Wall clock time and date at job start Tue Mar 31 2020 11:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47233 * 2 1 4 4 N 1.46903 * 109.47325 * 119.99876 * 2 1 3 5 5 C 1.46902 * 110.99987 * 272.18919 * 4 2 1 6 6 H 1.08997 * 109.46913 * 330.72458 * 5 4 2 7 7 C 1.53003 * 109.46700 * 210.72715 * 5 4 2 8 8 C 1.50695 * 109.47259 * 64.13510 * 7 5 4 9 9 H 1.08006 * 120.00081 * 355.88226 * 8 7 5 10 10 C 1.37877 * 120.00168 * 175.88410 * 8 7 5 11 11 N 1.31512 * 119.99756 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00071 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46987 * 89.99880 * 12 10 8 14 14 H 1.48490 * 109.47028 * 209.99788 * 12 10 8 15 15 H 1.48497 * 109.46996 * 330.00094 * 12 10 8 16 16 C 1.50700 * 109.47121 * 90.72993 * 5 4 2 17 17 C 1.38237 * 120.00051 * 220.00142 * 16 5 4 18 18 C 1.38228 * 120.00239 * 179.97438 * 17 16 5 19 19 C 1.38239 * 119.99995 * 359.97438 * 18 17 16 20 20 C 1.38232 * 119.99795 * 359.96584 * 19 18 17 21 21 C 1.38232 * 120.00062 * 39.90645 * 16 5 4 22 22 C 1.53000 * 109.47011 * 239.99737 * 2 1 3 23 23 C 1.53115 * 109.52353 * 179.87432 * 22 2 1 24 24 C 1.53043 * 109.27800 * 182.50507 * 23 22 2 25 25 N 1.46847 * 109.57309 * 59.08276 * 24 23 22 26 26 C 1.46901 * 111.00080 * 174.19364 * 25 24 23 27 27 C 1.46850 * 111.20151 * 298.29299 * 25 24 23 28 28 C 1.53037 * 109.52236 * 61.73921 * 27 25 24 29 29 H 1.09002 * 109.46469 * 299.99725 * 1 2 3 30 30 H 1.08993 * 109.47325 * 59.99747 * 1 2 3 31 31 H 1.09003 * 109.47247 * 180.02562 * 1 2 3 32 32 H 1.00901 * 110.99879 * 148.22705 * 4 2 1 33 33 H 1.09002 * 109.46468 * 184.13409 * 7 5 4 34 34 H 1.08994 * 109.47147 * 304.13051 * 7 5 4 35 35 H 0.97003 * 119.99775 * 180.02562 * 11 10 8 36 36 H 1.08003 * 119.99481 * 0.24625 * 17 16 5 37 37 H 1.07998 * 120.00071 * 179.97438 * 18 17 16 38 38 H 1.07996 * 120.00015 * 179.97438 * 19 18 17 39 39 H 1.08003 * 119.99882 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.00407 * 0.06973 * 21 16 5 41 41 H 1.09001 * 109.52204 * 300.00399 * 22 2 1 42 42 H 1.09006 * 109.50296 * 302.38396 * 23 22 2 43 43 H 1.08997 * 109.50577 * 62.49854 * 23 22 2 44 44 H 1.09001 * 109.40981 * 299.06712 * 24 23 22 45 45 H 1.08999 * 109.46576 * 179.12598 * 24 23 22 46 46 H 1.09002 * 109.47606 * 184.20704 * 26 25 24 47 47 H 1.09000 * 109.47380 * 304.21415 * 26 25 24 48 48 H 1.09006 * 109.46956 * 64.20893 * 26 25 24 49 49 H 1.08999 * 109.45838 * 301.72712 * 27 25 24 50 50 H 1.09002 * 109.46599 * 181.76051 * 27 25 24 51 51 H 1.09001 * 109.50553 * 180.88398 * 28 27 25 52 52 H 1.09003 * 109.53486 * 60.78524 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.1459 0.2375 2.3296 6 1 2.3599 1.2382 1.9545 7 6 3.2860 -0.2200 3.2417 8 6 4.5907 -0.1440 2.4915 9 1 4.5981 0.1327 1.4475 10 6 5.7751 -0.4275 3.1379 11 7 5.7662 -0.7638 4.4092 12 14 7.3926 -0.3325 2.2081 13 1 7.9481 1.0401 2.3203 14 1 8.3542 -1.3045 2.7873 15 1 7.1611 -0.6575 0.7778 16 6 0.8564 0.2583 3.1093 17 6 0.3672 1.4527 3.6044 18 6 -0.8158 1.4720 4.3191 19 6 -1.5100 0.2968 4.5383 20 6 -1.0216 -0.8973 4.0422 21 6 0.1617 -0.9166 3.3277 22 6 2.0400 -0.7213 -1.2492 23 6 3.5711 -0.7193 -1.2520 24 6 4.0749 -1.3865 -2.5339 25 7 3.5632 -0.6579 -3.7016 26 6 4.1377 -1.1872 -4.9457 27 6 2.0957 -0.6880 -3.7452 28 6 1.5328 0.0014 -2.5002 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 2.8953 -1.1590 1.0155 33 1 3.3322 0.4269 4.1177 34 1 3.1081 -1.2478 3.5580 35 1 6.5995 -0.9630 4.8641 36 1 0.9072 2.3715 3.4290 37 1 -1.1977 2.4050 4.7062 38 1 -2.4341 0.3118 5.0971 39 1 -1.5638 -1.8155 4.2138 40 1 0.5436 -1.8497 2.9406 41 1 1.6770 -1.7491 -1.2500 42 1 3.9338 0.3079 -1.2108 43 1 3.9374 -1.2701 -0.3858 44 1 3.7244 -2.4181 -2.5672 45 1 5.1648 -1.3729 -2.5464 46 1 3.8005 -0.5828 -5.7878 47 1 5.2256 -1.1535 -4.8868 48 1 3.8134 -2.2185 -5.0858 49 1 1.7544 -1.7229 -3.7728 50 1 1.7479 -0.1672 -4.6373 51 1 0.4437 -0.0349 -2.5251 52 1 1.8619 1.0404 -2.4788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:28 Heat of formation + Delta-G solvation = 10.257786 kcal Electronic energy + Delta-G solvation = -27738.959470 eV Core-core repulsion = 24316.036317 eV Total energy + Delta-G solvation = -3422.923152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.51567 -38.74176 -36.62157 -34.26836 -32.51692 -30.96011 -30.90938 -30.33720 -29.34884 -27.56198 -26.45223 -24.60899 -23.03372 -22.79337 -22.10461 -21.78621 -20.27528 -19.65431 -19.26548 -16.58726 -16.13703 -15.95921 -15.21603 -15.05180 -14.82913 -14.65574 -14.55579 -14.34267 -13.83220 -13.69962 -13.41441 -13.01363 -12.78468 -12.67951 -12.50122 -12.34085 -12.26199 -12.05452 -11.90405 -11.78952 -11.36431 -11.27075 -11.08469 -11.03777 -10.98943 -10.73864 -10.58629 -10.51000 -10.33677 -10.17775 -10.10869 -9.87022 -9.51705 -9.12955 -8.44577 -8.37010 -8.34266 -7.98310 -7.70481 -6.05515 -4.09458 1.91648 1.96928 3.27792 3.35264 3.36754 3.93117 4.33735 4.41847 4.71419 4.86238 4.93141 5.04925 5.18229 5.29975 5.33362 5.36481 5.37963 5.43046 5.49120 5.52111 5.55101 5.64764 5.69604 5.74245 5.75121 5.80360 5.88418 5.93130 6.01737 6.08795 6.11049 6.14663 6.19069 6.24825 6.32725 6.41423 6.50577 6.52333 6.59956 6.61020 6.72961 6.78393 6.96855 7.03209 7.06381 7.09478 7.27790 7.50300 7.58252 7.61189 7.93071 8.04658 8.27559 8.32287 8.96474 9.55087 11.05033 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008285 B = 0.005498 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.860251 B = 5091.181433 C = 8039.678792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.092 3.908 3 H 0.040 0.960 4 N -0.678 5.678 5 C 0.127 3.873 6 H 0.043 0.957 7 C 0.026 3.974 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.063 3.937 11 N -0.889 5.889 12 Si 0.887 3.113 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.272 1.272 16 C -0.045 4.045 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.140 4.140 20 C -0.131 4.131 21 C -0.087 4.087 22 C -0.087 4.087 23 C -0.119 4.119 24 C 0.058 3.942 25 N -0.544 5.544 26 C 0.026 3.974 27 C 0.058 3.942 28 C -0.110 4.110 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.358 0.642 33 H 0.025 0.975 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.031 0.969 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.022 0.978 49 H 0.030 0.970 50 H 0.069 0.931 51 H 0.068 0.932 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 0.138 -11.926 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 H 0.058 0.942 4 N -0.314 5.314 5 C 0.017 3.983 6 H 0.061 0.939 7 C -0.011 4.011 8 C -0.563 4.563 9 H 0.074 0.926 10 C -0.139 4.139 11 N -0.527 5.527 12 Si 0.714 3.286 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.046 4.046 17 C -0.145 4.145 18 C -0.146 4.146 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.105 4.105 22 C -0.106 4.106 23 C -0.157 4.157 24 C -0.069 4.069 25 N -0.269 5.269 26 C -0.123 4.123 27 C -0.070 4.070 28 C -0.148 4.148 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.182 0.818 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.040 0.960 49 H 0.048 0.952 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.855 0.331 -11.549 15.853 hybrid contribution 1.534 -0.258 -0.662 1.691 sum -9.321 0.073 -12.211 15.362 Atomic orbital electron populations 1.21858 0.95501 1.01570 1.00590 1.21529 0.95093 0.95815 0.89360 0.94184 1.60533 1.36720 1.30150 1.03979 1.20714 0.91902 0.94297 0.91361 0.93924 1.19299 0.90189 0.97277 0.94376 1.21146 0.91342 1.47073 0.96713 0.92618 1.24963 0.99022 0.95113 0.94777 1.69965 1.27059 1.46254 1.09439 0.86677 0.83846 0.77849 0.80180 1.20750 1.21278 1.19671 1.20198 0.95795 0.92511 0.96081 1.21036 0.96181 0.97879 0.99380 1.20955 0.95904 0.97688 1.00020 1.20944 1.00040 0.93109 1.01696 1.21109 0.97111 0.97386 0.99290 1.21009 0.93886 0.98777 0.96822 1.21353 0.95306 0.99830 0.94148 1.21742 0.95082 1.02219 0.96620 1.22094 0.99755 0.94848 0.90242 1.61933 1.06994 1.55355 1.02590 1.22336 1.00295 0.97469 0.92172 1.22081 0.87333 0.98831 0.98779 1.21661 0.99671 1.00198 0.93266 0.92664 0.93528 0.92702 0.81778 0.95678 0.95781 0.92925 0.86840 0.87079 0.87242 0.87049 0.85572 0.91096 0.91106 0.90013 0.95035 0.90875 0.91649 0.91491 0.95976 0.95172 0.91218 0.91319 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.92 37.16 0.33 -1.59 16 2 C 0.09 1.41 2.24 -67.71 -0.15 1.26 16 3 H 0.04 0.67 7.32 -51.93 -0.38 0.29 16 4 N -0.68 -12.11 5.41 -100.95 -0.55 -12.66 16 5 C 0.13 2.53 2.21 -68.86 -0.15 2.38 16 6 H 0.04 0.89 7.15 -51.93 -0.37 0.52 16 7 C 0.03 0.64 4.52 -27.88 -0.13 0.51 16 8 C -0.52 -13.70 8.15 -34.44 -0.28 -13.98 16 9 H 0.06 1.40 7.42 -52.48 -0.39 1.01 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 12 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 C -0.05 -0.83 3.31 -104.62 -0.35 -1.17 16 17 C -0.13 -2.15 9.67 -39.59 -0.38 -2.54 16 18 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 19 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 20 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 21 C -0.09 -1.51 9.31 -39.58 -0.37 -1.88 16 22 C -0.09 -1.19 1.96 -90.50 -0.18 -1.37 16 23 C -0.12 -1.78 5.10 -26.65 -0.14 -1.92 16 24 C 0.06 0.78 5.46 -3.83 -0.02 0.76 16 25 N -0.54 -6.78 4.91 -242.95 -1.19 -7.97 16 26 C 0.03 0.26 9.59 60.07 0.58 0.84 16 27 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 28 C -0.11 -1.30 4.95 -26.65 -0.13 -1.43 16 29 H 0.05 0.85 6.68 -51.93 -0.35 0.50 16 30 H 0.05 0.57 6.49 -51.93 -0.34 0.23 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.36 6.93 4.56 -39.29 -0.18 6.75 16 33 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.11 1.84 8.04 -52.48 -0.42 1.42 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.13 2.25 7.72 -52.49 -0.40 1.85 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.37 6.32 -51.93 -0.33 1.05 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 48 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 51 H 0.07 0.73 6.58 -51.93 -0.34 0.39 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -27.91 397.41 -12.11 -40.02 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -9.39 Total: 8.90 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.68 Total: -25.01 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.00 Total: -45.75 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -27.91 -12.11 -40.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.275 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds