Wall clock time and date at job start Tue Mar 31 2020 11:31:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09006 * 109.47258 * 2 1
4 4 N 1.46891 * 109.47243 * 119.99932 * 2 1 3
5 5 C 1.46909 * 111.00183 * 173.85571 * 4 2 1
6 6 C 1.46897 * 111.00071 * 297.80931 * 4 2 1
7 7 C 1.50705 * 109.47101 * 170.00065 * 6 4 2
8 8 C 1.38282 * 119.92259 * 269.72653 * 7 6 4
9 9 C 1.38112 * 120.07149 * 179.72588 * 8 7 6
10 10 C 1.38910 * 119.92257 * 0.55114 * 9 8 7
11 11 N 1.39679 * 120.06942 * 179.74855 * 10 9 8
12 12 C 1.46500 * 119.99652 * 179.97438 * 11 10 9
13 13 C 1.46495 * 120.00120 * 359.97438 * 11 10 9
14 14 C 1.50697 * 109.47728 * 90.00103 * 13 11 10
15 15 H 1.08002 * 119.99555 * 359.97438 * 14 13 11
16 16 C 1.37870 * 120.00370 * 179.97438 * 14 13 11
17 17 N 1.31513 * 120.00061 * 359.97438 * 16 14 13
18 18 Si 1.86806 * 120.00185 * 179.97438 * 16 14 13
19 19 H 1.48497 * 109.46933 * 90.00082 * 18 16 14
20 20 H 1.48501 * 109.47099 * 209.99890 * 18 16 14
21 21 H 1.48498 * 109.46936 * 329.99978 * 18 16 14
22 22 C 1.38907 * 119.85076 * 359.72247 * 10 9 8
23 23 C 1.38099 * 119.93072 * 0.02562 * 22 10 9
24 24 C 1.53003 * 109.47015 * 240.00091 * 2 1 3
25 25 C 1.53001 * 115.54961 * 294.52839 * 24 2 1
26 26 C 1.53005 * 117.49988 * 148.85959 * 24 2 1
27 27 C 1.53002 * 117.49814 * 80.19871 * 24 2 1
28 28 H 1.08998 * 109.47138 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.47142 * 300.00155 * 1 2 3
30 30 H 1.08998 * 109.47177 * 59.99736 * 1 2 3
31 31 H 1.09002 * 109.47214 * 178.57518 * 5 4 2
32 32 H 1.09004 * 109.46772 * 58.57695 * 5 4 2
33 33 H 1.08995 * 109.47010 * 298.57854 * 5 4 2
34 34 H 1.09004 * 109.47340 * 289.99602 * 6 4 2
35 35 H 1.08996 * 109.47306 * 50.00136 * 6 4 2
36 36 H 1.07999 * 119.96343 * 359.97438 * 8 7 6
37 37 H 1.07999 * 120.03305 * 180.27462 * 9 8 7
38 38 H 1.08997 * 109.47034 * 89.99786 * 12 11 10
39 39 H 1.08995 * 109.47210 * 210.00002 * 12 11 10
40 40 H 1.08998 * 109.47224 * 329.99961 * 12 11 10
41 41 H 1.09003 * 109.47007 * 210.00224 * 13 11 10
42 42 H 1.09000 * 109.47284 * 329.99258 * 13 11 10
43 43 H 0.96998 * 120.00190 * 179.97438 * 17 16 14
44 44 H 1.08009 * 120.03166 * 179.97438 * 22 10 9
45 45 H 1.07995 * 119.96539 * 179.97438 * 23 22 10
46 46 H 1.08996 * 109.47021 * 57.79664 * 25 24 2
47 47 H 1.08999 * 109.47289 * 177.79947 * 25 24 2
48 48 H 1.08997 * 109.47050 * 297.79972 * 25 24 2
49 49 H 1.08998 * 117.49658 * 359.97438 * 26 24 2
50 50 H 1.08996 * 117.50103 * 145.01907 * 26 24 2
51 51 H 1.09001 * 117.49285 * 214.97693 * 27 24 2
52 52 H 1.08992 * 117.49900 * 359.97438 * 27 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0196 -0.6924 1.1994
5 6 3.4808 -0.8405 1.1622
6 6 1.5919 0.0033 2.4204
7 6 1.8960 -0.8558 3.6207
8 6 0.9511 -1.7529 4.0840
9 6 1.2287 -2.5458 5.1803
10 6 2.4542 -2.4330 5.8246
11 7 2.7360 -3.2296 6.9368
12 6 4.0292 -3.1098 7.6147
13 6 1.7386 -4.1848 7.4254
14 6 1.9362 -5.5123 6.7401
15 1 2.7257 -5.6323 6.0129
16 6 1.1093 -6.5736 7.0413
17 7 0.1483 -6.4276 7.9272
18 14 1.3539 -8.2190 6.1913
19 1 2.2962 -9.0499 6.9830
20 1 0.0486 -8.9186 6.0820
21 1 1.9114 -7.9963 4.8330
22 6 3.3988 -1.5267 5.3599
23 6 3.1168 -0.7407 4.2600
24 6 2.0400 -0.7212 -1.2493
25 6 1.7196 -2.2154 -1.3256
26 6 3.3706 -0.2529 -1.8417
27 6 2.0576 0.0654 -2.5615
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 3.8193 -1.3336 2.0734
32 1 3.9439 0.1435 1.0881
33 1 3.7632 -1.4410 0.2976
34 1 2.1267 0.9493 2.5059
35 1 0.5200 0.1948 2.3729
36 1 -0.0033 -1.8366 3.5856
37 1 0.4920 -3.2494 5.5389
38 1 3.9595 -2.3568 8.3997
39 1 4.2990 -4.0697 8.0549
40 1 4.7913 -2.8136 6.8939
41 1 1.8533 -4.3111 8.5020
42 1 0.7387 -3.8091 7.2082
43 1 -0.4337 -7.1742 8.1388
44 1 4.3524 -1.4364 5.8589
45 1 3.8506 -0.0356 3.8985
46 1 0.6406 -2.3589 -1.2700
47 1 2.0918 -2.6192 -2.2671
48 1 2.1982 -2.7325 -0.4940
49 1 3.8825 0.5693 -1.3417
50 1 4.0176 -1.0091 -2.2862
51 1 1.8414 -0.4817 -3.4791
52 1 1.7055 1.0966 -2.5348
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000091900742.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:53
Heat of formation + Delta-G solvation = 60.396425 kcal
Electronic energy + Delta-G solvation = -26847.174662 eV
Core-core repulsion = 23426.425684 eV
Total energy + Delta-G solvation = -3420.748978 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-39.73916 -38.80436 -36.57003 -35.06004 -32.69873 -31.19983 -30.41424 -29.85684
-28.46712 -27.79883 -26.62110 -24.97744 -24.14741 -22.76610 -22.48553 -21.67926
-21.09933 -19.49684 -18.68450 -16.63173 -16.43270 -16.05557 -15.67981 -15.19800
-14.93413 -14.74870 -14.31551 -14.16476 -13.82693 -13.67564 -13.35443 -12.97725
-12.93546 -12.84518 -12.52483 -12.33899 -12.14670 -12.03393 -11.96685 -11.68998
-11.63607 -11.50049 -11.43983 -11.34588 -11.21419 -10.94382 -10.77251 -10.67064
-10.63999 -10.22160 -10.16280 -9.86623 -9.76828 -9.71393 -8.79801 -8.49049
-8.23309 -8.14409 -6.43441 -5.99513 -4.15632 2.15013 2.25499 3.27619
3.34501 3.39630 3.52653 4.03413 4.18445 4.43210 4.47440 4.62009
4.69677 4.76424 4.95328 5.17192 5.21607 5.23315 5.31565 5.33441
5.42380 5.53658 5.56757 5.59572 5.64553 5.67570 5.69683 5.76522
5.80387 5.84834 5.86017 5.92509 5.98637 6.04472 6.05365 6.10633
6.11965 6.24413 6.30170 6.35641 6.43299 6.47715 6.67619 6.96232
7.04870 7.14570 7.23070 7.27940 7.31334 7.41972 7.64720 7.82938
8.17524 8.29447 8.51886 8.93578 9.51267 10.97313
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.014315 B = 0.003079 C = 0.002784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1955.457126 B = 9090.934321 C =10055.273134
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.119 3.881
3 H 0.034 0.966
4 N -0.525 5.525
5 C 0.023 3.977
6 C 0.107 3.893
7 C -0.164 4.164
8 C -0.051 4.051
9 C -0.188 4.188
10 C 0.241 3.759
11 N -0.616 5.616
12 C 0.099 3.901
13 C 0.249 3.751
14 C -0.530 4.530
15 H 0.059 0.941
16 C 0.062 3.938
17 N -0.896 5.896
18 Si 0.895 3.105
19 H -0.281 1.281
20 H -0.285 1.285
21 H -0.273 1.273
22 C -0.222 4.222
23 C -0.068 4.068
24 C -0.109 4.109
25 C -0.107 4.107
26 C -0.179 4.179
27 C -0.176 4.176
28 H 0.068 0.932
29 H 0.057 0.943
30 H 0.055 0.945
31 H 0.075 0.925
32 H 0.015 0.985
33 H 0.069 0.931
34 H 0.029 0.971
35 H 0.078 0.922
36 H 0.111 0.889
37 H 0.131 0.869
38 H 0.035 0.965
39 H 0.066 0.934
40 H 0.054 0.946
41 H 0.029 0.971
42 H 0.036 0.964
43 H 0.264 0.736
44 H 0.111 0.889
45 H 0.103 0.897
46 H 0.060 0.940
47 H 0.046 0.954
48 H 0.071 0.929
49 H 0.089 0.911
50 H 0.093 0.907
51 H 0.093 0.907
52 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.210 14.382 -15.451 21.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.011 3.989
3 H 0.052 0.948
4 N -0.249 5.249
5 C -0.125 4.125
6 C -0.020 4.020
7 C -0.167 4.167
8 C -0.071 4.071
9 C -0.210 4.210
10 C 0.134 3.866
11 N -0.322 5.322
12 C -0.045 4.045
13 C 0.129 3.871
14 C -0.569 4.569
15 H 0.077 0.923
16 C -0.141 4.141
17 N -0.535 5.535
18 Si 0.723 3.277
19 H -0.207 1.207
20 H -0.211 1.211
21 H -0.197 1.197
22 C -0.245 4.245
23 C -0.087 4.087
24 C -0.110 4.110
25 C -0.164 4.164
26 C -0.216 4.216
27 C -0.213 4.213
28 H 0.087 0.913
29 H 0.076 0.924
30 H 0.074 0.926
31 H 0.094 0.906
32 H 0.033 0.967
33 H 0.087 0.913
34 H 0.047 0.953
35 H 0.096 0.904
36 H 0.129 0.871
37 H 0.149 0.851
38 H 0.053 0.947
39 H 0.085 0.915
40 H 0.073 0.927
41 H 0.047 0.953
42 H 0.054 0.946
43 H 0.073 0.927
44 H 0.129 0.871
45 H 0.121 0.879
46 H 0.079 0.921
47 H 0.065 0.935
48 H 0.090 0.910
49 H 0.108 0.892
50 H 0.111 0.889
51 H 0.111 0.889
52 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 3.891 13.666 -15.140 20.764
hybrid contribution 0.598 -0.233 -0.408 0.761
sum 4.489 13.434 -15.548 21.032
Atomic orbital electron populations
1.21858 0.94142 1.02954 1.01242 1.21086 0.95464 0.93902 0.88495
0.94800 1.62016 1.11764 1.50418 1.00672 1.22478 0.87315 0.99413
1.03283 1.20906 1.00314 0.93290 0.87462 1.19110 0.95856 1.02847
0.98852 1.20615 0.98042 0.93770 0.94654 1.20885 0.97489 1.03749
0.98908 1.17939 0.92938 0.88894 0.86823 1.47089 1.16431 1.40034
1.28672 1.21457 0.85776 1.01142 0.96149 1.19274 0.86930 0.86224
0.94624 1.21581 1.15956 0.95536 1.23840 0.92268 1.24956 0.94953
0.99011 0.95134 1.69929 1.18638 1.32074 1.32831 0.86530 0.77535
0.83535 0.80104 1.20663 1.21072 1.19744 1.20509 0.99825 1.02493
1.01716 1.20497 0.95521 0.97898 0.94826 1.21429 1.00171 0.96246
0.93142 1.21231 1.01892 0.91912 1.01361 1.23097 0.90851 1.03372
1.04270 1.23047 1.01582 1.00849 0.95841 0.91347 0.92387 0.92558
0.90646 0.96673 0.91267 0.95317 0.90406 0.87128 0.85150 0.94693
0.91506 0.92747 0.95273 0.94620 0.92666 0.87061 0.87873 0.92122
0.93482 0.90995 0.89248 0.88880 0.88866 0.89174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.40 8.88 37.16 0.33 -1.07 16
2 C 0.12 1.24 1.94 -67.72 -0.13 1.11 16
3 H 0.03 0.36 8.09 -51.93 -0.42 -0.06 16
4 N -0.52 -6.45 4.18 -236.33 -0.99 -7.44 16
5 C 0.02 0.28 8.23 60.07 0.49 0.77 16
6 C 0.11 1.37 4.96 -4.98 -0.02 1.35 16
7 C -0.16 -2.55 4.90 -104.58 -0.51 -3.06 16
8 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16
9 C -0.19 -3.84 9.21 -39.38 -0.36 -4.20 16
10 C 0.24 4.91 6.55 -83.79 -0.55 4.37 16
11 N -0.62 -13.32 2.99 -181.01 -0.54 -13.86 16
12 C 0.10 1.75 10.19 59.85 0.61 2.36 16
13 C 0.25 6.29 4.91 -5.20 -0.03 6.27 16
14 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16
15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16
16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
17 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16
18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16
19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
21 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16
22 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16
23 C -0.07 -1.06 7.88 -39.61 -0.31 -1.37 16
24 C -0.11 -1.05 0.79 -154.50 -0.12 -1.17 16
25 C -0.11 -1.09 9.10 37.16 0.34 -0.75 16
26 C -0.18 -1.55 8.29 -26.69 -0.22 -1.78 16
27 C -0.18 -1.44 9.96 -26.69 -0.27 -1.70 16
28 H 0.07 0.72 7.06 -51.93 -0.37 0.35 16
29 H 0.06 0.55 6.25 -51.93 -0.32 0.23 16
30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.07 1.03 5.79 -51.93 -0.30 0.73 16
32 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16
33 H 0.07 0.80 5.45 -51.93 -0.28 0.51 16
34 H 0.03 0.35 8.06 -51.93 -0.42 -0.07 16
35 H 0.08 0.94 5.85 -51.93 -0.30 0.64 16
36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16
37 H 0.13 2.95 6.14 -52.49 -0.32 2.62 16
38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16
40 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16
41 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16
42 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16
43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
44 H 0.11 1.77 6.14 -52.48 -0.32 1.44 16
45 H 0.10 1.38 7.96 -52.49 -0.42 0.96 16
46 H 0.06 0.62 7.10 -51.93 -0.37 0.25 16
47 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16
48 H 0.07 0.86 7.16 -51.93 -0.37 0.48 16
49 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16
50 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
51 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
52 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 399.72 15.07 6.02 6.02
Total: -1.00 -28.49 399.72 -10.76 -39.25
By element:
Atomic # 1 Polarization: 11.40 SS G_CDS: -9.05 Total: 2.35 kcal
Atomic # 6 Polarization: -15.78 SS G_CDS: -1.92 Total: -17.70 kcal
Atomic # 7 Polarization: -45.56 SS G_CDS: -0.79 Total: -46.35 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -28.49 -10.76 -39.25 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000091900742.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.651 kcal
(2) G-P(sol) polarization free energy of solvation -28.493 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.158 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.396 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds