Wall clock time and date at job start Tue Mar 31 2020 11:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 108.82386 * 2 1 4 4 C 1.54171 * 108.85137 * 241.59542 * 2 1 3 5 5 C 1.53820 * 111.96698 * 197.68098 * 4 2 1 6 6 C 1.50817 * 111.62222 * 319.04094 * 5 4 2 7 7 N 1.47634 * 108.05150 * 95.06110 * 6 5 4 8 8 C 1.46900 * 111.00241 * 150.35073 * 7 6 5 9 9 C 1.50701 * 109.46401 * 298.88626 * 8 7 6 10 10 C 1.38283 * 119.93000 * 269.72464 * 9 8 7 11 11 C 1.38101 * 120.08024 * 179.72829 * 10 9 8 12 12 C 1.38912 * 119.92121 * 0.55384 * 11 10 9 13 13 N 1.39675 * 120.07284 * 179.74965 * 12 11 10 14 14 C 1.46502 * 119.99682 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00115 * 359.97053 * 13 12 11 16 16 C 1.50707 * 109.46997 * 90.00473 * 15 13 12 17 17 H 1.08000 * 120.00015 * 0.02562 * 16 15 13 18 18 C 1.37882 * 119.99667 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00080 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99659 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47009 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47093 * 119.99950 * 20 18 16 23 23 H 1.48501 * 109.47061 * 240.00224 * 20 18 16 24 24 C 1.38909 * 119.85004 * 359.72036 * 12 11 10 25 25 C 1.38106 * 119.92816 * 0.02562 * 24 12 11 26 26 C 1.39785 * 114.75383 * 277.19732 * 7 6 5 27 27 C 1.50748 * 108.85401 * 118.50834 * 2 1 3 28 28 H 1.09002 * 109.46704 * 301.48974 * 1 2 3 29 29 H 1.08997 * 109.47094 * 61.49023 * 1 2 3 30 30 H 1.09002 * 109.47140 * 181.49509 * 1 2 3 31 31 H 1.08995 * 108.98372 * 318.32553 * 4 2 1 32 32 H 1.09000 * 108.97845 * 77.03956 * 4 2 1 33 33 H 1.08991 * 109.05238 * 79.59565 * 5 4 2 34 34 H 1.09006 * 109.04861 * 198.49513 * 5 4 2 35 35 H 1.08998 * 109.74576 * 335.42141 * 6 5 4 36 36 H 1.08997 * 109.74654 * 214.69691 * 6 5 4 37 37 H 1.08991 * 109.47278 * 58.88259 * 8 7 6 38 38 H 1.08996 * 109.47227 * 178.89357 * 8 7 6 39 39 H 1.08008 * 119.95865 * 359.97438 * 10 9 8 40 40 H 1.08001 * 120.04020 * 180.27380 * 11 10 9 41 41 H 1.09003 * 109.46975 * 89.99776 * 14 13 12 42 42 H 1.09000 * 109.47015 * 209.99475 * 14 13 12 43 43 H 1.09003 * 109.47251 * 329.99557 * 14 13 12 44 44 H 1.09008 * 109.47256 * 210.00290 * 15 13 12 45 45 H 1.08997 * 109.47207 * 330.00199 * 15 13 12 46 46 H 0.97001 * 119.99445 * 179.97438 * 19 18 16 47 47 H 1.08003 * 120.03357 * 180.02562 * 24 12 11 48 48 H 1.07998 * 119.96593 * 180.02562 * 25 24 12 49 49 H 1.09005 * 109.01588 * 182.86445 * 26 7 6 50 50 H 1.08998 * 109.02155 * 301.76100 * 26 7 6 51 51 H 1.08999 * 109.54600 * 93.96008 * 27 2 1 52 52 H 1.09001 * 109.62134 * 333.73423 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0282 -0.6940 -1.2834 5 6 3.5004 -1.1253 -1.1700 6 6 4.3363 -0.0737 -0.4843 7 7 4.4211 -0.4192 0.9485 8 6 5.6826 0.0573 1.5312 9 6 6.8411 -0.6025 0.8287 10 6 7.3467 -1.7981 1.3053 11 6 8.4046 -2.4083 0.6607 12 6 8.9685 -1.8138 -0.4610 13 7 10.0420 -2.4255 -1.1124 14 6 10.6350 -1.7973 -2.2956 15 6 10.5749 -3.6951 -0.6124 16 6 9.8493 -4.8393 -1.2725 17 1 9.0696 -4.6405 -1.9927 18 6 10.1818 -6.1398 -0.9576 19 7 11.1324 -6.3818 -0.0816 20 14 9.2820 -7.5580 -1.7752 21 1 8.2639 -7.0224 -2.7145 22 1 10.2539 -8.3956 -2.5229 23 1 8.6123 -8.3831 -0.7380 24 6 8.4619 -0.6098 -0.9338 25 6 7.4003 -0.0077 -0.2875 26 6 3.3277 -0.0070 1.7157 27 6 2.0172 -0.6809 1.2536 28 1 -0.3633 0.5368 0.8764 29 1 -0.3633 0.4905 -0.9030 30 1 -0.3633 -1.0273 0.0268 31 1 1.4142 -1.5748 -1.4713 32 1 1.9240 -0.0056 -2.1220 33 1 3.5566 -2.0522 -0.5994 34 1 3.8980 -1.2997 -2.1698 35 1 3.8669 0.9032 -0.6004 36 1 5.3358 -0.0568 -0.9188 37 1 5.7528 1.1383 1.4111 38 1 5.7104 -0.1931 2.5917 39 1 6.9110 -2.2573 2.1805 40 1 8.7961 -3.3443 1.0309 41 1 11.4391 -1.1289 -1.9876 42 1 11.0355 -2.5682 -2.9540 43 1 9.8718 -1.2275 -2.8256 44 1 11.6386 -3.7585 -0.8422 45 1 10.4327 -3.7490 0.4669 46 1 11.3660 -7.2968 0.1402 47 1 8.8978 -0.1452 -1.8060 48 1 7.0057 0.9281 -0.6548 49 1 3.5097 -0.2627 2.7596 50 1 3.2199 1.0741 1.6285 51 1 2.2022 -1.7351 1.0476 52 1 1.2642 -0.5890 2.0363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092586286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:59 Heat of formation + Delta-G solvation = 13.519833 kcal Electronic energy + Delta-G solvation = -26967.301612 eV Core-core repulsion = 23544.519913 eV Total energy + Delta-G solvation = -3422.781700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94867 -39.96961 -37.55464 -36.04060 -34.72364 -33.34696 -31.88345 -31.83049 -29.67773 -29.11771 -27.44184 -26.73915 -25.38817 -24.11579 -23.55873 -22.98370 -21.61064 -21.00778 -19.95938 -18.63688 -18.07838 -17.04043 -16.91039 -16.56777 -16.15150 -16.05731 -15.83476 -15.41293 -15.31536 -14.70287 -14.65146 -14.47964 -14.30610 -14.02509 -13.92080 -13.63045 -13.60871 -13.16613 -13.13322 -13.04658 -12.83934 -12.68965 -12.60978 -12.54823 -12.30002 -12.21769 -12.12479 -11.81424 -11.72156 -11.48386 -11.36146 -11.28137 -11.20455 -11.05012 -10.64608 -10.35600 -9.61812 -8.97587 -8.35961 -7.78331 -6.37364 0.72279 0.86070 1.35409 1.37344 1.49499 2.34294 2.64672 2.96034 3.06065 3.38137 3.83557 3.94362 3.99061 4.07030 4.10157 4.22806 4.29682 4.34739 4.41116 4.44125 4.51572 4.61151 4.66268 4.70479 4.73437 4.74887 4.76998 4.84168 4.86287 4.91749 4.92064 5.00373 5.02865 5.11917 5.13472 5.14888 5.21003 5.27068 5.28176 5.30309 5.34223 5.47061 5.53138 5.60484 5.65120 5.68684 5.71086 5.96105 6.07505 6.21440 6.32016 6.51103 6.68736 6.83545 6.95522 7.34582 8.83300 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.003159 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.711055 B = 8861.824380 C = 9789.969157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.116 4.116 6 C 0.063 3.937 7 N -0.562 5.562 8 C 0.119 3.881 9 C -0.152 4.152 10 C -0.055 4.055 11 C -0.216 4.216 12 C 0.213 3.787 13 N -0.633 5.633 14 C 0.098 3.902 15 C 0.267 3.733 16 C -0.539 4.539 17 H 0.048 0.952 18 C 0.012 3.988 19 N -0.927 5.927 20 Si 0.961 3.039 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.277 1.277 24 C -0.216 4.216 25 C -0.061 4.061 26 C 0.076 3.924 27 C -0.110 4.110 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.009 0.991 45 H 0.010 0.990 46 H 0.267 0.733 47 H 0.132 0.868 48 H 0.140 0.860 49 H 0.071 0.929 50 H 0.021 0.979 51 H 0.058 0.942 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.686 16.920 0.502 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.064 4.064 7 N -0.286 5.286 8 C -0.007 4.007 9 C -0.154 4.154 10 C -0.075 4.075 11 C -0.239 4.239 12 C 0.108 3.892 13 N -0.341 5.341 14 C -0.045 4.045 15 C 0.145 3.855 16 C -0.578 4.578 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.567 5.567 20 Si 0.786 3.214 21 H -0.196 1.196 22 H -0.199 1.199 23 H -0.203 1.203 24 C -0.239 4.239 25 C -0.080 4.080 26 C -0.053 4.053 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.076 0.924 47 H 0.150 0.850 48 H 0.157 0.843 49 H 0.090 0.910 50 H 0.039 0.961 51 H 0.077 0.923 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.434 16.226 0.500 23.822 hybrid contribution 0.215 -0.696 -0.334 0.801 sum -17.219 15.530 0.166 23.189 Atomic orbital electron populations 1.21909 0.94495 1.01806 1.01964 1.20988 0.96091 0.99362 0.94366 0.91950 1.21955 0.95023 1.00173 0.97416 1.21350 0.95156 0.99241 0.99643 1.21889 1.00494 0.96790 0.87190 1.58776 1.02231 1.64739 1.02884 1.20775 0.85902 0.96229 0.97813 1.19477 0.99864 0.96953 0.99142 1.20755 0.93752 0.94443 0.98521 1.20768 1.01917 1.01940 0.99264 1.18199 0.87500 0.92090 0.91391 1.46955 1.33541 1.23416 1.30155 1.21595 0.98119 0.97556 0.87182 1.18763 0.92767 0.80156 0.93810 1.21800 1.19623 0.91847 1.24528 0.93384 1.25773 0.95848 1.01395 0.95660 1.70042 1.31255 1.21252 1.34129 0.85467 0.78588 0.78902 0.78487 1.19568 1.19852 1.20296 1.20760 1.02344 0.96549 1.04237 1.20867 0.94023 0.99093 0.94042 1.20967 0.90525 0.96549 0.97248 1.21549 0.95924 1.00045 0.97291 0.92066 0.92559 0.92852 0.92405 0.91891 0.92724 0.92667 0.93592 0.90610 0.93392 0.90081 0.86213 0.88879 0.92931 0.92595 0.90357 0.97289 0.97164 0.92391 0.84984 0.84278 0.91035 0.96116 0.92346 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.80 71.98 0.63 -1.23 16 2 C -0.09 -1.41 2.21 -11.13 -0.02 -1.43 16 3 H 0.06 1.00 6.57 -2.39 -0.02 0.98 16 4 C -0.11 -1.92 5.28 31.27 0.17 -1.75 16 5 C -0.12 -2.59 5.41 30.16 0.16 -2.43 16 6 C 0.06 1.37 5.16 85.45 0.44 1.81 16 7 N -0.56 -12.61 3.96 -917.81 -3.64 -16.25 16 8 C 0.12 2.69 5.13 85.56 0.44 3.13 16 9 C -0.15 -4.39 4.88 -19.84 -0.10 -4.49 16 10 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 11 C -0.22 -9.22 9.21 22.40 0.21 -9.02 16 12 C 0.21 8.78 6.55 38.21 0.25 9.03 16 13 N -0.63 -28.09 2.99 -726.55 -2.17 -30.26 16 14 C 0.10 3.45 10.19 127.77 1.30 4.76 16 15 C 0.27 14.24 4.91 85.64 0.42 14.66 16 16 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 17 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 18 C 0.01 0.70 5.46 84.66 0.46 1.17 16 19 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 20 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.22 -7.12 9.21 22.40 0.21 -6.91 16 25 C -0.06 -1.71 7.71 22.25 0.17 -1.54 16 26 C 0.08 1.41 4.93 88.07 0.43 1.84 16 27 C -0.11 -1.89 5.16 30.35 0.16 -1.73 16 28 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 1.03 7.98 -2.39 -0.02 1.01 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.46 7.26 -2.39 -0.02 1.45 16 34 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.05 0.89 6.66 -2.39 -0.02 0.88 16 36 H 0.08 1.82 4.46 -2.39 -0.01 1.81 16 37 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 38 H 0.08 1.73 7.77 -2.39 -0.02 1.71 16 39 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 40 H 0.09 4.60 6.14 -2.91 -0.02 4.58 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 43 H 0.08 2.32 6.20 -2.39 -0.01 2.31 16 44 H 0.01 0.51 8.07 -2.38 -0.02 0.49 16 45 H 0.01 0.60 6.20 -2.39 -0.01 0.58 16 46 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 47 H 0.13 3.76 6.14 -2.91 -0.02 3.74 16 48 H 0.14 2.99 7.54 -2.91 -0.02 2.97 16 49 H 0.07 1.26 7.80 -2.38 -0.02 1.24 16 50 H 0.02 0.36 7.54 -2.39 -0.02 0.34 16 51 H 0.06 1.22 7.11 -2.39 -0.02 1.20 16 52 H 0.08 1.12 7.69 -2.39 -0.02 1.11 16 Total: -1.00 -63.33 390.63 3.16 -60.17 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.87 Total: 20.70 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 5.79 Total: -26.42 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -5.53 Total: -101.28 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.33 3.16 -60.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092586286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.694 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds