Wall clock time and date at job start Tue Mar 31 2020 11:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47149 * 2 1 4 4 N 1.46895 * 109.47591 * 240.00269 * 2 1 3 5 5 C 1.46907 * 111.00187 * 49.95976 * 4 2 1 6 6 C 1.46899 * 111.00361 * 173.91968 * 4 2 1 7 7 C 1.50704 * 109.46950 * 169.99564 * 6 4 2 8 8 C 1.38285 * 119.92603 * 269.72865 * 7 6 4 9 9 C 1.38107 * 120.07256 * 179.73090 * 8 7 6 10 10 C 1.38912 * 119.92257 * 0.54180 * 9 8 7 11 11 N 1.39676 * 120.07032 * 179.70901 * 10 9 8 12 12 C 1.46497 * 119.99680 * 180.02562 * 11 10 9 13 13 C 1.46495 * 120.00340 * 0.02562 * 11 10 9 14 14 C 1.50702 * 109.47176 * 89.99890 * 13 11 10 15 15 H 1.07999 * 119.99996 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00144 * 179.97438 * 14 13 11 17 17 N 1.31517 * 119.99954 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99946 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47374 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46869 * 120.00421 * 18 16 14 21 21 H 1.48497 * 109.47468 * 240.00433 * 18 16 14 22 22 C 1.38902 * 119.85473 * 359.72815 * 10 9 8 23 23 C 1.38112 * 119.92619 * 0.02562 * 22 10 9 24 24 C 1.53003 * 109.47335 * 119.99593 * 2 1 3 25 25 C 1.52998 * 115.54530 * 65.40971 * 24 2 1 26 26 C 1.52997 * 117.51850 * 211.10978 * 24 2 1 27 27 C 1.52992 * 117.50155 * 279.74223 * 24 2 1 28 28 H 1.09000 * 109.46673 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47457 * 299.99715 * 1 2 3 30 30 H 1.09000 * 109.47053 * 60.00169 * 1 2 3 31 31 H 1.08999 * 109.46846 * 54.49432 * 5 4 2 32 32 H 1.08995 * 109.47028 * 174.49592 * 5 4 2 33 33 H 1.09004 * 109.46811 * 294.49740 * 5 4 2 34 34 H 1.08992 * 109.46919 * 289.99763 * 6 4 2 35 35 H 1.09000 * 109.47053 * 50.00246 * 6 4 2 36 36 H 1.08000 * 119.96272 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.03687 * 180.26858 * 9 8 7 38 38 H 1.09002 * 109.47193 * 89.99961 * 12 11 10 39 39 H 1.09008 * 109.47181 * 209.99735 * 12 11 10 40 40 H 1.08997 * 109.47673 * 330.00217 * 12 11 10 41 41 H 1.08997 * 109.47572 * 209.99921 * 13 11 10 42 42 H 1.09001 * 109.46955 * 330.00472 * 13 11 10 43 43 H 0.97003 * 119.99771 * 179.97438 * 17 16 14 44 44 H 1.08000 * 120.04192 * 179.97438 * 22 10 9 45 45 H 1.07995 * 119.96579 * 179.97438 * 23 22 10 46 46 H 1.09003 * 109.47249 * 275.82425 * 25 24 2 47 47 H 1.09002 * 109.46958 * 155.82269 * 25 24 2 48 48 H 1.09005 * 109.47216 * 35.82267 * 25 24 2 49 49 H 1.09000 * 117.49801 * 214.96859 * 26 24 2 50 50 H 1.08996 * 117.49895 * 359.97438 * 26 24 2 51 51 H 1.09004 * 117.50094 * 359.97438 * 27 24 2 52 52 H 1.09001 * 117.50111 * 144.99470 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1994 5 6 1.3635 -0.1783 -2.4090 6 6 3.4810 -0.5875 -1.3082 7 6 3.9706 -1.5046 -2.3991 8 6 4.3231 -2.8076 -2.0985 9 6 4.7669 -3.6524 -3.0969 10 6 4.8697 -3.1885 -4.4022 11 7 5.3240 -4.0384 -5.4132 12 6 5.4323 -3.5474 -6.7892 13 6 5.6921 -5.4208 -5.0977 14 6 4.4826 -6.3082 -5.2421 15 1 3.5347 -5.8849 -5.5397 16 6 4.5865 -7.6608 -4.9955 17 7 5.7410 -8.1764 -4.6337 18 14 3.0872 -8.7606 -5.1739 19 1 1.9193 -7.9421 -5.5881 20 1 3.3539 -9.7980 -6.2024 21 1 2.7965 -9.4160 -3.8735 22 6 4.5201 -1.8775 -4.6997 23 6 4.0722 -1.0395 -3.6975 24 6 2.0401 -0.7212 1.2493 25 6 1.7184 -2.2150 1.3263 26 6 3.3710 -0.2536 1.8416 27 6 2.0591 0.0659 2.5611 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.4895 0.9032 -2.4589 32 1 1.8131 -0.6375 -3.2893 33 1 0.3009 -0.4192 -2.3761 34 1 3.7546 0.4401 -1.5473 35 1 3.9373 -0.8740 -0.3607 36 1 4.2475 -3.1661 -1.0825 37 1 5.0379 -4.6711 -2.8622 38 1 6.4252 -3.1267 -6.9477 39 1 5.2724 -4.3727 -7.4832 40 1 4.6800 -2.7776 -6.9606 41 1 6.4715 -5.7547 -5.7826 42 1 6.0613 -5.4738 -4.0735 43 1 5.8140 -9.1280 -4.4598 44 1 4.5993 -1.5136 -5.7135 45 1 3.8006 -0.0200 -3.9280 46 1 0.7166 -2.3504 1.7339 47 1 2.4435 -2.7099 1.9725 48 1 1.7661 -2.6489 0.3275 49 1 4.0175 -1.0102 2.2862 50 1 3.8837 0.5677 1.3410 51 1 1.7086 1.0977 2.5341 52 1 1.8425 -0.4805 3.4791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091900741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:50 Heat of formation + Delta-G solvation = 47.807367 kcal Electronic energy + Delta-G solvation = -27016.499858 eV Core-core repulsion = 23595.204978 eV Total energy + Delta-G solvation = -3421.294880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78265 -39.94575 -37.72044 -36.45240 -34.75420 -32.51488 -31.89797 -30.33689 -29.66073 -29.09957 -28.10981 -26.82641 -25.39165 -23.73355 -23.22787 -23.03391 -22.32253 -20.95410 -19.47579 -18.63384 -18.07092 -17.01554 -16.83089 -16.57691 -16.25336 -15.98575 -15.46998 -15.33460 -15.26245 -14.91071 -14.51460 -14.30559 -14.04239 -14.00117 -13.84986 -13.47787 -13.32888 -13.17968 -13.07875 -13.01122 -12.85861 -12.73971 -12.65323 -12.57653 -12.46132 -12.39381 -12.23397 -12.11198 -11.79400 -11.70127 -11.61840 -11.38779 -10.84843 -10.64289 -10.50539 -10.33052 -9.62852 -9.07954 -8.35509 -7.77874 -6.37025 0.73014 0.86675 1.35784 1.37640 1.49890 2.34643 2.64819 2.77099 3.05045 3.06539 3.41746 3.79180 3.96655 4.05818 4.08823 4.12839 4.20639 4.24408 4.41463 4.43606 4.46730 4.51622 4.61097 4.66860 4.70939 4.74510 4.82151 4.84640 4.88055 4.91201 4.94768 4.96869 5.03119 5.05252 5.08637 5.12063 5.15318 5.19251 5.22104 5.31215 5.33910 5.34516 5.41733 5.56331 5.60903 5.68804 5.71315 5.96635 6.07859 6.20687 6.28914 6.35462 6.51527 6.83833 6.95749 7.34905 8.83658 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.003236 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.754741 B = 8650.828997 C = 9519.572373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.121 3.879 3 H 0.041 0.959 4 N -0.539 5.539 5 C 0.020 3.980 6 C 0.114 3.886 7 C -0.150 4.150 8 C -0.054 4.054 9 C -0.216 4.216 10 C 0.213 3.787 11 N -0.633 5.633 12 C 0.099 3.901 13 C 0.267 3.733 14 C -0.540 4.540 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.926 5.926 18 Si 0.961 3.039 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.277 1.277 22 C -0.216 4.216 23 C -0.061 4.061 24 C -0.119 4.119 25 C -0.107 4.107 26 C -0.183 4.183 27 C -0.162 4.162 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.132 0.868 45 H 0.138 0.862 46 H 0.057 0.943 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 20.354 9.672 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 H 0.059 0.941 4 N -0.263 5.263 5 C -0.127 4.127 6 C -0.013 4.013 7 C -0.152 4.152 8 C -0.073 4.073 9 C -0.239 4.239 10 C 0.108 3.892 11 N -0.341 5.341 12 C -0.044 4.044 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.066 0.934 16 C -0.187 4.187 17 N -0.566 5.566 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.199 1.199 21 H -0.203 1.203 22 C -0.239 4.239 23 C -0.080 4.080 24 C -0.119 4.119 25 C -0.165 4.165 26 C -0.220 4.220 27 C -0.200 4.200 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.119 0.881 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.059 19.564 9.580 23.226 hybrid contribution -0.040 -0.588 -0.317 0.669 sum -8.100 18.976 9.263 22.616 Atomic orbital electron populations 1.21847 0.93448 1.02338 1.02240 1.21115 0.95725 0.93803 0.88030 0.94140 1.61914 1.04843 1.57054 1.02519 1.22477 0.99945 0.97501 0.92814 1.20847 0.87627 0.95782 0.97078 1.19472 1.06036 0.94746 0.94984 1.20717 0.95706 0.93086 0.97816 1.20764 1.09988 1.00164 0.92957 1.18189 0.92106 0.90462 0.88445 1.46952 1.69360 1.11165 1.06619 1.21590 1.01108 0.99596 0.82139 1.18756 0.94260 0.77454 0.94981 1.21802 0.96474 0.93151 1.46434 0.93376 1.25775 0.98957 0.99368 0.94575 1.70045 1.25751 1.13469 1.47366 0.85461 0.79365 0.78531 0.78051 1.19562 1.19872 1.20276 1.20758 1.10142 0.92329 1.00683 1.20873 0.96436 0.99075 0.91642 1.21380 1.01091 0.95728 0.93710 1.21192 1.00701 0.92658 1.01905 1.23172 0.90926 1.03524 1.04367 1.23067 1.00574 1.01094 0.95240 0.92630 0.91153 0.92010 0.94899 0.91871 0.91030 0.94078 0.89760 0.86457 0.88876 0.92965 0.92579 0.90375 0.97312 0.97192 0.92401 0.85019 0.84475 0.92394 0.93225 0.92407 0.89001 0.88874 0.88104 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.49 71.98 0.61 -1.66 16 2 C 0.12 2.21 1.95 44.92 0.09 2.30 16 3 H 0.04 0.71 8.07 -2.39 -0.02 0.69 16 4 N -0.54 -12.00 3.82 -901.60 -3.45 -15.45 16 5 C 0.02 0.42 8.52 127.69 1.09 1.51 16 6 C 0.11 2.66 4.91 85.56 0.42 3.08 16 7 C -0.15 -4.43 4.91 -19.84 -0.10 -4.52 16 8 C -0.05 -1.91 9.69 22.25 0.22 -1.70 16 9 C -0.22 -9.29 9.21 22.40 0.21 -9.09 16 10 C 0.21 8.84 6.55 38.21 0.25 9.09 16 11 N -0.63 -28.25 2.99 -726.58 -2.17 -30.42 16 12 C 0.10 3.48 10.19 127.77 1.30 4.78 16 13 C 0.27 14.31 4.91 85.63 0.42 14.73 16 14 C -0.54 -30.89 9.39 25.60 0.24 -30.65 16 15 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 16 C 0.01 0.71 5.46 84.65 0.46 1.17 16 17 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 18 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 C -0.22 -7.22 9.21 22.40 0.21 -7.01 16 23 C -0.06 -1.75 7.85 22.25 0.17 -1.57 16 24 C -0.12 -2.13 1.15 -52.18 -0.06 -2.19 16 25 C -0.11 -2.23 9.21 71.98 0.66 -1.56 16 26 C -0.18 -3.05 8.06 30.59 0.25 -2.81 16 27 C -0.16 -2.34 9.97 30.59 0.31 -2.04 16 28 H 0.05 1.03 7.72 -2.39 -0.02 1.01 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.92 6.44 -2.39 -0.02 0.91 16 31 H 0.03 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.06 1.50 5.51 -2.39 -0.01 1.49 16 33 H 0.07 1.40 6.56 -2.38 -0.02 1.38 16 34 H 0.04 0.87 8.06 -2.39 -0.02 0.85 16 35 H 0.08 1.96 5.45 -2.39 -0.01 1.95 16 36 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.09 4.63 6.14 -2.91 -0.02 4.61 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 40 H 0.08 2.34 6.20 -2.39 -0.01 2.32 16 41 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 42 H 0.01 0.58 6.20 -2.39 -0.01 0.57 16 43 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.13 3.80 6.14 -2.91 -0.02 3.78 16 45 H 0.14 3.04 7.88 -2.91 -0.02 3.02 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 1.00 7.91 -2.39 -0.02 0.98 16 48 H 0.06 1.47 7.39 -2.38 -0.02 1.46 16 49 H 0.09 1.58 8.06 -2.39 -0.02 1.56 16 50 H 0.09 1.49 8.05 -2.39 -0.02 1.48 16 51 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 52 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -63.45 401.49 4.30 -59.14 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.87 Total: 22.80 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 6.74 Total: -28.15 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -5.33 Total: -100.63 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.45 4.30 -59.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091900741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.950 kcal (2) G-P(sol) polarization free energy of solvation -63.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds