Wall clock time and date at job start Tue Mar 31 2020 11:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45247 * 2 1 4 4 C 1.53038 * 109.46098 * 240.03281 * 2 1 3 5 5 H 1.09005 * 109.53696 * 300.76150 * 4 2 1 6 6 C 1.53002 * 109.50306 * 60.85875 * 4 2 1 7 7 C 1.53117 * 109.27947 * 180.79954 * 4 2 1 8 8 C 1.53120 * 109.16090 * 57.65263 * 7 4 2 9 9 C 1.53036 * 109.27790 * 302.35055 * 8 7 4 10 10 N 1.46840 * 109.46643 * 119.97854 * 2 1 3 11 11 C 1.46902 * 110.99888 * 305.85420 * 10 2 1 12 12 C 1.50699 * 109.47019 * 170.92462 * 11 10 2 13 13 C 1.38280 * 119.92714 * 94.86688 * 12 11 10 14 14 C 1.38106 * 120.07693 * 180.02562 * 13 12 11 15 15 C 1.38912 * 119.92019 * 0.02562 * 14 13 12 16 16 N 1.39685 * 120.07316 * 179.72430 * 15 14 13 17 17 C 1.46497 * 119.99796 * 359.97438 * 16 15 14 18 18 C 1.46495 * 119.99845 * 180.02562 * 16 15 14 19 19 C 1.50697 * 109.47509 * 90.00264 * 18 16 15 20 20 H 1.08000 * 119.99810 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00222 * 179.97438 * 19 18 16 22 22 N 1.31514 * 119.99890 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00192 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46787 * 89.99802 * 23 21 19 25 25 H 1.48497 * 109.47303 * 210.00053 * 23 21 19 26 26 H 1.48503 * 109.46804 * 330.00171 * 23 21 19 27 27 C 1.38908 * 119.85786 * 359.97438 * 15 14 13 28 28 C 1.38108 * 119.91899 * 0.02562 * 27 15 14 29 29 H 1.09004 * 109.46765 * 306.72145 * 1 2 3 30 30 H 1.08992 * 109.47762 * 66.72943 * 1 2 3 31 31 H 1.09009 * 109.46580 * 186.72894 * 1 2 3 32 32 H 1.09004 * 109.47033 * 179.80474 * 6 4 2 33 33 H 1.08995 * 109.47277 * 299.80164 * 6 4 2 34 34 H 1.08991 * 109.47518 * 59.80604 * 6 4 2 35 35 H 1.08997 * 109.52480 * 297.74756 * 7 4 2 36 36 H 1.09003 * 109.57307 * 177.58905 * 7 4 2 37 37 H 1.08998 * 109.50258 * 182.39905 * 8 7 4 38 38 H 1.09006 * 109.53368 * 62.30691 * 8 7 4 39 39 H 1.09000 * 109.45964 * 299.15714 * 9 8 7 40 40 H 1.09001 * 109.45921 * 179.19738 * 9 8 7 41 41 H 1.08994 * 109.47237 * 50.92286 * 11 10 2 42 42 H 1.09001 * 109.47087 * 290.92194 * 11 10 2 43 43 H 1.08001 * 119.96390 * 359.97438 * 13 12 11 44 44 H 1.07998 * 120.04464 * 179.97438 * 14 13 12 45 45 H 1.09008 * 109.47106 * 89.99895 * 17 16 15 46 46 H 1.08995 * 109.47667 * 210.00016 * 17 16 15 47 47 H 1.09002 * 109.47385 * 330.00254 * 17 16 15 48 48 H 1.09001 * 109.46728 * 209.99815 * 18 16 15 49 49 H 1.08996 * 109.47660 * 329.99393 * 18 16 15 50 50 H 0.97003 * 119.99994 * 179.97438 * 22 21 19 51 51 H 1.07999 * 120.04216 * 179.97438 * 27 15 14 52 52 H 1.08001 * 119.96391 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 1 1.6659 -1.7446 -1.2585 6 6 1.5479 0.0131 -2.4992 7 6 3.5709 -0.7358 -1.2358 8 6 4.0549 -1.4186 0.0464 9 6 3.4865 -0.6777 1.2589 10 7 2.0194 -0.6918 1.1992 11 6 1.4374 -0.1107 2.4165 12 6 1.7813 -0.9770 3.6007 13 6 2.8848 -0.6765 4.3780 14 6 3.2031 -1.4686 5.4636 15 6 2.4136 -2.5686 5.7739 16 7 2.7360 -3.3752 6.8678 17 6 3.9081 -3.0619 7.6888 18 6 1.9025 -4.5352 7.1933 19 6 2.4234 -5.7480 6.4663 20 1 3.2886 -5.6632 5.8254 21 6 1.7956 -6.9660 6.6192 22 7 0.7424 -7.0694 7.3999 23 14 2.4409 -8.4692 5.7173 24 1 3.4457 -9.1609 6.5642 25 1 1.3157 -9.3942 5.4287 26 1 3.0745 -8.0473 4.4422 27 6 1.3058 -2.8677 4.9911 28 6 0.9933 -2.0713 3.9069 29 1 -0.3633 0.6145 0.8238 30 1 -0.3634 0.4060 -0.9440 31 1 -0.3633 -1.0207 0.1204 32 1 1.9142 -0.4987 -3.3892 33 1 0.4580 0.0235 -2.5089 34 1 1.9209 1.0371 -2.4896 35 1 3.9456 0.2872 -1.2674 36 1 3.9388 -1.2854 -2.1023 37 1 5.1440 -1.3945 0.0827 38 1 3.7132 -2.4537 0.0595 39 1 3.8404 0.3533 1.2530 40 1 3.8177 -1.1699 2.1733 41 1 0.3542 -0.0541 2.3101 42 1 1.8402 0.8905 2.5696 43 1 3.4989 0.1782 4.1353 44 1 4.0653 -1.2336 6.0701 45 1 3.6160 -2.3941 8.4993 46 1 4.3163 -3.9825 8.1058 47 1 4.6642 -2.5758 7.0722 48 1 1.9336 -4.7147 8.2680 49 1 0.8746 -4.3416 6.8869 50 1 0.3004 -7.9262 7.5072 51 1 0.6902 -3.7224 5.2294 52 1 0.1319 -2.3029 3.2980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092737301.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:09 Heat of formation + Delta-G solvation = 8.145447 kcal Electronic energy + Delta-G solvation = -27025.068066 eV Core-core repulsion = 23602.053315 eV Total energy + Delta-G solvation = -3423.014750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88876 -39.98067 -37.44145 -35.30564 -34.60361 -33.96658 -31.88219 -31.38068 -29.63669 -28.95667 -27.46486 -26.85374 -25.96929 -24.17277 -23.10512 -22.33815 -22.10313 -20.89972 -20.46050 -18.63756 -18.08006 -16.91230 -16.78541 -16.55896 -16.15263 -15.77855 -15.47500 -15.38340 -15.27985 -15.13638 -14.55824 -14.36183 -14.29531 -14.06466 -13.85532 -13.64657 -13.23297 -13.19185 -13.13219 -13.02201 -12.91219 -12.67782 -12.57688 -12.52078 -12.49290 -12.44665 -12.22510 -11.85283 -11.76065 -11.72042 -11.48936 -11.37919 -11.04747 -10.97014 -10.64300 -10.36153 -9.64487 -9.10069 -8.36059 -7.78918 -6.37631 0.71939 0.85122 1.35866 1.37462 1.48546 2.34100 2.63928 2.90761 3.05891 3.34160 3.84098 3.87932 3.96133 4.07832 4.10482 4.22913 4.27709 4.41839 4.44411 4.45957 4.47439 4.57846 4.65725 4.69344 4.70145 4.72754 4.75797 4.84897 4.86335 4.91337 4.97011 4.98241 5.03148 5.06248 5.09601 5.14449 5.16695 5.20618 5.23758 5.31159 5.34205 5.38244 5.51036 5.58432 5.60616 5.68114 5.70336 5.94536 6.07218 6.20175 6.30015 6.38594 6.50637 6.82912 6.94633 7.34262 8.83063 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003190 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.939500 B = 8776.570524 C = 9573.132808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.088 3.912 3 H 0.040 0.960 4 C -0.084 4.084 5 H 0.061 0.939 6 C -0.143 4.143 7 C -0.111 4.111 8 C -0.117 4.117 9 C 0.057 3.943 10 N -0.543 5.543 11 C 0.111 3.889 12 C -0.152 4.152 13 C -0.061 4.061 14 C -0.216 4.216 15 C 0.213 3.787 16 N -0.633 5.633 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.048 0.952 21 C 0.013 3.987 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.273 1.273 27 C -0.216 4.216 28 C -0.054 4.054 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.093 0.907 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.209 18.038 -16.201 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 H 0.058 0.942 4 C -0.103 4.103 5 H 0.079 0.921 6 C -0.200 4.200 7 C -0.148 4.148 8 C -0.155 4.155 9 C -0.070 4.070 10 N -0.268 5.268 11 C -0.015 4.015 12 C -0.154 4.154 13 C -0.081 4.081 14 C -0.239 4.239 15 C 0.108 3.892 16 N -0.341 5.341 17 C -0.044 4.044 18 C 0.145 3.855 19 C -0.580 4.580 20 H 0.066 0.934 21 C -0.186 4.186 22 N -0.566 5.566 23 Si 0.786 3.214 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.198 1.198 27 C -0.239 4.239 28 C -0.073 4.073 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.982 17.306 -15.969 23.882 hybrid contribution 0.273 -0.735 0.286 0.835 sum 4.255 16.570 -15.683 23.209 Atomic orbital electron populations 1.22002 0.93991 1.02138 1.02581 1.21650 0.95716 0.94999 0.89597 0.94182 1.21171 0.95398 0.99655 0.94107 0.92054 1.21846 1.01579 1.00282 0.96324 1.21618 0.95167 1.00773 0.97257 1.21575 1.00087 0.99403 0.94467 1.22052 0.87338 0.98656 0.99002 1.61929 1.07335 1.55765 1.01781 1.20866 1.00284 0.93862 0.86533 1.19473 0.98099 0.98792 0.99078 1.20871 0.95673 0.98296 0.93211 1.20757 1.02720 0.97713 1.02716 1.18194 0.93320 0.90383 0.87273 1.46959 1.29584 1.28435 1.29105 1.21592 0.87605 1.00604 0.94636 1.18756 0.89833 0.82468 0.94398 1.21770 1.13693 0.94495 1.28017 0.93397 1.25773 0.95004 1.01847 0.96022 1.70036 1.21209 1.26401 1.38992 0.85513 0.78180 0.78848 0.78904 1.19456 1.20321 1.19830 1.20768 1.00274 1.03012 0.99827 1.20728 0.98817 0.93458 0.94321 0.92304 0.90343 0.92919 0.92108 0.91768 0.92245 0.91633 0.91262 0.90842 0.93059 0.94574 0.91782 0.89492 0.93756 0.84545 0.84992 0.92931 0.92554 0.90394 0.97276 0.97180 0.92373 0.88854 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.39 71.98 0.60 -1.93 16 2 C 0.09 1.65 1.96 44.94 0.09 1.73 16 3 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.08 -1.46 2.40 -10.74 -0.03 -1.48 16 5 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 6 C -0.14 -1.82 8.87 71.98 0.64 -1.18 16 7 C -0.11 -1.85 5.29 30.67 0.16 -1.69 16 8 C -0.12 -2.42 6.09 30.65 0.19 -2.23 16 9 C 0.06 1.30 5.20 86.33 0.45 1.74 16 10 N -0.54 -12.68 4.49 -875.67 -3.93 -16.61 16 11 C 0.11 2.62 4.80 85.56 0.41 3.03 16 12 C -0.15 -4.53 4.71 -19.84 -0.09 -4.62 16 13 C -0.06 -1.78 8.15 22.25 0.18 -1.59 16 14 C -0.22 -7.27 9.21 22.40 0.21 -7.07 16 15 C 0.21 8.90 6.55 38.21 0.25 9.15 16 16 N -0.63 -28.34 2.99 -726.58 -2.17 -30.52 16 17 C 0.10 3.49 10.19 127.77 1.30 4.79 16 18 C 0.27 14.34 4.91 85.63 0.42 14.76 16 19 C -0.54 -31.04 9.39 25.60 0.24 -30.80 16 20 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 21 C 0.01 0.73 5.46 84.65 0.46 1.19 16 22 N -0.93 -55.19 13.29 21.45 0.28 -54.90 16 23 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 27 C -0.22 -9.35 9.21 22.40 0.21 -9.15 16 28 C -0.05 -1.93 9.71 22.25 0.22 -1.71 16 29 H 0.06 0.95 6.54 -2.38 -0.02 0.94 16 30 H 0.08 1.04 6.13 -2.39 -0.01 1.03 16 31 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.76 6.32 -2.39 -0.02 0.74 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 1.70 6.02 -2.39 -0.01 1.69 16 41 H 0.09 1.94 5.82 -2.39 -0.01 1.93 16 42 H 0.04 0.93 8.04 -2.39 -0.02 0.91 16 43 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 44 H 0.13 3.84 6.15 -2.91 -0.02 3.82 16 45 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 47 H 0.08 2.34 6.20 -2.39 -0.01 2.33 16 48 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 49 H 0.01 0.59 6.20 -2.39 -0.01 0.58 16 50 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 51 H 0.09 4.66 6.15 -2.91 -0.02 4.64 16 52 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -64.05 393.61 2.98 -61.07 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.87 Total: 21.10 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 5.90 Total: -27.06 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -5.82 Total: -102.04 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.05 2.98 -61.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092737301.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.214 kcal (2) G-P(sol) polarization free energy of solvation -64.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds