Wall clock time and date at job start Tue Mar 31 2020 11:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47258 * 2 1 4 4 N 1.46891 * 109.47243 * 119.99932 * 2 1 3 5 5 C 1.46909 * 111.00183 * 173.85571 * 4 2 1 6 6 C 1.46897 * 111.00071 * 297.80931 * 4 2 1 7 7 C 1.50705 * 109.47101 * 170.00065 * 6 4 2 8 8 C 1.38282 * 119.92259 * 269.72653 * 7 6 4 9 9 C 1.38112 * 120.07149 * 179.72588 * 8 7 6 10 10 C 1.38910 * 119.92257 * 0.55114 * 9 8 7 11 11 N 1.39679 * 120.06942 * 179.74855 * 10 9 8 12 12 C 1.46500 * 119.99652 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00120 * 359.97438 * 11 10 9 14 14 C 1.50697 * 109.47728 * 90.00103 * 13 11 10 15 15 H 1.08002 * 119.99555 * 359.97438 * 14 13 11 16 16 C 1.37870 * 120.00370 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00061 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00185 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46933 * 90.00082 * 18 16 14 20 20 H 1.48501 * 109.47099 * 209.99890 * 18 16 14 21 21 H 1.48498 * 109.46936 * 329.99978 * 18 16 14 22 22 C 1.38907 * 119.85076 * 359.72247 * 10 9 8 23 23 C 1.38099 * 119.93072 * 0.02562 * 22 10 9 24 24 C 1.53003 * 109.47015 * 240.00091 * 2 1 3 25 25 C 1.53001 * 115.54961 * 294.52839 * 24 2 1 26 26 C 1.53005 * 117.49988 * 148.85959 * 24 2 1 27 27 C 1.53002 * 117.49814 * 80.19871 * 24 2 1 28 28 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47142 * 300.00155 * 1 2 3 30 30 H 1.08998 * 109.47177 * 59.99736 * 1 2 3 31 31 H 1.09002 * 109.47214 * 178.57518 * 5 4 2 32 32 H 1.09004 * 109.46772 * 58.57695 * 5 4 2 33 33 H 1.08995 * 109.47010 * 298.57854 * 5 4 2 34 34 H 1.09004 * 109.47340 * 289.99602 * 6 4 2 35 35 H 1.08996 * 109.47306 * 50.00136 * 6 4 2 36 36 H 1.07999 * 119.96343 * 359.97438 * 8 7 6 37 37 H 1.07999 * 120.03305 * 180.27462 * 9 8 7 38 38 H 1.08997 * 109.47034 * 89.99786 * 12 11 10 39 39 H 1.08995 * 109.47210 * 210.00002 * 12 11 10 40 40 H 1.08998 * 109.47224 * 329.99961 * 12 11 10 41 41 H 1.09003 * 109.47007 * 210.00224 * 13 11 10 42 42 H 1.09000 * 109.47284 * 329.99258 * 13 11 10 43 43 H 0.96998 * 120.00190 * 179.97438 * 17 16 14 44 44 H 1.08009 * 120.03166 * 179.97438 * 22 10 9 45 45 H 1.07995 * 119.96539 * 179.97438 * 23 22 10 46 46 H 1.08996 * 109.47021 * 57.79664 * 25 24 2 47 47 H 1.08999 * 109.47289 * 177.79947 * 25 24 2 48 48 H 1.08997 * 109.47050 * 297.79972 * 25 24 2 49 49 H 1.08998 * 117.49658 * 359.97438 * 26 24 2 50 50 H 1.08996 * 117.50103 * 145.01907 * 26 24 2 51 51 H 1.09001 * 117.49285 * 214.97693 * 27 24 2 52 52 H 1.08992 * 117.49900 * 359.97438 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.4808 -0.8405 1.1622 6 6 1.5919 0.0033 2.4204 7 6 1.8960 -0.8558 3.6207 8 6 0.9511 -1.7529 4.0840 9 6 1.2287 -2.5458 5.1803 10 6 2.4542 -2.4330 5.8246 11 7 2.7360 -3.2296 6.9368 12 6 4.0292 -3.1098 7.6147 13 6 1.7386 -4.1848 7.4254 14 6 1.9362 -5.5123 6.7401 15 1 2.7257 -5.6323 6.0129 16 6 1.1093 -6.5736 7.0413 17 7 0.1483 -6.4276 7.9272 18 14 1.3539 -8.2190 6.1913 19 1 2.2962 -9.0499 6.9830 20 1 0.0486 -8.9186 6.0820 21 1 1.9114 -7.9963 4.8330 22 6 3.3988 -1.5267 5.3599 23 6 3.1168 -0.7407 4.2600 24 6 2.0400 -0.7212 -1.2493 25 6 1.7196 -2.2154 -1.3256 26 6 3.3706 -0.2529 -1.8417 27 6 2.0576 0.0654 -2.5615 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.8193 -1.3336 2.0734 32 1 3.9439 0.1435 1.0881 33 1 3.7632 -1.4410 0.2976 34 1 2.1267 0.9493 2.5059 35 1 0.5200 0.1948 2.3729 36 1 -0.0033 -1.8366 3.5856 37 1 0.4920 -3.2494 5.5389 38 1 3.9595 -2.3568 8.3997 39 1 4.2990 -4.0697 8.0549 40 1 4.7913 -2.8136 6.8939 41 1 1.8533 -4.3111 8.5020 42 1 0.7387 -3.8091 7.2082 43 1 -0.4337 -7.1742 8.1388 44 1 4.3524 -1.4364 5.8589 45 1 3.8506 -0.0356 3.8985 46 1 0.6406 -2.3589 -1.2700 47 1 2.0918 -2.6192 -2.2671 48 1 2.1982 -2.7325 -0.4940 49 1 3.8825 0.5693 -1.3417 50 1 4.0176 -1.0091 -2.2862 51 1 1.8414 -0.4817 -3.4791 52 1 1.7055 1.0966 -2.5348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091900742.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:52 Heat of formation + Delta-G solvation = 47.211250 kcal Electronic energy + Delta-G solvation = -26847.746414 eV Core-core repulsion = 23426.425684 eV Total energy + Delta-G solvation = -3421.320730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76909 -40.00667 -37.79016 -36.32857 -34.72939 -32.19472 -31.87971 -31.01830 -29.66095 -29.24752 -27.83357 -26.43611 -25.31527 -24.19510 -23.20001 -23.02846 -22.33713 -20.91026 -19.45754 -18.63241 -18.07098 -17.02165 -16.84119 -16.52703 -16.19690 -15.84894 -15.69387 -15.33319 -15.25009 -14.94351 -14.51045 -14.35347 -14.25374 -14.02970 -13.84662 -13.40494 -13.25348 -13.17026 -13.09528 -13.00211 -12.88127 -12.67548 -12.61794 -12.54247 -12.46263 -12.38778 -12.27068 -12.17964 -11.79471 -11.74118 -11.58018 -11.35027 -10.91278 -10.63853 -10.48155 -10.36293 -9.63108 -9.08590 -8.35493 -7.78104 -6.37128 0.73088 0.86268 1.36382 1.37928 1.49076 2.34604 2.64616 2.76482 3.05871 3.06760 3.40328 3.74422 3.95541 4.03074 4.08093 4.15821 4.18939 4.24386 4.39421 4.44397 4.46823 4.51183 4.58030 4.66444 4.71824 4.75631 4.81022 4.83465 4.87156 4.91313 4.93247 4.97635 5.01963 5.05298 5.06125 5.12133 5.15887 5.19880 5.21556 5.28943 5.30265 5.34571 5.42935 5.53679 5.60701 5.69052 5.71193 5.95703 6.07795 6.20832 6.28710 6.35375 6.51343 6.83542 6.95505 7.34811 8.83568 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.003079 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.457126 B = 9090.934321 C =10055.273134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.121 3.879 3 H 0.040 0.960 4 N -0.538 5.538 5 C 0.028 3.972 6 C 0.111 3.889 7 C -0.150 4.150 8 C -0.055 4.055 9 C -0.216 4.216 10 C 0.213 3.787 11 N -0.633 5.633 12 C 0.099 3.901 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.048 0.952 16 C 0.013 3.987 17 N -0.927 5.927 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.273 1.273 22 C -0.217 4.217 23 C -0.060 4.060 24 C -0.122 4.122 25 C -0.103 4.103 26 C -0.177 4.177 27 C -0.164 4.164 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.100 0.900 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 16.021 -17.854 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 H 0.058 0.942 4 N -0.263 5.263 5 C -0.120 4.120 6 C -0.016 4.016 7 C -0.152 4.152 8 C -0.074 4.074 9 C -0.239 4.239 10 C 0.108 3.892 11 N -0.341 5.341 12 C -0.044 4.044 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.066 0.934 16 C -0.186 4.186 17 N -0.567 5.567 18 Si 0.785 3.215 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.198 1.198 22 C -0.240 4.240 23 C -0.079 4.079 24 C -0.122 4.122 25 C -0.160 4.160 26 C -0.214 4.214 27 C -0.201 4.201 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.110 0.890 50 H 0.113 0.887 51 H 0.118 0.882 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.310 15.336 -17.563 23.913 hybrid contribution 0.151 -0.634 0.236 0.693 sum 5.461 14.702 -17.327 23.371 Atomic orbital electron populations 1.21845 0.93802 1.02333 1.02018 1.21106 0.95703 0.93969 0.87860 0.94213 1.61951 1.12087 1.51104 1.01131 1.22410 0.87200 0.99961 1.02471 1.20872 1.01147 0.93087 0.86506 1.19446 0.95083 1.01548 0.99168 1.20752 0.99153 0.93742 0.93795 1.20770 0.97502 1.04774 1.00845 1.18195 0.93781 0.90141 0.87093 1.46956 1.17009 1.40248 1.29890 1.21588 0.84637 1.01222 0.96983 1.18755 0.87073 0.86468 0.93154 1.21771 1.15669 0.96826 1.23684 0.93388 1.25771 0.94578 1.02567 0.95719 1.70033 1.19384 1.33238 1.34009 0.85515 0.77805 0.79245 0.78889 1.19503 1.20329 1.19781 1.20756 0.99787 1.01439 1.01988 1.20860 0.95980 0.97475 0.93627 1.21365 1.01405 0.95758 0.93707 1.21161 1.01366 0.92569 1.00929 1.23126 0.90770 1.03392 1.04097 1.23106 1.00742 1.01075 0.95176 0.92642 0.92309 0.91108 0.92372 0.95331 0.91079 0.93754 0.89679 0.86180 0.88843 0.92955 0.92575 0.90400 0.97310 0.97157 0.92377 0.85063 0.84577 0.92614 0.92555 0.93122 0.88989 0.88651 0.88151 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.88 71.98 0.64 -1.83 16 2 C 0.12 2.22 1.94 44.92 0.09 2.31 16 3 H 0.04 0.70 8.09 -2.38 -0.02 0.68 16 4 N -0.54 -12.05 4.18 -901.60 -3.77 -15.82 16 5 C 0.03 0.59 8.23 127.69 1.05 1.64 16 6 C 0.11 2.54 4.96 85.56 0.42 2.96 16 7 C -0.15 -4.40 4.90 -19.84 -0.10 -4.50 16 8 C -0.06 -1.94 9.69 22.25 0.22 -1.73 16 9 C -0.22 -9.28 9.21 22.40 0.21 -9.08 16 10 C 0.21 8.84 6.55 38.21 0.25 9.09 16 11 N -0.63 -28.28 2.99 -726.59 -2.17 -30.45 16 12 C 0.10 3.49 10.19 127.77 1.30 4.79 16 13 C 0.27 14.31 4.91 85.63 0.42 14.73 16 14 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 15 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 16 C 0.01 0.73 5.46 84.65 0.46 1.19 16 17 N -0.93 -55.11 13.29 21.44 0.28 -54.83 16 18 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 C -0.22 -7.26 9.21 22.40 0.21 -7.06 16 23 C -0.06 -1.73 7.88 22.25 0.18 -1.55 16 24 C -0.12 -2.05 0.79 -52.18 -0.04 -2.09 16 25 C -0.10 -1.98 9.10 71.98 0.66 -1.33 16 26 C -0.18 -2.59 8.29 30.62 0.25 -2.34 16 27 C -0.16 -2.19 9.96 30.62 0.30 -1.88 16 28 H 0.05 1.10 7.06 -2.39 -0.02 1.09 16 29 H 0.06 0.99 6.25 -2.39 -0.01 0.98 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.45 5.79 -2.39 -0.01 1.43 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 1.50 5.45 -2.39 -0.01 1.49 16 34 H 0.04 0.91 8.06 -2.38 -0.02 0.89 16 35 H 0.08 1.85 5.85 -2.39 -0.01 1.84 16 36 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.09 4.63 6.14 -2.91 -0.02 4.62 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 40 H 0.08 2.34 6.20 -2.39 -0.01 2.32 16 41 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 42 H 0.01 0.60 6.20 -2.39 -0.01 0.59 16 43 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.13 3.81 6.14 -2.91 -0.02 3.79 16 45 H 0.14 3.05 7.96 -2.91 -0.02 3.03 16 46 H 0.05 1.10 7.10 -2.39 -0.02 1.08 16 47 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 48 H 0.05 1.18 7.16 -2.39 -0.02 1.16 16 49 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -63.47 399.72 4.00 -59.47 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.88 Total: 22.18 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 6.76 Total: -27.37 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -5.66 Total: -101.10 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -63.47 4.00 -59.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091900742.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.680 kcal (2) G-P(sol) polarization free energy of solvation -63.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds