Wall clock time and date at job start Tue Mar 31 2020 11:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 108.82386 * 2 1 4 4 C 1.54171 * 108.85137 * 241.59542 * 2 1 3 5 5 C 1.53820 * 111.96698 * 197.68098 * 4 2 1 6 6 C 1.50817 * 111.62222 * 319.04094 * 5 4 2 7 7 N 1.47634 * 108.05150 * 95.06110 * 6 5 4 8 8 C 1.46900 * 111.00241 * 150.35073 * 7 6 5 9 9 C 1.50701 * 109.46401 * 298.88626 * 8 7 6 10 10 C 1.38283 * 119.93000 * 269.72464 * 9 8 7 11 11 C 1.38101 * 120.08024 * 179.72829 * 10 9 8 12 12 C 1.38912 * 119.92121 * 0.55384 * 11 10 9 13 13 N 1.39675 * 120.07284 * 179.74965 * 12 11 10 14 14 C 1.46502 * 119.99682 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00115 * 359.97053 * 13 12 11 16 16 C 1.50707 * 109.46997 * 90.00473 * 15 13 12 17 17 H 1.08000 * 120.00015 * 0.02562 * 16 15 13 18 18 C 1.37882 * 119.99667 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00080 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99659 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47009 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47093 * 119.99950 * 20 18 16 23 23 H 1.48501 * 109.47061 * 240.00224 * 20 18 16 24 24 C 1.38909 * 119.85004 * 359.72036 * 12 11 10 25 25 C 1.38106 * 119.92816 * 0.02562 * 24 12 11 26 26 C 1.39785 * 114.75383 * 277.19732 * 7 6 5 27 27 C 1.50748 * 108.85401 * 118.50834 * 2 1 3 28 28 H 1.09002 * 109.46704 * 301.48974 * 1 2 3 29 29 H 1.08997 * 109.47094 * 61.49023 * 1 2 3 30 30 H 1.09002 * 109.47140 * 181.49509 * 1 2 3 31 31 H 1.08995 * 108.98372 * 318.32553 * 4 2 1 32 32 H 1.09000 * 108.97845 * 77.03956 * 4 2 1 33 33 H 1.08991 * 109.05238 * 79.59565 * 5 4 2 34 34 H 1.09006 * 109.04861 * 198.49513 * 5 4 2 35 35 H 1.08998 * 109.74576 * 335.42141 * 6 5 4 36 36 H 1.08997 * 109.74654 * 214.69691 * 6 5 4 37 37 H 1.08991 * 109.47278 * 58.88259 * 8 7 6 38 38 H 1.08996 * 109.47227 * 178.89357 * 8 7 6 39 39 H 1.08008 * 119.95865 * 359.97438 * 10 9 8 40 40 H 1.08001 * 120.04020 * 180.27380 * 11 10 9 41 41 H 1.09003 * 109.46975 * 89.99776 * 14 13 12 42 42 H 1.09000 * 109.47015 * 209.99475 * 14 13 12 43 43 H 1.09003 * 109.47251 * 329.99557 * 14 13 12 44 44 H 1.09008 * 109.47256 * 210.00290 * 15 13 12 45 45 H 1.08997 * 109.47207 * 330.00199 * 15 13 12 46 46 H 0.97001 * 119.99445 * 179.97438 * 19 18 16 47 47 H 1.08003 * 120.03357 * 180.02562 * 24 12 11 48 48 H 1.07998 * 119.96593 * 180.02562 * 25 24 12 49 49 H 1.09005 * 109.01588 * 182.86445 * 26 7 6 50 50 H 1.08998 * 109.02155 * 301.76100 * 26 7 6 51 51 H 1.08999 * 109.54600 * 93.96008 * 27 2 1 52 52 H 1.09001 * 109.62134 * 333.73423 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0282 -0.6940 -1.2834 5 6 3.5004 -1.1253 -1.1700 6 6 4.3363 -0.0737 -0.4843 7 7 4.4211 -0.4192 0.9485 8 6 5.6826 0.0573 1.5312 9 6 6.8411 -0.6025 0.8287 10 6 7.3467 -1.7981 1.3053 11 6 8.4046 -2.4083 0.6607 12 6 8.9685 -1.8138 -0.4610 13 7 10.0420 -2.4255 -1.1124 14 6 10.6350 -1.7973 -2.2956 15 6 10.5749 -3.6951 -0.6124 16 6 9.8493 -4.8393 -1.2725 17 1 9.0696 -4.6405 -1.9927 18 6 10.1818 -6.1398 -0.9576 19 7 11.1324 -6.3818 -0.0816 20 14 9.2820 -7.5580 -1.7752 21 1 8.2639 -7.0224 -2.7145 22 1 10.2539 -8.3956 -2.5229 23 1 8.6123 -8.3831 -0.7380 24 6 8.4619 -0.6098 -0.9338 25 6 7.4003 -0.0077 -0.2875 26 6 3.3277 -0.0070 1.7157 27 6 2.0172 -0.6809 1.2536 28 1 -0.3633 0.5368 0.8764 29 1 -0.3633 0.4905 -0.9030 30 1 -0.3633 -1.0273 0.0268 31 1 1.4142 -1.5748 -1.4713 32 1 1.9240 -0.0056 -2.1220 33 1 3.5566 -2.0522 -0.5994 34 1 3.8980 -1.2997 -2.1698 35 1 3.8669 0.9032 -0.6004 36 1 5.3358 -0.0568 -0.9188 37 1 5.7528 1.1383 1.4111 38 1 5.7104 -0.1931 2.5917 39 1 6.9110 -2.2573 2.1805 40 1 8.7961 -3.3443 1.0309 41 1 11.4391 -1.1289 -1.9876 42 1 11.0355 -2.5682 -2.9540 43 1 9.8718 -1.2275 -2.8256 44 1 11.6386 -3.7585 -0.8422 45 1 10.4327 -3.7490 0.4669 46 1 11.3660 -7.2968 0.1402 47 1 8.8978 -0.1452 -1.8060 48 1 7.0057 0.9281 -0.6548 49 1 3.5097 -0.2627 2.7596 50 1 3.2199 1.0741 1.6285 51 1 2.2022 -1.7351 1.0476 52 1 1.2642 -0.5890 2.0363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092586286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:00 Heat of formation + Delta-G solvation = 26.484538 kcal Electronic energy + Delta-G solvation = -26966.739420 eV Core-core repulsion = 23544.519913 eV Total energy + Delta-G solvation = -3422.219508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89445 -38.70553 -36.24553 -34.89485 -32.70186 -32.48080 -30.60772 -30.43041 -28.18893 -27.80253 -26.45785 -25.35282 -23.89327 -23.25868 -22.10443 -21.55740 -20.69051 -19.56608 -19.14179 -16.63615 -16.44530 -16.07695 -15.64459 -15.22356 -15.14633 -14.92102 -14.35241 -14.16562 -13.73245 -13.63940 -13.54926 -13.23352 -12.97044 -12.89416 -12.79258 -12.65214 -12.16916 -12.01413 -11.80711 -11.74822 -11.41912 -11.39634 -11.24717 -11.18508 -10.95810 -10.81676 -10.69072 -10.54575 -10.44670 -10.38344 -10.24899 -10.23635 -9.85087 -9.72284 -8.79462 -8.49955 -8.22398 -8.04790 -6.44583 -6.00407 -4.16283 2.12623 2.24448 3.26370 3.34536 3.39726 4.03969 4.17527 4.42557 4.60667 4.61051 4.71872 4.75659 5.03300 5.16941 5.22604 5.24566 5.27970 5.35380 5.40438 5.41423 5.53592 5.56090 5.58617 5.65928 5.73405 5.74875 5.79950 5.83405 5.88260 5.92437 6.02326 6.04518 6.06862 6.10049 6.13823 6.23242 6.29013 6.36531 6.42364 6.46415 6.51074 6.65646 6.96431 7.03902 7.18257 7.25748 7.30168 7.40609 7.57455 7.64226 7.82401 8.16728 8.28371 8.50756 8.93214 9.50663 10.96561 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.003159 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.711055 B = 8861.824380 C = 9789.969157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.061 0.939 4 C -0.112 4.112 5 C -0.118 4.118 6 C 0.060 3.940 7 N -0.549 5.549 8 C 0.116 3.884 9 C -0.165 4.165 10 C -0.051 4.051 11 C -0.187 4.187 12 C 0.241 3.759 13 N -0.616 5.616 14 C 0.099 3.901 15 C 0.249 3.751 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.222 4.222 25 C -0.070 4.070 26 C 0.078 3.922 27 C -0.114 4.114 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.263 0.737 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.067 0.933 50 H 0.012 0.988 51 H 0.075 0.925 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 14.795 1.094 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.066 4.066 7 N -0.274 5.274 8 C -0.010 4.010 9 C -0.168 4.168 10 C -0.071 4.071 11 C -0.210 4.210 12 C 0.134 3.866 13 N -0.322 5.322 14 C -0.045 4.045 15 C 0.129 3.871 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.245 4.245 25 C -0.089 4.089 26 C -0.052 4.052 27 C -0.152 4.152 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.130 0.870 48 H 0.123 0.877 49 H 0.085 0.915 50 H 0.030 0.970 51 H 0.094 0.906 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.971 14.067 1.093 20.572 hybrid contribution -0.465 -0.123 -0.576 0.750 sum -15.437 13.944 0.517 20.809 Atomic orbital electron populations 1.21943 0.95645 1.01643 1.01248 1.21019 0.95144 0.99730 0.95180 0.92014 1.21987 0.96540 0.99884 0.96521 1.21387 0.93617 1.00158 1.00388 1.21932 1.01126 0.96197 0.87390 1.58825 1.01860 1.64100 1.02576 1.20782 0.86863 0.95613 0.97750 1.19144 0.99818 0.98250 0.99624 1.20617 0.94534 0.93600 0.98312 1.20890 0.99978 1.02396 0.97721 1.17941 0.87085 0.90650 0.90894 1.47091 1.32382 1.24112 1.28594 1.21464 0.97027 0.97640 0.88410 1.19285 0.94098 0.78367 0.95351 1.21620 1.19835 0.90658 1.24732 0.92208 1.24963 0.95124 0.98863 0.95142 1.69940 1.30016 1.20498 1.32997 0.86477 0.79685 0.82119 0.79416 1.19705 1.20979 1.20822 1.20509 1.02286 0.97916 1.03782 1.20488 0.95285 0.98295 0.94845 1.20912 0.90926 0.96049 0.97295 1.21571 0.95875 1.01206 0.96506 0.92935 0.93082 0.92716 0.92342 0.92780 0.90463 0.92149 0.94901 0.89429 0.95181 0.90906 0.87103 0.85133 0.94673 0.91494 0.92735 0.95251 0.94619 0.92718 0.87015 0.87726 0.91482 0.96973 0.90590 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.80 37.16 0.33 -0.82 16 2 C -0.09 -0.85 2.21 -91.13 -0.20 -1.05 16 3 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 4 C -0.11 -1.10 5.28 -25.69 -0.14 -1.24 16 5 C -0.12 -1.39 5.41 -27.40 -0.15 -1.54 16 6 C 0.06 0.73 5.16 -4.52 -0.02 0.71 16 7 N -0.55 -6.82 3.96 -241.45 -0.96 -7.77 16 8 C 0.12 1.48 5.13 -4.98 -0.03 1.45 16 9 C -0.17 -2.55 4.88 -104.59 -0.51 -3.06 16 10 C -0.05 -0.89 9.69 -39.62 -0.38 -1.27 16 11 C -0.19 -3.80 9.21 -39.38 -0.36 -4.17 16 12 C 0.24 4.88 6.55 -83.79 -0.55 4.33 16 13 N -0.62 -13.22 2.99 -181.00 -0.54 -13.76 16 14 C 0.10 1.74 10.19 59.85 0.61 2.35 16 15 C 0.25 6.25 4.91 -5.19 -0.03 6.23 16 16 C -0.53 -14.50 9.39 -34.43 -0.32 -14.83 16 17 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -25.74 13.29 55.43 0.74 -25.00 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.22 -3.83 9.21 -39.38 -0.36 -4.19 16 25 C -0.07 -1.07 7.71 -39.61 -0.31 -1.38 16 26 C 0.08 0.82 4.93 -6.74 -0.03 0.79 16 27 C -0.11 -1.10 5.16 -27.11 -0.14 -1.24 16 28 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.56 7.98 -51.93 -0.41 0.15 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.05 7.26 -51.93 -0.38 0.67 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.38 6.66 -51.93 -0.35 0.03 16 36 H 0.09 1.17 4.46 -51.93 -0.23 0.94 16 37 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.07 0.88 7.77 -51.93 -0.40 0.47 16 39 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.13 2.94 6.14 -52.49 -0.32 2.61 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 43 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 44 H 0.03 0.77 8.07 -51.92 -0.42 0.36 16 45 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.11 1.75 6.14 -52.48 -0.32 1.42 16 48 H 0.10 1.36 7.54 -52.49 -0.40 0.97 16 49 H 0.07 0.68 7.80 -51.93 -0.40 0.27 16 50 H 0.01 0.13 7.54 -51.93 -0.39 -0.26 16 51 H 0.08 0.84 7.11 -51.93 -0.37 0.47 16 52 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -28.33 390.63 -11.71 -40.04 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -9.12 Total: 1.53 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -2.69 Total: -17.32 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.76 Total: -46.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.33 -11.71 -40.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092586286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.526 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds