Wall clock time and date at job start Tue Mar 31 2020 11:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47233 * 2 1 4 4 N 1.46903 * 109.47325 * 119.99876 * 2 1 3 5 5 C 1.46902 * 110.99987 * 272.18919 * 4 2 1 6 6 H 1.08997 * 109.46913 * 330.72458 * 5 4 2 7 7 C 1.53003 * 109.46700 * 210.72715 * 5 4 2 8 8 C 1.50695 * 109.47259 * 64.13510 * 7 5 4 9 9 H 1.08006 * 120.00081 * 355.88226 * 8 7 5 10 10 C 1.37877 * 120.00168 * 175.88410 * 8 7 5 11 11 N 1.31512 * 119.99756 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00071 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46987 * 89.99880 * 12 10 8 14 14 H 1.48490 * 109.47028 * 209.99788 * 12 10 8 15 15 H 1.48497 * 109.46996 * 330.00094 * 12 10 8 16 16 C 1.50700 * 109.47121 * 90.72993 * 5 4 2 17 17 C 1.38237 * 120.00051 * 220.00142 * 16 5 4 18 18 C 1.38228 * 120.00239 * 179.97438 * 17 16 5 19 19 C 1.38239 * 119.99995 * 359.97438 * 18 17 16 20 20 C 1.38232 * 119.99795 * 359.96584 * 19 18 17 21 21 C 1.38232 * 120.00062 * 39.90645 * 16 5 4 22 22 C 1.53000 * 109.47011 * 239.99737 * 2 1 3 23 23 C 1.53115 * 109.52353 * 179.87432 * 22 2 1 24 24 C 1.53043 * 109.27800 * 182.50507 * 23 22 2 25 25 N 1.46847 * 109.57309 * 59.08276 * 24 23 22 26 26 C 1.46901 * 111.00080 * 174.19364 * 25 24 23 27 27 C 1.46850 * 111.20151 * 298.29299 * 25 24 23 28 28 C 1.53037 * 109.52236 * 61.73921 * 27 25 24 29 29 H 1.09002 * 109.46469 * 299.99725 * 1 2 3 30 30 H 1.08993 * 109.47325 * 59.99747 * 1 2 3 31 31 H 1.09003 * 109.47247 * 180.02562 * 1 2 3 32 32 H 1.00901 * 110.99879 * 148.22705 * 4 2 1 33 33 H 1.09002 * 109.46468 * 184.13409 * 7 5 4 34 34 H 1.08994 * 109.47147 * 304.13051 * 7 5 4 35 35 H 0.97003 * 119.99775 * 180.02562 * 11 10 8 36 36 H 1.08003 * 119.99481 * 0.24625 * 17 16 5 37 37 H 1.07998 * 120.00071 * 179.97438 * 18 17 16 38 38 H 1.07996 * 120.00015 * 179.97438 * 19 18 17 39 39 H 1.08003 * 119.99882 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.00407 * 0.06973 * 21 16 5 41 41 H 1.09001 * 109.52204 * 300.00399 * 22 2 1 42 42 H 1.09006 * 109.50296 * 302.38396 * 23 22 2 43 43 H 1.08997 * 109.50577 * 62.49854 * 23 22 2 44 44 H 1.09001 * 109.40981 * 299.06712 * 24 23 22 45 45 H 1.08999 * 109.46576 * 179.12598 * 24 23 22 46 46 H 1.09002 * 109.47606 * 184.20704 * 26 25 24 47 47 H 1.09000 * 109.47380 * 304.21415 * 26 25 24 48 48 H 1.09006 * 109.46956 * 64.20893 * 26 25 24 49 49 H 1.08999 * 109.45838 * 301.72712 * 27 25 24 50 50 H 1.09002 * 109.46599 * 181.76051 * 27 25 24 51 51 H 1.09001 * 109.50553 * 180.88398 * 28 27 25 52 52 H 1.09003 * 109.53486 * 60.78524 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.1459 0.2375 2.3296 6 1 2.3599 1.2382 1.9545 7 6 3.2860 -0.2200 3.2417 8 6 4.5907 -0.1440 2.4915 9 1 4.5981 0.1327 1.4475 10 6 5.7751 -0.4275 3.1379 11 7 5.7662 -0.7638 4.4092 12 14 7.3926 -0.3325 2.2081 13 1 7.9481 1.0401 2.3203 14 1 8.3542 -1.3045 2.7873 15 1 7.1611 -0.6575 0.7778 16 6 0.8564 0.2583 3.1093 17 6 0.3672 1.4527 3.6044 18 6 -0.8158 1.4720 4.3191 19 6 -1.5100 0.2968 4.5383 20 6 -1.0216 -0.8973 4.0422 21 6 0.1617 -0.9166 3.3277 22 6 2.0400 -0.7213 -1.2492 23 6 3.5711 -0.7193 -1.2520 24 6 4.0749 -1.3865 -2.5339 25 7 3.5632 -0.6579 -3.7016 26 6 4.1377 -1.1872 -4.9457 27 6 2.0957 -0.6880 -3.7452 28 6 1.5328 0.0014 -2.5002 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 2.8953 -1.1590 1.0155 33 1 3.3322 0.4269 4.1177 34 1 3.1081 -1.2478 3.5580 35 1 6.5995 -0.9630 4.8641 36 1 0.9072 2.3715 3.4290 37 1 -1.1977 2.4050 4.7062 38 1 -2.4341 0.3118 5.0971 39 1 -1.5638 -1.8155 4.2138 40 1 0.5436 -1.8497 2.9406 41 1 1.6770 -1.7491 -1.2500 42 1 3.9338 0.3079 -1.2108 43 1 3.9374 -1.2701 -0.3858 44 1 3.7244 -2.4181 -2.5672 45 1 5.1648 -1.3729 -2.5464 46 1 3.8005 -0.5828 -5.7878 47 1 5.2256 -1.1535 -4.8868 48 1 3.8134 -2.2185 -5.0858 49 1 1.7544 -1.7229 -3.7728 50 1 1.7479 -0.1672 -4.6373 51 1 0.4437 -0.0349 -2.5251 52 1 1.8619 1.0404 -2.4788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090665776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:27 Heat of formation + Delta-G solvation = -4.406318 kcal Electronic energy + Delta-G solvation = -27739.595353 eV Core-core repulsion = 24316.036317 eV Total energy + Delta-G solvation = -3423.559036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73999 -39.94121 -37.89674 -35.78655 -34.35108 -32.20442 -31.99443 -31.59570 -30.79506 -29.21071 -27.43438 -26.31323 -24.16464 -23.85142 -23.63563 -23.16615 -21.46007 -21.05027 -20.50404 -18.55447 -17.47271 -17.21890 -16.57794 -16.38575 -16.19508 -16.00565 -15.78052 -15.52540 -15.02731 -14.91973 -14.60379 -14.46683 -14.17654 -14.02878 -13.80142 -13.61145 -13.55262 -13.24627 -13.22187 -13.17067 -12.78982 -12.69613 -12.46486 -12.36739 -12.33249 -12.18265 -12.08527 -11.97001 -11.75280 -11.56217 -11.47486 -11.14095 -11.03385 -10.96170 -10.58216 -9.65621 -9.35530 -9.28000 -9.18824 -8.19258 -6.29834 0.63238 0.69295 1.38237 1.38979 1.49367 2.39006 3.00451 3.05868 3.12854 3.40534 3.76101 3.83146 3.94834 4.15239 4.18649 4.22421 4.31244 4.33220 4.37130 4.43219 4.47986 4.55704 4.59978 4.62658 4.66679 4.74452 4.81093 4.82155 4.84596 4.88767 4.89950 4.91974 5.00254 5.01883 5.08398 5.15015 5.20491 5.26410 5.28997 5.33290 5.44549 5.46319 5.53516 5.58571 5.71195 5.75979 5.82650 5.94475 6.11541 6.17880 6.18911 6.30134 6.48112 6.71233 6.84705 7.38928 8.92099 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008285 B = 0.005498 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.860251 B = 5091.181433 C = 8039.678792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.094 3.906 3 H 0.023 0.977 4 N -0.674 5.674 5 C 0.143 3.857 6 H 0.027 0.973 7 C 0.038 3.962 8 C -0.528 4.528 9 H 0.062 0.938 10 C 0.009 3.991 11 N -0.929 5.929 12 Si 0.953 3.047 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.258 1.258 16 C -0.066 4.066 17 C -0.143 4.143 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.101 4.101 22 C -0.078 4.078 23 C -0.115 4.115 24 C 0.064 3.936 25 N -0.559 5.559 26 C 0.026 3.974 27 C 0.059 3.941 28 C -0.104 4.104 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.347 0.653 33 H -0.011 1.011 34 H -0.004 1.004 35 H 0.262 0.738 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.028 0.972 49 H 0.035 0.965 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 0.274 -13.740 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 H 0.041 0.959 4 N -0.308 5.308 5 C 0.033 3.967 6 H 0.045 0.955 7 C 0.001 3.999 8 C -0.566 4.566 9 H 0.080 0.920 10 C -0.189 4.189 11 N -0.569 5.569 12 Si 0.778 3.222 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.182 1.182 16 C -0.067 4.067 17 C -0.162 4.162 18 C -0.143 4.143 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.120 4.120 22 C -0.097 4.097 23 C -0.153 4.153 24 C -0.064 4.064 25 N -0.284 5.284 26 C -0.122 4.122 27 C -0.069 4.069 28 C -0.142 4.142 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.169 0.831 33 H 0.007 0.993 34 H 0.014 0.986 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.107 0.893 51 H 0.105 0.895 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.721 0.476 -13.386 18.473 hybrid contribution 2.043 -0.281 -0.052 2.063 sum -10.678 0.194 -13.439 17.165 Atomic orbital electron populations 1.21758 0.93865 1.01775 1.01023 1.21595 0.96221 0.94776 0.89024 0.95886 1.60615 1.35825 1.29768 1.04624 1.20344 0.91552 0.93413 0.91344 0.95497 1.19072 0.92066 0.94780 0.93973 1.21465 0.92046 1.46044 0.97018 0.91988 1.25815 1.02742 0.94829 0.95540 1.70103 1.27967 1.47698 1.11156 0.85629 0.79347 0.77790 0.79471 1.20412 1.21035 1.18228 1.20048 0.95468 0.93794 0.97400 1.21180 0.97458 0.97333 1.00236 1.21304 0.94775 0.99432 0.98797 1.21377 1.00858 0.92215 1.00626 1.21417 0.96155 0.99109 0.98162 1.20990 0.95117 0.97811 0.98060 1.21267 0.94226 0.99891 0.94303 1.21642 0.96184 1.00696 0.96826 1.21967 0.99519 0.94927 0.90008 1.61925 1.07907 1.55579 1.02965 1.22386 1.00319 0.98070 0.91439 1.22122 0.86552 0.99252 0.98964 1.21626 1.00744 0.99356 0.92458 0.94143 0.91110 0.92515 0.83080 0.99258 0.98570 0.92917 0.87023 0.84158 0.83634 0.84448 0.86872 0.90966 0.93073 0.92492 0.94597 0.91295 0.90134 0.91462 0.95323 0.94678 0.89298 0.89466 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.92 71.98 0.64 -2.78 16 2 C 0.09 2.91 2.24 44.92 0.10 3.01 16 3 H 0.02 0.80 7.32 -2.39 -0.02 0.79 16 4 N -0.67 -25.29 5.41 -473.30 -2.56 -27.85 16 5 C 0.14 6.09 2.21 44.17 0.10 6.19 16 6 H 0.03 1.21 7.15 -2.39 -0.02 1.19 16 7 C 0.04 2.03 4.52 29.85 0.13 2.17 16 8 C -0.53 -28.89 8.15 25.60 0.21 -28.68 16 9 H 0.06 3.25 7.42 -2.91 -0.02 3.23 16 10 C 0.01 0.52 5.46 84.66 0.46 0.98 16 11 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 12 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 16 C -0.07 -2.52 3.31 -19.87 -0.07 -2.59 16 17 C -0.14 -4.94 9.67 22.27 0.22 -4.72 16 18 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 19 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 20 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 21 C -0.10 -3.58 9.31 22.27 0.21 -3.37 16 22 C -0.08 -2.10 1.96 -10.72 -0.02 -2.13 16 23 C -0.12 -3.54 5.10 30.65 0.16 -3.38 16 24 C 0.06 1.68 5.46 86.33 0.47 2.15 16 25 N -0.56 -12.98 4.91 -922.55 -4.53 -17.51 16 26 C 0.03 0.46 9.59 127.69 1.22 1.69 16 27 C 0.06 1.18 5.46 86.33 0.47 1.65 16 28 C -0.10 -2.27 4.95 30.65 0.15 -2.12 16 29 H 0.04 1.22 6.68 -2.39 -0.02 1.21 16 30 H 0.07 1.56 6.49 -2.39 -0.02 1.55 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.35 14.23 4.56 -89.69 -0.41 13.82 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.11 3.76 8.04 -2.91 -0.02 3.73 16 37 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.11 4.20 7.72 -2.91 -0.02 4.18 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.06 2.01 6.32 -2.39 -0.02 1.99 16 44 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 48 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 49 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 51 H 0.09 1.60 6.58 -2.39 -0.02 1.59 16 52 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -63.11 397.41 0.80 -62.31 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.45 Total: 35.14 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 5.13 Total: -42.04 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -6.81 Total: -101.32 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -63.11 0.80 -62.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.905 kcal (2) G-P(sol) polarization free energy of solvation -63.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds