Wall clock time and date at job start Tue Mar 31 2020 11:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.50282 * 2 1 4 4 C 1.53121 * 109.53186 * 239.90739 * 2 1 3 5 5 C 1.53123 * 109.15709 * 182.38186 * 4 2 1 6 6 C 1.53036 * 109.27910 * 57.65405 * 5 4 2 7 7 N 1.46848 * 109.52325 * 300.81822 * 6 5 4 8 8 C 1.46901 * 111.00109 * 185.83663 * 7 6 5 9 9 C 1.50701 * 109.46921 * 45.79068 * 8 7 6 10 10 C 1.38278 * 119.92611 * 269.72821 * 9 8 7 11 11 C 1.38105 * 120.07448 * 179.72685 * 10 9 8 12 12 C 1.38908 * 119.92667 * 0.54493 * 11 10 9 13 13 N 1.39672 * 120.07895 * 179.74781 * 12 11 10 14 14 C 1.46504 * 120.00235 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99961 * 359.97438 * 13 12 11 16 16 C 1.50708 * 109.46882 * 89.99846 * 15 13 12 17 17 H 1.07994 * 120.00129 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99702 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00238 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46879 * 89.99938 * 20 18 16 22 22 H 1.48499 * 109.47284 * 210.00019 * 20 18 16 23 23 H 1.48503 * 109.47400 * 330.00433 * 20 18 16 24 24 C 1.38921 * 119.84789 * 359.72756 * 12 11 10 25 25 C 1.38109 * 119.92317 * 359.97438 * 24 12 11 26 26 C 1.46849 * 111.19595 * 61.74468 * 7 6 5 27 27 H 1.09003 * 109.46322 * 178.24309 * 26 7 6 28 28 C 1.52991 * 109.46864 * 58.27309 * 26 7 6 29 29 H 1.09005 * 109.47191 * 299.91873 * 1 2 3 30 30 H 1.08997 * 109.47518 * 59.91761 * 1 2 3 31 31 H 1.09000 * 109.47332 * 179.91860 * 1 2 3 32 32 H 1.09001 * 109.52047 * 302.28291 * 4 2 1 33 33 H 1.08999 * 109.52725 * 62.41512 * 4 2 1 34 34 H 1.09005 * 109.50464 * 177.59262 * 5 4 2 35 35 H 1.09000 * 109.50386 * 297.67051 * 5 4 2 36 36 H 1.08997 * 109.46297 * 180.80471 * 6 5 4 37 37 H 1.09006 * 109.46210 * 60.83495 * 6 5 4 38 38 H 1.09002 * 109.47401 * 285.79096 * 8 7 6 39 39 H 1.09001 * 109.46874 * 165.79109 * 8 7 6 40 40 H 1.08001 * 119.96559 * 359.97301 * 10 9 8 41 41 H 1.08000 * 120.03659 * 180.26635 * 11 10 9 42 42 H 1.08999 * 109.46935 * 90.00041 * 14 13 12 43 43 H 1.08993 * 109.47432 * 210.00355 * 14 13 12 44 44 H 1.09008 * 109.46940 * 330.00702 * 14 13 12 45 45 H 1.08992 * 109.47368 * 209.99499 * 15 13 12 46 46 H 1.08995 * 109.47116 * 330.00415 * 15 13 12 47 47 H 0.97003 * 119.99951 * 180.02562 * 19 18 16 48 48 H 1.08003 * 120.03690 * 180.02562 * 24 12 11 49 49 H 1.07998 * 119.95621 * 179.97438 * 25 24 12 50 50 H 1.09006 * 109.47051 * 59.99535 * 28 26 7 51 51 H 1.08998 * 109.47459 * 179.97438 * 28 26 7 52 52 H 1.09010 * 109.47341 * 300.00417 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0419 -0.7236 -1.2486 5 6 3.5719 -0.7708 -1.2101 6 6 4.0237 -1.4715 0.0732 7 7 3.5093 -0.7408 1.2385 8 6 4.0372 -1.3042 2.4882 9 6 5.5200 -1.5345 2.3485 10 6 5.9884 -2.7483 1.8800 11 6 7.3464 -2.9607 1.7454 12 6 8.2424 -1.9574 2.0919 13 7 9.6166 -2.1707 1.9620 14 6 10.5602 -1.1112 2.3275 15 6 10.1146 -3.4538 1.4603 16 6 10.2374 -3.3929 -0.0405 17 1 9.9708 -2.4889 -0.5678 18 6 10.6891 -4.4915 -0.7403 19 7 11.0123 -5.5929 -0.0983 20 14 10.8407 -4.4163 -2.6006 21 1 12.1970 -3.9354 -2.9677 22 1 10.6248 -5.7706 -3.1701 23 1 9.8211 -3.4828 -3.1431 24 6 7.7686 -0.7412 2.5676 25 6 6.4091 -0.5333 2.6939 26 6 2.0410 -0.7231 1.2482 27 1 1.6899 -0.2020 2.1390 28 6 1.5137 -2.1592 1.2571 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6465 -1.7391 -1.2688 33 1 1.7154 -0.1877 -2.1398 34 1 3.9409 -1.3222 -2.0750 35 1 3.9679 0.2446 -1.2299 36 1 5.1128 -1.4941 0.1105 37 1 3.6388 -2.4913 0.0850 38 1 3.5406 -2.2516 2.6981 39 1 3.8531 -0.6083 3.3067 40 1 5.2914 -3.5297 1.6153 41 1 7.7114 -3.9074 1.3753 42 1 10.8288 -1.2108 3.3792 43 1 11.4570 -1.1957 1.7139 44 1 10.0966 -0.1387 2.1614 45 1 11.0918 -3.6601 1.8967 46 1 9.4189 -4.2463 1.7360 47 1 11.3305 -6.3657 -0.5907 48 1 8.4625 0.0411 2.8375 49 1 6.0401 0.4118 3.0640 50 1 1.8769 -2.6741 2.1466 51 1 0.4238 -2.1462 1.2648 52 1 1.8650 -2.6808 0.3666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092737300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:06 Heat of formation + Delta-G solvation = 12.658264 kcal Electronic energy + Delta-G solvation = -27255.417406 eV Core-core repulsion = 23832.598346 eV Total energy + Delta-G solvation = -3422.819060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16276 -40.08559 -37.49996 -35.31753 -34.58943 -33.36929 -31.90530 -31.41436 -29.65123 -29.05739 -27.49577 -26.87627 -25.94570 -24.24837 -23.38808 -22.87213 -22.24606 -20.88790 -19.21260 -18.64615 -18.07538 -17.09995 -16.90977 -16.80182 -16.18581 -15.80448 -15.48929 -15.34459 -15.12828 -14.99623 -14.60131 -14.39319 -14.28169 -14.05101 -13.90953 -13.67401 -13.45664 -13.29537 -13.18828 -13.02964 -12.92155 -12.69940 -12.67130 -12.54338 -12.44987 -12.36142 -12.15912 -11.94403 -11.74579 -11.56777 -11.44486 -11.31934 -11.10585 -10.95020 -10.65389 -10.37639 -9.65575 -9.07057 -8.36749 -7.79514 -6.38647 0.69541 0.83360 1.35414 1.36502 1.47665 2.33125 2.62888 2.92459 3.04967 3.34093 3.79547 3.91913 3.99421 4.05135 4.13771 4.22859 4.25391 4.37473 4.41417 4.47205 4.50709 4.56893 4.61954 4.65662 4.70393 4.73376 4.76630 4.82666 4.87175 4.89171 4.97483 4.99023 5.02386 5.05948 5.10215 5.12487 5.16992 5.20564 5.27290 5.28986 5.32602 5.41206 5.48130 5.58464 5.64460 5.67071 5.69292 5.92183 6.06142 6.18325 6.24606 6.37618 6.49395 6.81858 6.93195 7.33304 8.82080 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003366 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.616879 B = 8315.796714 C = 9473.375823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.054 3.946 7 N -0.530 5.530 8 C 0.110 3.890 9 C -0.157 4.157 10 C -0.065 4.065 11 C -0.215 4.215 12 C 0.214 3.786 13 N -0.632 5.632 14 C 0.098 3.902 15 C 0.267 3.733 16 C -0.541 4.541 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.927 5.927 20 Si 0.960 3.040 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.272 1.272 24 C -0.217 4.217 25 C -0.050 4.050 26 C 0.085 3.915 27 H 0.088 0.912 28 C -0.188 4.188 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.267 0.733 48 H 0.133 0.867 49 H 0.141 0.859 50 H 0.051 0.949 51 H 0.077 0.923 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.908 11.879 3.313 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.074 4.074 7 N -0.253 5.253 8 C -0.017 4.017 9 C -0.159 4.159 10 C -0.084 4.084 11 C -0.237 4.237 12 C 0.109 3.891 13 N -0.340 5.340 14 C -0.045 4.045 15 C 0.145 3.855 16 C -0.579 4.579 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.566 5.566 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.197 1.197 24 C -0.240 4.240 25 C -0.069 4.069 26 C -0.024 4.024 27 H 0.106 0.894 28 C -0.247 4.247 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.076 0.924 48 H 0.150 0.850 49 H 0.159 0.841 50 H 0.070 0.930 51 H 0.096 0.904 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.438 12.153 3.249 23.154 hybrid contribution 0.635 -1.580 -1.016 1.983 sum -18.803 10.573 2.233 21.687 Atomic orbital electron populations 1.21836 0.93678 1.02240 1.02306 1.21111 0.95995 0.99278 0.93421 0.91219 1.21652 0.94351 1.00755 0.98208 1.21563 0.96821 1.00826 0.96238 1.22072 0.99538 0.95028 0.90779 1.62289 1.07774 1.53595 1.01682 1.20914 0.89660 0.98681 0.92452 1.19467 0.95596 0.94222 1.06662 1.20749 0.93476 0.97089 0.97095 1.20717 0.93881 0.99513 1.09639 1.18196 0.83820 0.94161 0.92896 1.46966 1.02639 1.15863 1.68535 1.21601 0.92829 0.90604 0.99446 1.18762 0.93074 0.80855 0.92781 1.21770 1.44005 0.98831 0.93340 0.93339 1.25772 0.94742 0.94760 1.03357 1.70038 1.45208 1.03725 1.37678 0.85520 0.78743 0.77564 0.79663 1.19515 1.20358 1.19712 1.20811 0.96836 0.96170 1.10196 1.20868 0.91350 0.98372 0.96265 1.21753 0.86171 0.95306 0.99121 0.89386 1.22528 1.02580 0.98035 1.01528 0.91900 0.92117 0.92203 0.92033 0.91252 0.92172 0.92061 0.92357 0.95260 0.93971 0.89064 0.86771 0.88809 0.92896 0.92533 0.90368 0.97283 0.97185 0.92381 0.84968 0.84110 0.92970 0.90412 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.83 71.98 0.64 -1.10 16 2 C -0.08 -1.29 2.66 -10.74 -0.03 -1.32 16 3 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 4 C -0.11 -2.02 4.98 30.68 0.15 -1.87 16 5 C -0.12 -2.68 6.09 30.65 0.19 -2.49 16 6 C 0.05 1.40 4.28 86.33 0.37 1.77 16 7 N -0.53 -12.13 4.75 -875.65 -4.16 -16.28 16 8 C 0.11 2.55 5.30 85.56 0.45 3.00 16 9 C -0.16 -4.62 4.12 -19.84 -0.08 -4.70 16 10 C -0.06 -2.25 7.80 22.25 0.17 -2.07 16 11 C -0.21 -9.12 9.21 22.40 0.21 -8.92 16 12 C 0.21 8.87 6.55 38.22 0.25 9.12 16 13 N -0.63 -28.12 2.99 -726.55 -2.17 -30.29 16 14 C 0.10 3.46 10.19 127.77 1.30 4.76 16 15 C 0.27 14.22 4.91 85.64 0.42 14.64 16 16 C -0.54 -30.75 9.39 25.60 0.24 -30.51 16 17 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 18 C 0.01 0.73 5.46 84.65 0.46 1.19 16 19 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 20 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 C -0.22 -7.32 9.21 22.40 0.21 -7.11 16 25 C -0.05 -1.45 9.69 22.25 0.22 -1.23 16 26 C 0.08 1.52 2.47 44.93 0.11 1.63 16 27 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 28 C -0.19 -3.21 7.83 71.98 0.56 -2.65 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.70 6.41 -2.39 -0.02 0.68 16 32 H 0.06 1.10 6.56 -2.39 -0.02 1.09 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.89 5.65 -2.39 -0.01 1.88 16 37 H 0.03 0.77 6.19 -2.38 -0.01 0.76 16 38 H 0.04 0.96 6.01 -2.39 -0.01 0.94 16 39 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 40 H 0.11 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.09 4.61 6.14 -2.91 -0.02 4.59 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 43 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 44 H 0.08 2.35 6.20 -2.38 -0.01 2.34 16 45 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 46 H 0.01 0.59 6.20 -2.39 -0.01 0.57 16 47 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 48 H 0.13 3.87 6.14 -2.91 -0.02 3.85 16 49 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 50 H 0.05 0.93 6.36 -2.38 -0.02 0.92 16 51 H 0.08 1.07 6.41 -2.39 -0.02 1.05 16 52 H 0.05 1.02 4.80 -2.38 -0.01 1.01 16 Total: -1.00 -62.74 385.50 2.71 -60.03 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.89 Total: 22.43 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 5.84 Total: -27.85 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -6.05 Total: -101.13 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.74 2.71 -60.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092737300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.693 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds