Wall clock time and date at job start Tue Mar 31 2020 11:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.50282 * 2 1 4 4 C 1.53121 * 109.53186 * 239.90739 * 2 1 3 5 5 C 1.53123 * 109.15709 * 182.38186 * 4 2 1 6 6 C 1.53036 * 109.27910 * 57.65405 * 5 4 2 7 7 N 1.46848 * 109.52325 * 300.81822 * 6 5 4 8 8 C 1.46901 * 111.00109 * 185.83663 * 7 6 5 9 9 C 1.50701 * 109.46921 * 45.79068 * 8 7 6 10 10 C 1.38278 * 119.92611 * 269.72821 * 9 8 7 11 11 C 1.38105 * 120.07448 * 179.72685 * 10 9 8 12 12 C 1.38908 * 119.92667 * 0.54493 * 11 10 9 13 13 N 1.39672 * 120.07895 * 179.74781 * 12 11 10 14 14 C 1.46504 * 120.00235 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99961 * 359.97438 * 13 12 11 16 16 C 1.50708 * 109.46882 * 89.99846 * 15 13 12 17 17 H 1.07994 * 120.00129 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99702 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00238 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46879 * 89.99938 * 20 18 16 22 22 H 1.48499 * 109.47284 * 210.00019 * 20 18 16 23 23 H 1.48503 * 109.47400 * 330.00433 * 20 18 16 24 24 C 1.38921 * 119.84789 * 359.72756 * 12 11 10 25 25 C 1.38109 * 119.92317 * 359.97438 * 24 12 11 26 26 C 1.46849 * 111.19595 * 61.74468 * 7 6 5 27 27 H 1.09003 * 109.46322 * 178.24309 * 26 7 6 28 28 C 1.52991 * 109.46864 * 58.27309 * 26 7 6 29 29 H 1.09005 * 109.47191 * 299.91873 * 1 2 3 30 30 H 1.08997 * 109.47518 * 59.91761 * 1 2 3 31 31 H 1.09000 * 109.47332 * 179.91860 * 1 2 3 32 32 H 1.09001 * 109.52047 * 302.28291 * 4 2 1 33 33 H 1.08999 * 109.52725 * 62.41512 * 4 2 1 34 34 H 1.09005 * 109.50464 * 177.59262 * 5 4 2 35 35 H 1.09000 * 109.50386 * 297.67051 * 5 4 2 36 36 H 1.08997 * 109.46297 * 180.80471 * 6 5 4 37 37 H 1.09006 * 109.46210 * 60.83495 * 6 5 4 38 38 H 1.09002 * 109.47401 * 285.79096 * 8 7 6 39 39 H 1.09001 * 109.46874 * 165.79109 * 8 7 6 40 40 H 1.08001 * 119.96559 * 359.97301 * 10 9 8 41 41 H 1.08000 * 120.03659 * 180.26635 * 11 10 9 42 42 H 1.08999 * 109.46935 * 90.00041 * 14 13 12 43 43 H 1.08993 * 109.47432 * 210.00355 * 14 13 12 44 44 H 1.09008 * 109.46940 * 330.00702 * 14 13 12 45 45 H 1.08992 * 109.47368 * 209.99499 * 15 13 12 46 46 H 1.08995 * 109.47116 * 330.00415 * 15 13 12 47 47 H 0.97003 * 119.99951 * 180.02562 * 19 18 16 48 48 H 1.08003 * 120.03690 * 180.02562 * 24 12 11 49 49 H 1.07998 * 119.95621 * 179.97438 * 25 24 12 50 50 H 1.09006 * 109.47051 * 59.99535 * 28 26 7 51 51 H 1.08998 * 109.47459 * 179.97438 * 28 26 7 52 52 H 1.09010 * 109.47341 * 300.00417 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0419 -0.7236 -1.2486 5 6 3.5719 -0.7708 -1.2101 6 6 4.0237 -1.4715 0.0732 7 7 3.5093 -0.7408 1.2385 8 6 4.0372 -1.3042 2.4882 9 6 5.5200 -1.5345 2.3485 10 6 5.9884 -2.7483 1.8800 11 6 7.3464 -2.9607 1.7454 12 6 8.2424 -1.9574 2.0919 13 7 9.6166 -2.1707 1.9620 14 6 10.5602 -1.1112 2.3275 15 6 10.1146 -3.4538 1.4603 16 6 10.2374 -3.3929 -0.0405 17 1 9.9708 -2.4889 -0.5678 18 6 10.6891 -4.4915 -0.7403 19 7 11.0123 -5.5929 -0.0983 20 14 10.8407 -4.4163 -2.6006 21 1 12.1970 -3.9354 -2.9677 22 1 10.6248 -5.7706 -3.1701 23 1 9.8211 -3.4828 -3.1431 24 6 7.7686 -0.7412 2.5676 25 6 6.4091 -0.5333 2.6939 26 6 2.0410 -0.7231 1.2482 27 1 1.6899 -0.2020 2.1390 28 6 1.5137 -2.1592 1.2571 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6465 -1.7391 -1.2688 33 1 1.7154 -0.1877 -2.1398 34 1 3.9409 -1.3222 -2.0750 35 1 3.9679 0.2446 -1.2299 36 1 5.1128 -1.4941 0.1105 37 1 3.6388 -2.4913 0.0850 38 1 3.5406 -2.2516 2.6981 39 1 3.8531 -0.6083 3.3067 40 1 5.2914 -3.5297 1.6153 41 1 7.7114 -3.9074 1.3753 42 1 10.8288 -1.2108 3.3792 43 1 11.4570 -1.1957 1.7139 44 1 10.0966 -0.1387 2.1614 45 1 11.0918 -3.6601 1.8967 46 1 9.4189 -4.2463 1.7360 47 1 11.3305 -6.3657 -0.5907 48 1 8.4625 0.0411 2.8375 49 1 6.0401 0.4118 3.0640 50 1 1.8769 -2.6741 2.1466 51 1 0.4238 -2.1462 1.2648 52 1 1.8650 -2.6808 0.3666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092737300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:07 Heat of formation + Delta-G solvation = 26.213834 kcal Electronic energy + Delta-G solvation = -27254.829592 eV Core-core repulsion = 23832.598346 eV Total energy + Delta-G solvation = -3422.231246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12940 -38.76504 -36.05625 -34.11902 -32.66962 -32.47113 -30.46058 -30.15561 -28.15590 -27.79510 -26.41096 -25.81876 -24.37994 -22.78496 -22.39446 -21.44521 -21.12360 -19.48184 -18.35219 -16.63906 -16.45026 -16.13641 -15.81069 -15.25542 -14.77404 -14.51911 -14.30679 -14.05314 -13.97657 -13.70394 -13.38523 -13.05548 -12.92608 -12.86256 -12.78018 -12.59765 -12.34037 -12.13114 -11.95547 -11.67684 -11.55532 -11.41863 -11.39318 -11.25021 -10.93666 -10.85776 -10.69605 -10.68383 -10.51394 -10.27151 -10.17936 -10.10573 -9.87007 -9.74726 -8.82030 -8.51734 -8.25200 -8.06209 -6.45789 -6.02118 -4.18454 2.11027 2.22984 3.25224 3.32166 3.36811 4.01776 4.15800 4.40499 4.56038 4.64854 4.76196 4.86180 5.08357 5.17274 5.20556 5.23963 5.27321 5.34075 5.39540 5.49255 5.54975 5.57232 5.62509 5.63304 5.72653 5.75152 5.82257 5.83885 5.87891 5.92280 6.01179 6.02423 6.04579 6.08694 6.19175 6.19971 6.28950 6.36227 6.40072 6.44231 6.48678 6.65709 6.94264 7.03074 7.19735 7.21602 7.29187 7.31431 7.38329 7.60652 7.80161 8.14696 8.26579 8.48942 8.90835 9.48477 10.94575 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003366 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.616879 B = 8315.796714 C = 9473.375823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 H 0.076 0.924 4 C -0.116 4.116 5 C -0.117 4.117 6 C 0.049 3.951 7 N -0.526 5.526 8 C 0.107 3.893 9 C -0.172 4.172 10 C -0.067 4.067 11 C -0.188 4.188 12 C 0.242 3.758 13 N -0.616 5.616 14 C 0.098 3.902 15 C 0.249 3.751 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.223 4.223 25 C -0.052 4.052 26 C 0.086 3.914 27 H 0.077 0.923 28 C -0.193 4.193 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.030 0.970 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.056 0.944 51 H 0.060 0.940 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.430 9.730 3.337 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.079 4.079 7 N -0.249 5.249 8 C -0.019 4.019 9 C -0.175 4.175 10 C -0.086 4.086 11 C -0.210 4.210 12 C 0.135 3.865 13 N -0.321 5.321 14 C -0.046 4.046 15 C 0.129 3.871 16 C -0.570 4.570 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.246 4.246 25 C -0.072 4.072 26 C -0.023 4.023 27 H 0.095 0.905 28 C -0.251 4.251 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.148 0.852 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.073 0.927 48 H 0.131 0.869 49 H 0.127 0.873 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.934 9.976 3.256 19.922 hybrid contribution -0.015 -0.946 -1.073 1.431 sum -16.950 9.030 2.183 19.329 Atomic orbital electron populations 1.21880 0.95402 1.01779 1.01493 1.21131 0.94649 1.00015 0.94312 0.90578 1.21678 0.96126 1.00331 0.97257 1.21585 0.95134 1.01627 0.97168 1.22213 1.01508 0.94703 0.89440 1.62275 1.06122 1.54091 1.02441 1.20883 0.91777 0.97670 0.91596 1.19153 0.93768 0.95385 1.09167 1.20662 0.94717 0.95869 0.97387 1.20840 0.92213 1.00427 1.07528 1.17949 0.84466 0.92871 0.91230 1.47099 1.01449 1.16351 1.67226 1.21472 0.93708 0.90692 0.98703 1.19279 0.94841 0.79173 0.93788 1.21582 1.44111 0.99153 0.92115 0.92247 1.24960 0.95175 0.95188 0.98742 1.69932 1.44516 1.03099 1.35886 0.86533 0.78514 0.77406 0.85257 1.20611 1.21087 1.19762 1.20574 0.95594 0.97102 1.11349 1.20491 0.92110 0.97240 0.97343 1.21642 0.87824 0.94690 0.98131 0.90505 1.22573 1.01513 0.98742 1.02284 0.92777 0.92772 0.92526 0.92190 0.92313 0.91791 0.91348 0.89208 0.94930 0.94528 0.90991 0.87607 0.85160 0.94631 0.91481 0.92654 0.95233 0.94661 0.92652 0.86926 0.87261 0.92553 0.92100 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.83 37.16 0.33 -0.81 16 2 C -0.08 -0.78 2.66 -90.54 -0.24 -1.02 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.16 4.98 -26.61 -0.13 -1.30 16 5 C -0.12 -1.40 6.09 -26.65 -0.16 -1.56 16 6 C 0.05 0.65 4.28 -3.83 -0.02 0.64 16 7 N -0.53 -6.59 4.75 -228.12 -1.08 -7.67 16 8 C 0.11 1.39 5.30 -4.97 -0.03 1.36 16 9 C -0.17 -2.65 4.12 -104.59 -0.43 -3.08 16 10 C -0.07 -1.14 7.80 -39.62 -0.31 -1.45 16 11 C -0.19 -3.77 9.21 -39.38 -0.36 -4.13 16 12 C 0.24 4.89 6.55 -83.79 -0.55 4.34 16 13 N -0.62 -13.19 2.99 -181.00 -0.54 -13.73 16 14 C 0.10 1.73 10.19 59.85 0.61 2.34 16 15 C 0.25 6.24 4.91 -5.19 -0.03 6.21 16 16 C -0.53 -14.45 9.39 -34.44 -0.32 -14.78 16 17 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -25.62 13.29 55.43 0.74 -24.89 16 20 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.22 -3.90 9.21 -39.38 -0.36 -4.26 16 25 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 26 C 0.09 0.89 2.47 -67.73 -0.17 0.72 16 27 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 28 C -0.19 -1.88 7.83 37.15 0.29 -1.59 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 6.41 -51.93 -0.33 0.09 16 32 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.45 5.65 -51.93 -0.29 1.15 16 37 H 0.03 0.44 6.19 -51.93 -0.32 0.12 16 38 H 0.04 0.46 6.01 -51.93 -0.31 0.15 16 39 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 44 H 0.05 0.87 6.20 -51.92 -0.32 0.54 16 45 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 46 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.11 1.79 6.14 -52.48 -0.32 1.47 16 49 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 50 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 51 H 0.06 0.51 6.41 -51.93 -0.33 0.18 16 52 H 0.06 0.67 4.80 -51.92 -0.25 0.42 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -28.03 385.50 -11.29 -39.32 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.83 Total: 2.90 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.36 Total: -17.99 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.89 Total: -46.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.03 -11.29 -39.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092737300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.531 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds