Wall clock time and date at job start Tue Mar 31 2020 11:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46657 * 2 1 4 4 N 1.46906 * 109.47111 * 119.99713 * 2 1 3 5 5 C 1.46895 * 111.00160 * 276.49047 * 4 2 1 6 6 H 1.09008 * 109.47034 * 32.46230 * 5 4 2 7 7 C 1.52999 * 109.47179 * 152.46061 * 5 4 2 8 8 C 1.50703 * 109.46804 * 294.43492 * 7 5 4 9 9 H 1.07993 * 120.00559 * 4.11087 * 8 7 5 10 10 C 1.37881 * 119.99412 * 184.11580 * 8 7 5 11 11 N 1.31515 * 120.00269 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99780 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46876 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47049 * 119.99668 * 12 10 8 15 15 H 1.48493 * 109.47086 * 239.99692 * 12 10 8 16 16 C 1.50698 * 109.47382 * 272.46194 * 5 4 2 17 17 C 1.38235 * 119.99723 * 319.72613 * 16 5 4 18 18 C 1.38240 * 120.00055 * 179.80724 * 17 16 5 19 19 C 1.38230 * 119.99576 * 0.40278 * 18 17 16 20 20 C 1.38236 * 120.00519 * 359.85126 * 19 18 17 21 21 C 1.38228 * 120.00360 * 139.99732 * 16 5 4 22 22 C 1.52996 * 109.46996 * 239.99853 * 2 1 3 23 23 C 1.53120 * 109.51992 * 179.67890 * 22 2 1 24 24 C 1.53043 * 109.27843 * 182.44024 * 23 22 2 25 25 N 1.46848 * 109.52010 * 59.18363 * 24 23 22 26 26 C 1.46898 * 110.99730 * 174.16247 * 25 24 23 27 27 C 1.46847 * 111.19729 * 298.25582 * 25 24 23 28 28 C 1.53044 * 109.52237 * 61.74427 * 27 25 24 29 29 H 1.09006 * 109.47500 * 299.50954 * 1 2 3 30 30 H 1.08995 * 109.47615 * 59.51427 * 1 2 3 31 31 H 1.09000 * 109.47117 * 179.51211 * 1 2 3 32 32 H 1.00905 * 110.99482 * 40.44958 * 4 2 1 33 33 H 1.08995 * 109.46834 * 54.42989 * 7 5 4 34 34 H 1.08991 * 109.47471 * 174.43412 * 7 5 4 35 35 H 0.96998 * 119.99868 * 179.97438 * 11 10 8 36 36 H 1.08003 * 120.00299 * 359.97438 * 17 16 5 37 37 H 1.07998 * 119.99975 * 180.23247 * 18 17 16 38 38 H 1.08010 * 119.99808 * 179.83484 * 19 18 17 39 39 H 1.07999 * 120.00209 * 179.97438 * 20 19 18 40 40 H 1.08006 * 119.99907 * 359.97438 * 21 16 5 41 41 H 1.08994 * 109.52453 * 299.87167 * 22 2 1 42 42 H 1.08996 * 109.51056 * 302.38388 * 23 22 2 43 43 H 1.08997 * 109.50430 * 62.50459 * 23 22 2 44 44 H 1.08998 * 109.46342 * 299.16597 * 24 23 22 45 45 H 1.09003 * 109.46373 * 179.19826 * 24 23 22 46 46 H 1.09007 * 109.47142 * 184.20782 * 26 25 24 47 47 H 1.08997 * 109.47277 * 304.20746 * 26 25 24 48 48 H 1.08998 * 109.47728 * 64.20774 * 26 25 24 49 49 H 1.09002 * 109.46586 * 301.72773 * 27 25 24 50 50 H 1.09000 * 109.46424 * 181.75856 * 27 25 24 51 51 H 1.09000 * 109.49750 * 180.87561 * 28 27 25 52 52 H 1.08994 * 109.53430 * 60.78019 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0490 0.2136 2.3554 6 1 1.2365 0.9355 2.2718 7 6 1.8813 -0.5962 3.6426 8 6 0.5075 -1.2152 3.6712 9 1 -0.1530 -1.1031 2.8242 10 6 0.0940 -1.9245 4.7789 11 7 0.8986 -2.0613 5.8102 12 14 -1.6091 -2.6912 4.8148 13 1 -2.3126 -2.3938 3.5413 14 1 -1.4865 -4.1617 4.9815 15 1 -2.3821 -2.1270 5.9502 16 6 3.3674 0.9428 2.3888 17 6 4.5366 0.2711 2.0840 18 6 5.7456 0.9409 2.1108 19 6 5.7863 2.2802 2.4505 20 6 4.6177 2.9506 2.7604 21 6 3.4083 2.2817 2.7297 22 6 2.0399 -0.7213 -1.2492 23 6 3.5711 -0.7149 -1.2544 24 6 4.0748 -1.3837 -2.5355 25 7 3.5605 -0.6568 -3.7033 26 6 4.1347 -1.1860 -4.9475 27 6 2.0930 -0.6898 -3.7452 28 6 1.5302 -0.0004 -2.5002 29 1 -0.3634 0.5062 0.8944 30 1 -0.3634 0.5213 -0.8855 31 1 -0.3633 -1.0276 -0.0088 32 1 1.4643 -1.5117 1.3961 33 1 2.6350 -1.3828 3.6777 34 1 2.0016 0.0611 4.5037 35 1 0.6075 -2.5599 6.5896 36 1 4.5052 -0.7763 1.8223 37 1 6.6585 0.4171 1.8690 38 1 6.7312 2.8029 2.4740 39 1 4.6496 3.9969 3.0261 40 1 2.4953 2.8055 2.9717 41 1 1.6790 -1.7497 -1.2489 42 1 3.9310 0.3131 -1.2149 43 1 3.9402 -1.2639 -0.3881 44 1 3.7261 -2.4159 -2.5677 45 1 5.1646 -1.3681 -2.5491 46 1 3.7955 -0.5828 -5.7897 47 1 5.2226 -1.1502 -4.8897 48 1 3.8122 -2.2179 -5.0866 49 1 1.7536 -1.7252 -3.7718 50 1 1.7434 -0.1702 -4.6374 51 1 0.4411 -0.0387 -2.5240 52 1 1.8573 1.0391 -2.4799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090665774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:22 Heat of formation + Delta-G solvation = -7.164588 kcal Electronic energy + Delta-G solvation = -27723.431885 eV Core-core repulsion = 24299.753242 eV Total energy + Delta-G solvation = -3423.678643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63421 -39.85536 -37.95682 -35.75521 -34.33051 -32.38592 -31.82963 -31.55431 -30.59695 -29.15268 -27.38248 -26.27000 -24.15832 -23.76425 -23.63763 -23.17683 -21.50385 -21.08632 -20.41928 -18.54166 -17.46329 -16.90117 -16.56523 -16.52779 -15.98752 -15.90786 -15.71735 -15.47922 -15.01661 -14.85680 -14.63040 -14.41210 -14.17867 -14.00573 -13.82289 -13.68374 -13.45152 -13.26187 -13.21418 -13.16642 -12.92283 -12.64703 -12.46716 -12.35196 -12.26214 -12.07009 -12.02984 -11.99142 -11.74079 -11.44973 -11.34391 -11.18589 -11.03996 -10.95226 -10.57735 -9.63570 -9.37561 -9.23224 -9.09035 -8.18267 -6.28702 0.64328 0.70798 1.38237 1.39752 1.50932 2.39816 3.06705 3.07793 3.13992 3.42212 3.82194 3.97401 4.04375 4.17123 4.20850 4.29750 4.32610 4.39120 4.41907 4.44670 4.47209 4.58226 4.62272 4.65035 4.68674 4.73577 4.82267 4.84726 4.87467 4.90344 4.92930 4.98362 5.03025 5.03809 5.15924 5.18884 5.20589 5.27155 5.34352 5.44289 5.44768 5.50964 5.58779 5.64741 5.72543 5.77628 5.84683 5.95520 6.19680 6.20057 6.21865 6.31579 6.49517 6.71946 6.86627 7.40085 8.93295 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.004614 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.447637 B = 6067.081272 C = 8075.603741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.060 0.940 4 N -0.667 5.667 5 C 0.146 3.854 6 H 0.029 0.971 7 C 0.041 3.959 8 C -0.527 4.527 9 H 0.063 0.937 10 C 0.006 3.994 11 N -0.930 5.930 12 Si 0.957 3.043 13 H -0.261 1.261 14 H -0.281 1.281 15 H -0.283 1.283 16 C -0.074 4.074 17 C -0.097 4.097 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.066 4.066 23 C -0.089 4.089 24 C 0.059 3.941 25 N -0.556 5.556 26 C 0.025 3.975 27 C 0.059 3.941 28 C -0.107 4.107 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.344 0.656 33 H -0.004 1.004 34 H -0.012 1.012 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.024 0.976 49 H 0.029 0.971 50 H 0.084 0.916 51 H 0.076 0.924 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 5.387 -18.663 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 H 0.079 0.921 4 N -0.298 5.298 5 C 0.036 3.964 6 H 0.047 0.953 7 C 0.004 3.996 8 C -0.565 4.565 9 H 0.081 0.919 10 C -0.192 4.192 11 N -0.571 5.571 12 Si 0.783 3.217 13 H -0.185 1.185 14 H -0.206 1.206 15 H -0.210 1.210 16 C -0.075 4.075 17 C -0.116 4.116 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.161 4.161 22 C -0.085 4.085 23 C -0.127 4.127 24 C -0.069 4.069 25 N -0.281 5.281 26 C -0.123 4.123 27 C -0.069 4.069 28 C -0.145 4.145 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.014 0.986 34 H 0.006 0.994 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.047 0.953 50 H 0.103 0.897 51 H 0.095 0.905 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.076 5.881 -18.610 20.760 hybrid contribution -2.174 -1.351 0.974 2.739 sum 4.902 4.529 -17.636 18.857 Atomic orbital electron populations 1.22486 0.97501 1.01829 1.01707 1.21516 0.92183 0.97134 0.90388 0.92131 1.60552 1.57967 1.08690 1.02629 1.20232 0.91774 0.93084 0.91320 0.95306 1.19023 0.95601 0.93618 0.91377 1.21532 1.00604 1.32634 1.01743 0.91893 1.25847 1.01028 0.96952 0.95344 1.70114 1.37977 1.42435 1.06557 0.85513 0.79853 0.78050 0.78301 1.18532 1.20640 1.20954 1.20114 0.95769 0.93701 0.97902 1.21000 0.91914 1.00011 0.98656 1.21412 0.97786 0.95304 1.00362 1.21378 0.98801 0.94732 1.00142 1.21299 0.92140 1.00632 1.00410 1.21187 0.98817 0.94392 1.01669 1.21039 0.95829 0.98643 0.92964 1.21349 0.94777 1.00471 0.96098 1.22100 0.99758 0.94634 0.90381 1.61965 1.07348 1.55597 1.03154 1.22388 1.00524 0.97793 0.91577 1.22085 0.87067 0.98867 0.98836 1.21644 1.00224 0.99676 0.92987 0.94484 0.90435 0.92935 0.83619 0.98559 0.99412 0.92960 0.86599 0.84502 0.83766 0.84262 0.86975 0.92431 0.93073 0.91477 0.95516 0.90585 0.90517 0.90970 0.95739 0.95261 0.89719 0.90524 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.13 8.78 71.98 0.63 -4.50 16 2 C 0.10 2.94 1.98 44.91 0.09 3.02 16 3 H 0.06 1.95 7.74 -2.39 -0.02 1.93 16 4 N -0.67 -24.10 4.61 -473.31 -2.18 -26.28 16 5 C 0.15 6.02 1.98 44.17 0.09 6.11 16 6 H 0.03 1.25 6.87 -2.38 -0.02 1.23 16 7 C 0.04 2.14 4.52 29.85 0.13 2.28 16 8 C -0.53 -28.58 8.18 25.60 0.21 -28.37 16 9 H 0.06 3.25 7.44 -2.91 -0.02 3.23 16 10 C 0.01 0.36 5.46 84.66 0.46 0.82 16 11 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 12 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 13 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 C -0.07 -2.79 4.73 -19.87 -0.09 -2.88 16 17 C -0.10 -3.39 9.32 22.27 0.21 -3.18 16 18 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 19 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 20 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 21 C -0.14 -4.87 9.67 22.27 0.22 -4.66 16 22 C -0.07 -1.68 2.03 -10.72 -0.02 -1.70 16 23 C -0.09 -2.31 5.19 30.65 0.16 -2.15 16 24 C 0.06 1.32 5.46 86.33 0.47 1.79 16 25 N -0.56 -11.58 4.91 -922.56 -4.53 -16.11 16 26 C 0.03 0.40 9.59 127.69 1.22 1.63 16 27 C 0.06 1.15 5.46 86.33 0.47 1.63 16 28 C -0.11 -2.29 4.95 30.65 0.15 -2.14 16 29 H 0.04 1.22 7.34 -2.38 -0.02 1.21 16 30 H 0.08 1.84 6.52 -2.39 -0.02 1.83 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.34 13.75 6.96 -89.69 -0.62 13.13 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.12 4.19 7.47 -2.91 -0.02 4.17 16 37 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.11 3.74 8.04 -2.91 -0.02 3.72 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.95 7.45 -2.39 -0.02 1.93 16 44 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 46 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 48 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 51 H 0.08 1.48 6.59 -2.39 -0.02 1.47 16 52 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -62.03 401.74 0.90 -61.13 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.24 Total: 33.93 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 5.07 Total: -42.50 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -6.43 Total: -98.24 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -62.03 0.90 -61.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.963 kcal (2) G-P(sol) polarization free energy of solvation -62.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds