09008 * 109.47034 * 32.46230 * 5 4 2 7 7 C 1.52999 * 109.47179 * 152.46061 * 5 4 2 8 8 C 1.50703 * 109.46804 * 294.43492 * 7 5 4 9 9 H 1.07993 * 120.00559 * 4.11087 * 8 7 5 10 10 C 1.37881 * 119.99412 * 184.11580 * 8 7 5 11 11 N 1.31515 * 120.00269 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99780 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46876 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47049 * 119.99668 * 12 10 8 15 15 H 1.48493 * 109.47086 * 239.99692 * 12 10 8 16 16 C 1.50698 * 109.47382 * 272.46194 * 5 4 2 17 17 C 1.38235 * 119.99723 * 319.72613 * 16 5 4 18 18 C 1.38240 * 120.00055 * 179.80724 * 17 16 5 19 19 C 1.38230 * 119.99576 * 0.40278 * 18 17 16 20 20 C 1.38236 * 120.00519 * 359.85126 * 19 18 17 21 21 C 1.38228 * 120.00360 * 139.99732 * 16 5 4 22 22 C 1.52996 * 109.46996 * 239.99853 * 2 1 3 23 23 C 1.53120 * 109.51992 * 179.67890 * 22 2 1 24 24 C 1.53043 * 109.27843 * 182.44024 * 23 22 2 25 25 N 1.46848 * 109.52010 * 59.18363 * 24 23 22 26 26 C 1.46898 * 110.99730 * 174.16247 * 25 24 23 27 27 C 1.46847 * 111.19729 * 298.25582 * 25 24 23 28 28 C 1.53044 * 109.52237 * 61.74427 * 27 25 24 29 29 H 1.09006 * 109.47500 * 299.50954 * 1 2 3 30 30 H 1.08995 * 109.47615 * 59.51427 * 1 2 3 31 31 H 1.09000 * 109.47117 * 179.51211 * 1 2 3 32 32 H 1.00905 * 110.99482 * 40.44958 * 4 2 1 33 33 H 1.08995 * 109.46834 * 54.42989 * 7 5 4 34 34 H 1.08991 * 109.47471 * 174.43412 * 7 5 4 35 35 H 0.96998 * 119.99868 * 179.97438 * 11 10 8 36 36 H 1.08003 * 120.00299 * 359.97438 * 17 16 5 37 37 H 1.07998 * 119.99975 * 180.23247 * 18 17 16 38 38 H 1.08010 * 119.99808 * 179.83484 * 19 18 17 39 39 H 1.07999 * 120.00209 * 179.97438 * 20 19 18 40 40 H 1.08006 * 119.99907 * 359.97438 * 21 16 5 41 41 H 1.08994 * 109.52453 * 299.87167 * 22 2 1 42 42 H 1.08996 * 109.51056 * 302.38388 * 23 22 2 43 43 H 1.08997 * 109.50430 * 62.50459 * 23 22 2 44 44 H 1.08998 * 109.46342 * 299.16597 * 24 23 22 45 45 H 1.09003 * 109.46373 * 179.19826 * 24 23 22 46 46 H 1.09007 * 109.47142 * 184.20782 * 26 25 24 47 47 H 1.08997 * 109.47277 * 304.20746 * 26 25 24 48 48 H 1.08998 * 109.47728 * 64.20774 * 26 25 24 49 49 H 1.09002 * 109.46586 * 301.72773 * 27 25 24 50 50 H 1.09000 * 109.46424 * 181.75856 * 27 25 24 51 51 H 1.09000 * 109.49750 * 180.87561 * 28 27 25 52 52 H 1.08994 * 109.53430 * 60.78019 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0490 0.2136 2.3554 6 1 1.2365 0.9355 2.2718 7 6 1.8813 -0.5962 3.6426 8 6 0.5075 -1.2152 3.6712 9 1 -0.1530 -1.1031 2.8242 10 6 0.0940 -1.9245 4.7789 11 7 0.8986 -2.0613 5.8102 12 14 -1.6091 -2.6912 4.8148 13 1 -2.3126 -2.3938 3.5413 14 1 -1.4865 -4.1617 4.9815 15 1 -2.3821 -2.1270 5.9502 16 6 3.3674 0.9428 2.3888 17 6 4.5366 0.2711 2.0840 18 6 5.7456 0.9409 2.1108 19 6 5.7863 2.2802 2.4505 20 6 4.6177 2.9506 2.7604 21 6 3.4083 2.2817 2.7297 22 6 2.0399 -0.7213 -1.2492 23 6 3.5711 -0.7149 -1.2544 24 6 4.0748 -1.3837 -2.5355 25 7 3.5605 -0.6568 -3.7033 26 6 4.1347 -1.1860 -4.9475 27 6 2.0930 -0.6898 -3.7452 28 6 1.5302 -0.0004 -2.5002 29 1 -0.3634 0.5062 0.8944 30 1 -0.3634 0.5213 -0.8855 31 1 -0.3633 -1.0276 -0.0088 32 1 1.4643 -1.5117 1.3961 33 1 2.6350 -1.3828 3.6777 34 1 2.0016 0.0611 4.5037 35 1 0.6075 -2.5599 6.5896 36 1 4.5052 -0.7763 1.8223 37 1 6.6585 0.4171 1.8690 38 1 6.7312 2.8029 2.4740 39 1 4.6496 3.9969 3.0261 40 1 2.4953 2.8055 2.9717 41 1 1.6790 -1.7497 -1.2489 42 1 3.9310 0.3131 -1.2149 43 1 3.9402 -1.2639 -0.3881 44 1 3.7261 -2.4159 -2.5677 45 1 5.1646 -1.3681 -2.5491 46 1 3.7955 -0.5828 -5.7897 47 1 5.2226 -1.1502 -4.8897 48 1 3.8122 -2.2179 -5.0866 49 1 1.7536 -1.7252 -3.7718 50 1 1.7434 -0.1702 -4.6374 51 1 0.4411 -0.0387 -2.5240 52 1 1.8573 1.0391 -2.4799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:23 Heat of formation + Delta-G solvation = 6.972635 kcal Electronic energy + Delta-G solvation = -27722.818849 eV Core-core repulsion = 24299.753242 eV Total energy + Delta-G solvation = -3423.065607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.44952 -38.70752 -36.69680 -34.28727 -32.51138 -31.18499 -30.82160 -30.33285 -29.07479 -27.57227 -26.45367 -24.55129 -23.12380 -22.78112 -22.09585 -21.81401 -20.33531 -19.76611 -19.22331 -16.59957 -16.08637 -15.82354 -15.20472 -15.08270 -14.80525 -14.66591 -14.50263 -14.26911 -13.84161 -13.70056 -13.36458 -13.06801 -12.84491 -12.76615 -12.49285 -12.36529 -12.22440 -12.12190 -12.02331 -11.79515 -11.42817 -11.17950 -11.09527 -11.05367 -10.91313 -10.76015 -10.57841 -10.47606 -10.36391 -10.22431 -10.03453 -9.92381 -9.53662 -9.15310 -8.44618 -8.37514 -8.36098 -8.01242 -7.65274 -6.05703 -4.09313 1.92322 1.97583 3.26204 3.34733 3.36722 3.91332 4.33996 4.41565 4.70027 4.87827 4.96326 5.04936 5.19857 5.28938 5.32506 5.37936 5.39443 5.45256 5.49694 5.52417 5.55790 5.61924 5.67889 5.69836 5.71767 5.75316 5.88366 5.89911 5.98926 6.08583 6.11590 6.17093 6.21987 6.24075 6.28112 6.39231 6.50901 6.54056 6.64511 6.64817 6.75356 6.77486 6.97510 7.03315 7.03994 7.09029 7.27622 7.50319 7.58813 7.61488 7.93500 8.03704 8.25468 8.32559 8.96914 9.55151 11.04911 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.004614 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.447637 B = 6067.081272 C = 8075.603741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.093 3.907 3 H 0.069 0.931 4 N -0.674 5.674 5 C 0.128 3.872 6 H 0.042 0.958 7 C 0.028 3.972 8 C -0.523 4.523 9 H 0.055 0.945 10 C 0.062 3.938 11 N -0.889 5.889 12 Si 0.888 3.112 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.050 4.050 17 C -0.085 4.085 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.073 4.073 23 C -0.097 4.097 24 C 0.054 3.946 25 N -0.543 5.543 26 C 0.025 3.975 27 C 0.058 3.942 28 C -0.113 4.113 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.356 0.644 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.029 0.971 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.021 0.979 49 H 0.030 0.970 50 H 0.068 0.932 51 H 0.066 0.934 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 4.684 -16.472 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.018 4.018 3 H 0.087 0.913 4 N -0.306 5.306 5 C 0.018 3.982 6 H 0.060 0.940 7 C -0.010 4.010 8 C -0.561 4.561 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.528 5.528 12 Si 0.716 3.284 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.051 4.051 17 C -0.103 4.103 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.143 4.143 22 C -0.092 4.092 23 C -0.135 4.135 24 C -0.074 4.074 25 N -0.268 5.268 26 C -0.123 4.123 27 C -0.070 4.070 28 C -0.151 4.151 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.178 0.822 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.040 0.960 49 H 0.048 0.952 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.785 5.165 -16.389 18.475 hybrid contribution -2.172 -1.190 0.298 2.494 sum 4.614 3.975 -16.091 17.205 Atomic orbital electron populations 1.22551 0.97952 1.02004 1.01603 1.21505 0.91894 0.97654 0.90757 0.91265 1.60516 1.58018 1.09414 1.02643 1.20622 0.90785 0.93887 0.92857 0.94031 1.19263 0.96959 0.94711 0.90021 1.21189 0.99977 1.33265 1.01693 0.92656 1.24971 0.97041 0.96293 0.95664 1.69975 1.35806 1.41219 1.05772 0.86604 0.84705 0.79100 0.77976 1.19831 1.21016 1.21093 1.20205 0.96340 0.92874 0.95647 1.21005 0.91202 1.00301 0.97839 1.21104 0.97794 0.94666 1.01253 1.20949 0.97579 0.95048 1.02061 1.20954 0.92856 0.99277 1.01495 1.21034 0.97592 0.94646 1.01063 1.21118 0.95813 0.99087 0.93184 1.21488 0.94867 1.01450 0.95708 1.22194 0.99390 0.94999 0.90790 1.61959 1.06970 1.55332 1.02567 1.22337 1.00181 0.97492 0.92317 1.22074 0.87293 0.98825 0.98796 1.21696 0.99613 1.00239 0.93569 0.92305 0.92935 0.92649 0.82225 0.95732 0.95736 0.92989 0.85527 0.87038 0.87249 0.87100 0.86877 0.91876 0.91780 0.89869 0.95281 0.91242 0.91709 0.91568 0.96021 0.95213 0.91318 0.91550 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.78 37.16 0.33 -2.34 16 2 C 0.09 1.37 1.98 -67.71 -0.13 1.23 16 3 H 0.07 1.10 7.74 -51.93 -0.40 0.69 16 4 N -0.67 -11.62 4.61 -100.95 -0.47 -12.09 16 5 C 0.13 2.50 1.98 -68.87 -0.14 2.37 16 6 H 0.04 0.85 6.87 -51.92 -0.36 0.49 16 7 C 0.03 0.68 4.52 -27.88 -0.13 0.55 16 8 C -0.52 -13.69 8.18 -34.44 -0.28 -13.97 16 9 H 0.06 1.40 7.44 -52.49 -0.39 1.01 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 12 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C -0.05 -0.90 4.73 -104.63 -0.50 -1.40 16 17 C -0.09 -1.45 9.32 -39.58 -0.37 -1.82 16 18 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 19 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 20 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 21 C -0.12 -2.12 9.67 -39.59 -0.38 -2.50 16 22 C -0.07 -0.95 2.03 -90.50 -0.18 -1.13 16 23 C -0.10 -1.27 5.19 -26.65 -0.14 -1.41 16 24 C 0.05 0.63 5.46 -3.83 -0.02 0.61 16 25 N -0.54 -6.19 4.91 -242.95 -1.19 -7.38 16 26 C 0.03 0.23 9.59 60.06 0.58 0.81 16 27 C 0.06 0.63 5.46 -3.83 -0.02 0.61 16 28 C -0.11 -1.30 4.95 -26.65 -0.13 -1.43 16 29 H 0.06 0.97 7.34 -51.93 -0.38 0.58 16 30 H 0.05 0.66 6.52 -51.93 -0.34 0.32 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.36 6.81 6.96 -39.29 -0.27 6.54 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.13 2.18 7.47 -52.48 -0.39 1.79 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.11 1.83 8.04 -52.48 -0.42 1.40 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.18 7.45 -51.93 -0.39 0.79 16 44 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 46 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 47 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 48 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 51 H 0.07 0.72 6.59 -51.93 -0.34 0.38 16 52 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 401.74 15.07 6.05 6.05 Total: -1.00 -27.80 401.74 -12.28 -40.08 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -9.58 Total: 7.85 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -2.81 Total: -25.29 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.92 Total: -44.63 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -27.80 -12.28 -40.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.049 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds