Wall clock time and date at job start Tue Mar 31 2020 11:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47149 * 2 1 4 4 N 1.46895 * 109.47591 * 240.00269 * 2 1 3 5 5 C 1.46907 * 111.00187 * 49.95976 * 4 2 1 6 6 C 1.46899 * 111.00361 * 173.91968 * 4 2 1 7 7 C 1.50704 * 109.46950 * 169.99564 * 6 4 2 8 8 C 1.38285 * 119.92603 * 269.72865 * 7 6 4 9 9 C 1.38107 * 120.07256 * 179.73090 * 8 7 6 10 10 C 1.38912 * 119.92257 * 0.54180 * 9 8 7 11 11 N 1.39676 * 120.07032 * 179.70901 * 10 9 8 12 12 C 1.46497 * 119.99680 * 180.02562 * 11 10 9 13 13 C 1.46495 * 120.00340 * 0.02562 * 11 10 9 14 14 C 1.50702 * 109.47176 * 89.99890 * 13 11 10 15 15 H 1.07999 * 119.99996 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00144 * 179.97438 * 14 13 11 17 17 N 1.31517 * 119.99954 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99946 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47374 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46869 * 120.00421 * 18 16 14 21 21 H 1.48497 * 109.47468 * 240.00433 * 18 16 14 22 22 C 1.38902 * 119.85473 * 359.72815 * 10 9 8 23 23 C 1.38112 * 119.92619 * 0.02562 * 22 10 9 24 24 C 1.53003 * 109.47335 * 119.99593 * 2 1 3 25 25 C 1.52998 * 115.54530 * 65.40971 * 24 2 1 26 26 C 1.52997 * 117.51850 * 211.10978 * 24 2 1 27 27 C 1.52992 * 117.50155 * 279.74223 * 24 2 1 28 28 H 1.09000 * 109.46673 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47457 * 299.99715 * 1 2 3 30 30 H 1.09000 * 109.47053 * 60.00169 * 1 2 3 31 31 H 1.08999 * 109.46846 * 54.49432 * 5 4 2 32 32 H 1.08995 * 109.47028 * 174.49592 * 5 4 2 33 33 H 1.09004 * 109.46811 * 294.49740 * 5 4 2 34 34 H 1.08992 * 109.46919 * 289.99763 * 6 4 2 35 35 H 1.09000 * 109.47053 * 50.00246 * 6 4 2 36 36 H 1.08000 * 119.96272 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.03687 * 180.26858 * 9 8 7 38 38 H 1.09002 * 109.47193 * 89.99961 * 12 11 10 39 39 H 1.09008 * 109.47181 * 209.99735 * 12 11 10 40 40 H 1.08997 * 109.47673 * 330.00217 * 12 11 10 41 41 H 1.08997 * 109.47572 * 209.99921 * 13 11 10 42 42 H 1.09001 * 109.46955 * 330.00472 * 13 11 10 43 43 H 0.97003 * 119.99771 * 179.97438 * 17 16 14 44 44 H 1.08000 * 120.04192 * 179.97438 * 22 10 9 45 45 H 1.07995 * 119.96579 * 179.97438 * 23 22 10 46 46 H 1.09003 * 109.47249 * 275.82425 * 25 24 2 47 47 H 1.09002 * 109.46958 * 155.82269 * 25 24 2 48 48 H 1.09005 * 109.47216 * 35.82267 * 25 24 2 49 49 H 1.09000 * 117.49801 * 214.96859 * 26 24 2 50 50 H 1.08996 * 117.49895 * 359.97438 * 26 24 2 51 51 H 1.09004 * 117.50094 * 359.97438 * 27 24 2 52 52 H 1.09001 * 117.50111 * 144.99470 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1994 5 6 1.3635 -0.1783 -2.4090 6 6 3.4810 -0.5875 -1.3082 7 6 3.9706 -1.5046 -2.3991 8 6 4.3231 -2.8076 -2.0985 9 6 4.7669 -3.6524 -3.0969 10 6 4.8697 -3.1885 -4.4022 11 7 5.3240 -4.0384 -5.4132 12 6 5.4323 -3.5474 -6.7892 13 6 5.6921 -5.4208 -5.0977 14 6 4.4826 -6.3082 -5.2421 15 1 3.5347 -5.8849 -5.5397 16 6 4.5865 -7.6608 -4.9955 17 7 5.7410 -8.1764 -4.6337 18 14 3.0872 -8.7606 -5.1739 19 1 1.9193 -7.9421 -5.5881 20 1 3.3539 -9.7980 -6.2024 21 1 2.7965 -9.4160 -3.8735 22 6 4.5201 -1.8775 -4.6997 23 6 4.0722 -1.0395 -3.6975 24 6 2.0401 -0.7212 1.2493 25 6 1.7184 -2.2150 1.3263 26 6 3.3710 -0.2536 1.8416 27 6 2.0591 0.0659 2.5611 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.4895 0.9032 -2.4589 32 1 1.8131 -0.6375 -3.2893 33 1 0.3009 -0.4192 -2.3761 34 1 3.7546 0.4401 -1.5473 35 1 3.9373 -0.8740 -0.3607 36 1 4.2475 -3.1661 -1.0825 37 1 5.0379 -4.6711 -2.8622 38 1 6.4252 -3.1267 -6.9477 39 1 5.2724 -4.3727 -7.4832 40 1 4.6800 -2.7776 -6.9606 41 1 6.4715 -5.7547 -5.7826 42 1 6.0613 -5.4738 -4.0735 43 1 5.8140 -9.1280 -4.4598 44 1 4.5993 -1.5136 -5.7135 45 1 3.8006 -0.0200 -3.9280 46 1 0.7166 -2.3504 1.7339 47 1 2.4435 -2.7099 1.9725 48 1 1.7661 -2.6489 0.3275 49 1 4.0175 -1.0102 2.2862 50 1 3.8837 0.5677 1.3410 51 1 1.7086 1.0977 2.5341 52 1 1.8425 -0.4805 3.4791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091900741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:51 Heat of formation + Delta-G solvation = 60.623549 kcal Electronic energy + Delta-G solvation = -27015.944107 eV Core-core repulsion = 23595.204978 eV Total energy + Delta-G solvation = -3420.739129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.72390 -38.73574 -36.51475 -35.19491 -32.73001 -31.42091 -30.43081 -29.21708 -28.26866 -27.81817 -27.07036 -25.37577 -23.90157 -22.53864 -22.30622 -21.73237 -21.15245 -19.50783 -18.67982 -16.61723 -16.42372 -16.04811 -15.80547 -15.09563 -15.02800 -14.65702 -14.32624 -14.08023 -13.76335 -13.68397 -13.12598 -13.05926 -12.87965 -12.81110 -12.62181 -12.32084 -12.14153 -12.11018 -11.97722 -11.70063 -11.63041 -11.49882 -11.37116 -11.31792 -11.21276 -10.90322 -10.83620 -10.67398 -10.63183 -10.25612 -10.04750 -9.85114 -9.76619 -9.66961 -8.79062 -8.49299 -8.22790 -8.14835 -6.43246 -5.99473 -4.15613 2.15056 2.26324 3.26759 3.34898 3.40174 3.56137 4.05173 4.18759 4.43185 4.50832 4.68748 4.73410 4.83300 4.97314 5.15206 5.23192 5.26006 5.28527 5.34993 5.48668 5.51683 5.55632 5.59884 5.61804 5.70662 5.74115 5.77403 5.84276 5.87889 5.89745 5.97073 5.99161 6.05470 6.07685 6.11402 6.13856 6.19823 6.30344 6.43213 6.45768 6.48819 6.68005 6.96387 7.04961 7.14328 7.22419 7.28195 7.31782 7.42717 7.65127 7.83081 8.17575 8.29615 8.52176 8.93933 9.51301 10.97177 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.003236 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.754741 B = 8650.828997 C = 9519.572373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.118 3.882 3 H 0.035 0.965 4 N -0.525 5.525 5 C 0.019 3.981 6 C 0.107 3.893 7 C -0.163 4.163 8 C -0.051 4.051 9 C -0.188 4.188 10 C 0.241 3.759 11 N -0.616 5.616 12 C 0.099 3.901 13 C 0.249 3.751 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.222 4.222 23 C -0.070 4.070 24 C -0.107 4.107 25 C -0.111 4.111 26 C -0.179 4.179 27 C -0.177 4.177 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.017 0.983 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.035 0.965 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.263 0.737 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.090 0.910 51 H 0.089 0.911 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 17.694 9.162 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.053 0.947 4 N -0.249 5.249 5 C -0.129 4.129 6 C -0.019 4.019 7 C -0.166 4.166 8 C -0.070 4.070 9 C -0.210 4.210 10 C 0.134 3.866 11 N -0.322 5.322 12 C -0.045 4.045 13 C 0.129 3.871 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.245 4.245 23 C -0.089 4.089 24 C -0.107 4.107 25 C -0.168 4.168 26 C -0.216 4.216 27 C -0.215 4.215 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.100 0.900 49 H 0.113 0.887 50 H 0.108 0.892 51 H 0.107 0.893 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.298 16.866 9.065 20.157 hybrid contribution -0.564 0.133 -0.254 0.633 sum -6.862 16.999 8.811 20.339 Atomic orbital electron populations 1.21874 0.94274 1.02819 1.01285 1.21087 0.95124 0.93849 0.88920 0.94746 1.61976 1.05442 1.55968 1.01523 1.22498 0.99837 0.96738 0.93790 1.20921 0.86918 0.95949 0.98137 1.19143 1.08191 0.95447 0.93842 1.20610 0.95927 0.92363 0.98134 1.20888 1.07559 1.01121 0.91470 1.17936 0.90562 0.89237 0.88879 1.47083 1.67945 1.12367 1.04836 1.21458 0.99311 0.99427 0.84325 1.19277 0.95598 0.75105 0.97092 1.21623 0.96359 0.92375 1.46489 0.92212 1.24962 0.96124 0.97990 0.95016 1.69944 1.23863 1.12963 1.46670 0.86477 0.82994 0.80419 0.77806 1.19712 1.20993 1.20820 1.20509 1.11243 0.93684 0.99095 1.20507 0.98141 0.97899 0.92345 1.21410 1.00240 0.96256 0.92843 1.21271 1.00307 0.91845 1.03424 1.23142 0.90822 1.03477 1.04118 1.23015 1.01799 1.00730 0.95947 0.91459 0.92515 0.92537 0.96463 0.90283 0.91550 0.95541 0.89957 0.87153 0.85166 0.94703 0.91511 0.92751 0.95274 0.94626 0.92732 0.87071 0.87873 0.92948 0.93162 0.89997 0.88690 0.89196 0.89287 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.49 37.16 0.32 -1.04 16 2 C 0.12 1.24 1.95 -67.71 -0.13 1.10 16 3 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 4 N -0.53 -6.44 3.82 -236.33 -0.90 -7.34 16 5 C 0.02 0.23 8.52 60.07 0.51 0.74 16 6 C 0.11 1.39 4.91 -4.97 -0.02 1.37 16 7 C -0.16 -2.54 4.91 -104.58 -0.51 -3.06 16 8 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 9 C -0.19 -3.84 9.21 -39.38 -0.36 -4.20 16 10 C 0.24 4.91 6.55 -83.79 -0.55 4.36 16 11 N -0.62 -13.31 2.99 -181.01 -0.54 -13.85 16 12 C 0.10 1.76 10.19 59.85 0.61 2.36 16 13 C 0.25 6.28 4.91 -5.20 -0.03 6.26 16 14 C -0.53 -14.54 9.39 -34.44 -0.32 -14.87 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.22 -3.88 9.21 -39.38 -0.36 -4.25 16 23 C -0.07 -1.08 7.85 -39.61 -0.31 -1.40 16 24 C -0.11 -1.07 1.15 -154.51 -0.18 -1.25 16 25 C -0.11 -1.20 9.21 37.16 0.34 -0.86 16 26 C -0.18 -1.68 8.06 -26.73 -0.22 -1.89 16 27 C -0.18 -1.52 9.97 -26.74 -0.27 -1.79 16 28 H 0.07 0.68 7.72 -51.93 -0.40 0.28 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.50 6.44 -51.93 -0.33 0.17 16 31 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16 32 H 0.08 1.05 5.51 -51.93 -0.29 0.76 16 33 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 34 H 0.03 0.33 8.06 -51.93 -0.42 -0.09 16 35 H 0.08 1.04 5.45 -51.93 -0.28 0.76 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.13 2.94 6.14 -52.49 -0.32 2.62 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 40 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 41 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 42 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.11 1.76 6.14 -52.49 -0.32 1.44 16 45 H 0.10 1.38 7.88 -52.49 -0.41 0.96 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.52 7.91 -51.93 -0.41 0.11 16 48 H 0.08 1.05 7.39 -51.93 -0.38 0.67 16 49 H 0.09 0.88 8.06 -51.93 -0.42 0.46 16 50 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 51 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 401.49 15.07 6.05 6.05 Total: -1.00 -28.46 401.49 -10.80 -39.26 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -9.16 Total: 2.54 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.97 Total: -18.07 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.71 Total: -46.20 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.46 -10.80 -39.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091900741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.887 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds