Wall clock time and date at job start Tue Mar 31 2020 11:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45247 * 2 1 4 4 C 1.53038 * 109.46098 * 240.03281 * 2 1 3 5 5 H 1.09005 * 109.53696 * 300.76150 * 4 2 1 6 6 C 1.53002 * 109.50306 * 60.85875 * 4 2 1 7 7 C 1.53117 * 109.27947 * 180.79954 * 4 2 1 8 8 C 1.53120 * 109.16090 * 57.65263 * 7 4 2 9 9 C 1.53036 * 109.27790 * 302.35055 * 8 7 4 10 10 N 1.46840 * 109.46643 * 119.97854 * 2 1 3 11 11 C 1.46902 * 110.99888 * 305.85420 * 10 2 1 12 12 C 1.50699 * 109.47019 * 170.92462 * 11 10 2 13 13 C 1.38280 * 119.92714 * 94.86688 * 12 11 10 14 14 C 1.38106 * 120.07693 * 180.02562 * 13 12 11 15 15 C 1.38912 * 119.92019 * 0.02562 * 14 13 12 16 16 N 1.39685 * 120.07316 * 179.72430 * 15 14 13 17 17 C 1.46497 * 119.99796 * 359.97438 * 16 15 14 18 18 C 1.46495 * 119.99845 * 180.02562 * 16 15 14 19 19 C 1.50697 * 109.47509 * 90.00264 * 18 16 15 20 20 H 1.08000 * 119.99810 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00222 * 179.97438 * 19 18 16 22 22 N 1.31514 * 119.99890 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00192 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46787 * 89.99802 * 23 21 19 25 25 H 1.48497 * 109.47303 * 210.00053 * 23 21 19 26 26 H 1.48503 * 109.46804 * 330.00171 * 23 21 19 27 27 C 1.38908 * 119.85786 * 359.97438 * 15 14 13 28 28 C 1.38108 * 119.91899 * 0.02562 * 27 15 14 29 29 H 1.09004 * 109.46765 * 306.72145 * 1 2 3 30 30 H 1.08992 * 109.47762 * 66.72943 * 1 2 3 31 31 H 1.09009 * 109.46580 * 186.72894 * 1 2 3 32 32 H 1.09004 * 109.47033 * 179.80474 * 6 4 2 33 33 H 1.08995 * 109.47277 * 299.80164 * 6 4 2 34 34 H 1.08991 * 109.47518 * 59.80604 * 6 4 2 35 35 H 1.08997 * 109.52480 * 297.74756 * 7 4 2 36 36 H 1.09003 * 109.57307 * 177.58905 * 7 4 2 37 37 H 1.08998 * 109.50258 * 182.39905 * 8 7 4 38 38 H 1.09006 * 109.53368 * 62.30691 * 8 7 4 39 39 H 1.09000 * 109.45964 * 299.15714 * 9 8 7 40 40 H 1.09001 * 109.45921 * 179.19738 * 9 8 7 41 41 H 1.08994 * 109.47237 * 50.92286 * 11 10 2 42 42 H 1.09001 * 109.47087 * 290.92194 * 11 10 2 43 43 H 1.08001 * 119.96390 * 359.97438 * 13 12 11 44 44 H 1.07998 * 120.04464 * 179.97438 * 14 13 12 45 45 H 1.09008 * 109.47106 * 89.99895 * 17 16 15 46 46 H 1.08995 * 109.47667 * 210.00016 * 17 16 15 47 47 H 1.09002 * 109.47385 * 330.00254 * 17 16 15 48 48 H 1.09001 * 109.46728 * 209.99815 * 18 16 15 49 49 H 1.08996 * 109.47660 * 329.99393 * 18 16 15 50 50 H 0.97003 * 119.99994 * 179.97438 * 22 21 19 51 51 H 1.07999 * 120.04216 * 179.97438 * 27 15 14 52 52 H 1.08001 * 119.96391 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 1 1.6659 -1.7446 -1.2585 6 6 1.5479 0.0131 -2.4992 7 6 3.5709 -0.7358 -1.2358 8 6 4.0549 -1.4186 0.0464 9 6 3.4865 -0.6777 1.2589 10 7 2.0194 -0.6918 1.1992 11 6 1.4374 -0.1107 2.4165 12 6 1.7813 -0.9770 3.6007 13 6 2.8848 -0.6765 4.3780 14 6 3.2031 -1.4686 5.4636 15 6 2.4136 -2.5686 5.7739 16 7 2.7360 -3.3752 6.8678 17 6 3.9081 -3.0619 7.6888 18 6 1.9025 -4.5352 7.1933 19 6 2.4234 -5.7480 6.4663 20 1 3.2886 -5.6632 5.8254 21 6 1.7956 -6.9660 6.6192 22 7 0.7424 -7.0694 7.3999 23 14 2.4409 -8.4692 5.7173 24 1 3.4457 -9.1609 6.5642 25 1 1.3157 -9.3942 5.4287 26 1 3.0745 -8.0473 4.4422 27 6 1.3058 -2.8677 4.9911 28 6 0.9933 -2.0713 3.9069 29 1 -0.3633 0.6145 0.8238 30 1 -0.3634 0.4060 -0.9440 31 1 -0.3633 -1.0207 0.1204 32 1 1.9142 -0.4987 -3.3892 33 1 0.4580 0.0235 -2.5089 34 1 1.9209 1.0371 -2.4896 35 1 3.9456 0.2872 -1.2674 36 1 3.9388 -1.2854 -2.1023 37 1 5.1440 -1.3945 0.0827 38 1 3.7132 -2.4537 0.0595 39 1 3.8404 0.3533 1.2530 40 1 3.8177 -1.1699 2.1733 41 1 0.3542 -0.0541 2.3101 42 1 1.8402 0.8905 2.5696 43 1 3.4989 0.1782 4.1353 44 1 4.0653 -1.2336 6.0701 45 1 3.6160 -2.3941 8.4993 46 1 4.3163 -3.9825 8.1058 47 1 4.6642 -2.5758 7.0722 48 1 1.9336 -4.7147 8.2680 49 1 0.8746 -4.3416 6.8869 50 1 0.3004 -7.9262 7.5072 51 1 0.6902 -3.7224 5.2294 52 1 0.1319 -2.3029 3.2980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092737301.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:10 Heat of formation + Delta-G solvation = 21.816807 kcal Electronic energy + Delta-G solvation = -27024.475231 eV Core-core repulsion = 23602.053315 eV Total energy + Delta-G solvation = -3422.421916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83245 -38.69326 -35.98552 -34.14330 -33.13814 -32.65209 -30.41028 -30.09846 -28.09019 -27.78787 -26.35552 -25.83958 -24.40495 -22.64323 -21.75371 -21.32459 -21.03524 -19.63443 -19.47285 -16.62459 -16.42516 -15.82863 -15.56612 -15.23993 -14.80183 -14.59120 -14.42683 -14.20746 -14.00165 -13.69550 -13.22385 -13.18650 -12.97709 -12.85770 -12.68463 -12.41466 -12.13729 -12.12074 -11.94243 -11.70337 -11.61983 -11.51725 -11.35238 -11.23013 -10.98273 -10.90506 -10.69887 -10.68541 -10.64450 -10.26770 -10.17238 -10.14721 -9.86732 -9.70927 -8.79051 -8.49039 -8.23278 -8.13728 -6.43462 -5.99537 -4.15626 2.15024 2.25789 3.27594 3.34473 3.39582 3.95253 4.18205 4.43208 4.58867 4.63341 4.69323 4.79767 5.02470 5.22262 5.23270 5.24421 5.30037 5.35843 5.39103 5.41051 5.46052 5.58852 5.60576 5.62902 5.70417 5.71496 5.79684 5.84139 5.88407 5.90167 5.97024 6.00577 6.05553 6.11175 6.14535 6.17324 6.24541 6.30077 6.38991 6.43868 6.47950 6.67899 6.96789 7.05054 7.16086 7.25120 7.30185 7.32765 7.42883 7.64827 7.82914 8.17505 8.29426 8.51837 8.93548 9.51249 10.97289 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003190 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.939500 B = 8776.570524 C = 9573.132808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.088 3.912 3 H 0.034 0.966 4 C -0.085 4.085 5 H 0.079 0.921 6 C -0.148 4.148 7 C -0.115 4.115 8 C -0.118 4.118 9 C 0.056 3.944 10 N -0.527 5.527 11 C 0.107 3.893 12 C -0.166 4.166 13 C -0.069 4.069 14 C -0.222 4.222 15 C 0.241 3.759 16 N -0.616 5.616 17 C 0.099 3.901 18 C 0.249 3.751 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.188 4.188 28 C -0.050 4.050 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.028 0.972 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.131 0.869 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 15.921 -14.009 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 H 0.052 0.948 4 C -0.104 4.104 5 H 0.098 0.902 6 C -0.205 4.205 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.071 4.071 10 N -0.252 5.252 11 C -0.019 4.019 12 C -0.169 4.169 13 C -0.089 4.089 14 C -0.245 4.245 15 C 0.134 3.866 16 N -0.322 5.322 17 C -0.045 4.045 18 C 0.129 3.871 19 C -0.569 4.569 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.210 4.210 28 C -0.069 4.069 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.046 0.954 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.149 0.851 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.617 15.156 -13.763 20.639 hybrid contribution 0.714 -0.181 -0.316 0.801 sum 3.331 14.975 -14.079 20.822 Atomic orbital electron populations 1.22013 0.94626 1.02861 1.01451 1.21581 0.95210 0.94921 0.90353 0.94845 1.21179 0.95254 1.00447 0.93478 0.90249 1.21890 1.01266 1.00131 0.97257 1.21639 0.95325 1.00346 0.97922 1.21587 0.99466 1.00598 0.93926 1.22087 0.87428 0.98156 0.99476 1.61972 1.07045 1.54890 1.01250 1.20895 0.99591 0.93980 0.87450 1.19141 0.99164 0.99896 0.98650 1.20506 0.95835 0.98032 0.94489 1.20508 1.02869 0.98954 1.02211 1.17944 0.92410 0.89117 0.87123 1.47090 1.28628 1.28847 1.27660 1.21459 0.88355 1.00536 0.94174 1.19273 0.90313 0.81296 0.96168 1.21580 1.14032 0.93264 1.28045 0.92272 1.24957 0.94854 0.98936 0.95312 1.69931 1.20175 1.25528 1.37825 0.86529 0.78496 0.82442 0.80226 1.20658 1.21072 1.19754 1.20891 0.99528 1.02851 0.97775 1.20607 0.98076 0.93083 0.95147 0.92595 0.92089 0.91467 0.92703 0.92241 0.93033 0.92630 0.92088 0.91881 0.90959 0.95789 0.89712 0.90219 0.95354 0.87894 0.87049 0.94693 0.91500 0.92752 0.95272 0.94621 0.92666 0.85149 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.39 37.16 0.31 -1.14 16 2 C 0.09 0.93 1.96 -67.72 -0.13 0.79 16 3 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.08 -0.82 2.40 -90.54 -0.22 -1.04 16 5 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.15 -1.15 8.87 37.16 0.33 -0.82 16 7 C -0.11 -1.10 5.29 -26.61 -0.14 -1.24 16 8 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 9 C 0.06 0.70 5.20 -3.84 -0.02 0.68 16 10 N -0.53 -6.68 4.49 -228.13 -1.02 -7.70 16 11 C 0.11 1.40 4.80 -4.98 -0.02 1.37 16 12 C -0.17 -2.60 4.71 -104.59 -0.49 -3.09 16 13 C -0.07 -1.09 8.15 -39.61 -0.32 -1.41 16 14 C -0.22 -3.90 9.21 -39.38 -0.36 -4.26 16 15 C 0.24 4.93 6.55 -83.78 -0.55 4.38 16 16 N -0.62 -13.34 2.99 -181.00 -0.54 -13.88 16 17 C 0.10 1.76 10.19 59.85 0.61 2.37 16 18 C 0.25 6.30 4.91 -5.20 -0.03 6.28 16 19 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 20 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.90 -25.81 13.29 55.43 0.74 -25.08 16 23 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 27 C -0.19 -3.86 9.21 -39.38 -0.36 -4.22 16 28 C -0.05 -0.87 9.71 -39.61 -0.38 -1.26 16 29 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 30 H 0.06 0.49 6.13 -51.93 -0.32 0.17 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.43 6.32 -51.93 -0.33 0.11 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 1.21 6.02 -51.93 -0.31 0.89 16 41 H 0.08 0.98 5.82 -51.93 -0.30 0.68 16 42 H 0.03 0.35 8.04 -51.93 -0.42 -0.07 16 43 H 0.10 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.11 1.77 6.15 -52.49 -0.32 1.45 16 45 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 48 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 50 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 51 H 0.13 2.96 6.15 -52.49 -0.32 2.64 16 52 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -28.61 393.61 -11.47 -40.08 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -9.19 Total: 1.58 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.37 Total: -17.39 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.83 Total: -46.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.61 -11.47 -40.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092737301.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.895 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds