Wall clock time and date at job start Tue Mar 31 2020 11:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.57503 * 2 1 4 4 C 1.53125 * 109.51963 * 239.84740 * 2 1 3 5 5 C 1.53038 * 109.30916 * 182.46243 * 4 2 1 6 6 N 1.46843 * 109.52604 * 59.15458 * 5 4 2 7 7 C 1.46904 * 111.00015 * 174.15982 * 6 5 4 8 8 C 1.50698 * 109.46926 * 286.75493 * 7 6 5 9 9 C 1.38284 * 119.92648 * 269.72202 * 8 7 6 10 10 C 1.38109 * 120.07707 * 179.72655 * 9 8 7 11 11 C 1.38912 * 119.92154 * 0.55266 * 10 9 8 12 12 N 1.39671 * 120.07334 * 179.74918 * 11 10 9 13 13 C 1.46495 * 119.99927 * 179.97438 * 12 11 10 14 14 C 1.46499 * 119.99936 * 359.97113 * 12 11 10 15 15 C 1.50702 * 109.46986 * 90.00779 * 14 12 11 16 16 H 1.07999 * 119.99981 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00361 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99927 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00279 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46970 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46936 * 119.99693 * 19 17 15 22 22 H 1.48495 * 109.47142 * 239.99460 * 19 17 15 23 23 C 1.38915 * 119.85031 * 359.72510 * 11 10 9 24 24 C 1.38099 * 119.92629 * 359.97438 * 23 11 10 25 25 C 1.46846 * 111.20050 * 298.26028 * 6 5 4 26 26 H 1.08997 * 109.46029 * 301.72772 * 25 6 5 27 27 C 1.52998 * 109.46321 * 181.74612 * 25 6 5 28 28 C 1.53034 * 109.52136 * 61.74119 * 25 6 5 29 29 H 1.08997 * 109.47316 * 180.15786 * 1 2 3 30 30 H 1.09003 * 109.46590 * 300.15593 * 1 2 3 31 31 H 1.08995 * 109.47403 * 60.15209 * 1 2 3 32 32 H 1.09000 * 109.50485 * 62.49605 * 4 2 1 33 33 H 1.08999 * 109.49863 * 302.41722 * 4 2 1 34 34 H 1.09003 * 109.46292 * 179.17885 * 5 4 2 35 35 H 1.09004 * 109.45875 * 299.15250 * 5 4 2 36 36 H 1.09001 * 109.46795 * 46.75497 * 7 6 5 37 37 H 1.09002 * 109.47033 * 166.75398 * 7 6 5 38 38 H 1.08000 * 119.96184 * 359.97438 * 9 8 7 39 39 H 1.08000 * 120.03823 * 180.27626 * 10 9 8 40 40 H 1.09003 * 109.47498 * 89.99972 * 13 12 11 41 41 H 1.09005 * 109.47135 * 209.99543 * 13 12 11 42 42 H 1.08994 * 109.47131 * 329.99571 * 13 12 11 43 43 H 1.09006 * 109.47093 * 210.00392 * 14 12 11 44 44 H 1.09005 * 109.47328 * 330.00663 * 14 12 11 45 45 H 0.96995 * 119.99837 * 180.02562 * 18 17 15 46 46 H 1.08001 * 120.03369 * 180.02562 * 23 11 10 47 47 H 1.07995 * 119.96749 * 179.97438 * 24 23 11 48 48 H 1.09003 * 109.47242 * 67.47316 * 27 25 6 49 49 H 1.08996 * 109.47094 * 187.47846 * 27 25 6 50 50 H 1.09007 * 109.47332 * 307.47396 * 27 25 6 51 51 H 1.08996 * 109.50712 * 60.76345 * 28 25 6 52 52 H 1.09009 * 109.50177 * 180.84096 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7249 -1.2480 5 6 3.5708 -0.7760 -1.2123 6 7 4.0102 -1.4798 -0.0008 7 6 5.4670 -1.6695 -0.0013 8 6 5.8341 -2.7369 -0.9998 9 6 5.8993 -4.0599 -0.6027 10 6 6.2299 -5.0413 -1.5165 11 6 6.5083 -4.6968 -2.8331 12 7 6.8481 -5.6861 -3.7586 13 6 7.1409 -5.3210 -5.1467 14 6 6.9119 -7.0889 -3.3410 15 6 5.5616 -7.7310 -3.5297 16 1 4.7383 -7.1519 -3.9210 17 6 5.3770 -9.0574 -3.2017 18 7 6.3795 -9.7624 -2.7247 19 14 3.7031 -9.8530 -3.4349 20 1 2.7518 -8.8531 -3.9828 21 1 3.8236 -10.9911 -4.3812 22 1 3.2036 -10.3477 -2.1269 23 6 6.4475 -3.3661 -3.2272 24 6 6.1102 -2.3905 -2.3098 25 6 3.5717 -0.7756 1.2110 26 1 3.9689 0.2394 1.2049 27 6 4.0866 -1.5173 2.4461 28 6 2.0426 -0.7247 1.2477 29 1 -0.3634 -1.0276 0.0028 30 1 -0.3632 0.5163 0.8886 31 1 -0.3634 0.5114 -0.8913 32 1 1.7160 -0.1889 -2.1394 33 1 1.6441 -1.7396 -1.2679 34 1 3.9371 -1.3045 -2.0925 35 1 3.9680 0.2391 -1.2067 36 1 5.9551 -0.7338 -0.2737 37 1 5.7941 -1.9740 0.9929 38 1 5.6876 -4.3265 0.4222 39 1 6.2763 -6.0749 -1.2067 40 1 8.2060 -5.1140 -5.2512 41 1 6.8647 -6.1447 -5.8051 42 1 6.5699 -4.4328 -5.4170 43 1 7.6517 -7.6145 -3.9449 44 1 7.1962 -7.1426 -2.2901 45 1 6.2498 -10.6957 -2.4943 46 1 6.6630 -3.0949 -4.2502 47 1 6.0631 -1.3558 -2.6154 48 1 5.1729 -1.4388 2.4905 49 1 3.6533 -1.0743 3.3428 50 1 3.8004 -2.5674 2.3850 51 1 1.6450 -1.7393 1.2676 52 1 1.7177 -0.1889 2.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092762487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:50 Heat of formation + Delta-G solvation = 6.664142 kcal Electronic energy + Delta-G solvation = -26940.762955 eV Core-core repulsion = 23517.683970 eV Total energy + Delta-G solvation = -3423.078985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82380 -39.93105 -37.42869 -35.61777 -34.70973 -33.36675 -31.88371 -31.50359 -29.68706 -28.99776 -27.66445 -26.91813 -25.62648 -23.97144 -23.46633 -22.74737 -21.50748 -20.90351 -20.53319 -18.63921 -18.08913 -16.94186 -16.77549 -16.58097 -16.06937 -15.92530 -15.39188 -15.34797 -15.26304 -15.12669 -14.56005 -14.34678 -14.26392 -14.05338 -13.91164 -13.59967 -13.25168 -13.17970 -13.11320 -13.03125 -12.76473 -12.70184 -12.66260 -12.54491 -12.45342 -12.39413 -12.24371 -11.94344 -11.80180 -11.71167 -11.48822 -11.37411 -11.04685 -10.98635 -10.64675 -10.36001 -9.63600 -9.08863 -8.36058 -7.78182 -6.37600 0.72814 0.86700 1.35232 1.37017 1.49334 2.34164 2.64550 2.91777 3.05763 3.36775 3.83980 3.89565 3.93963 4.04742 4.10861 4.23141 4.28814 4.40995 4.43182 4.45532 4.49587 4.58893 4.64034 4.68174 4.72481 4.75330 4.80214 4.83030 4.87334 4.90224 4.93062 5.00339 5.01635 5.06552 5.08984 5.14146 5.19623 5.22261 5.27311 5.31474 5.34052 5.36721 5.42665 5.59492 5.61244 5.69060 5.70916 5.95851 6.07391 6.21035 6.31203 6.38948 6.51161 6.83397 6.95417 7.34354 8.83149 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003222 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.080765 B = 8687.066670 C = 9450.080721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.111 4.111 5 C 0.056 3.944 6 N -0.543 5.543 7 C 0.108 3.892 8 C -0.148 4.148 9 C -0.057 4.057 10 C -0.216 4.216 11 C 0.212 3.788 12 N -0.633 5.633 13 C 0.099 3.901 14 C 0.267 3.733 15 C -0.540 4.540 16 H 0.047 0.953 17 C 0.013 3.987 18 N -0.926 5.926 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.273 1.273 22 H -0.277 1.277 23 C -0.216 4.216 24 C -0.062 4.062 25 C 0.082 3.918 26 H 0.042 0.958 27 C -0.148 4.148 28 C -0.104 4.104 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.267 0.733 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.060 0.940 49 H 0.074 0.926 50 H 0.051 0.949 51 H 0.055 0.945 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 22.974 6.237 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.072 4.072 6 N -0.269 5.269 7 C -0.019 4.019 8 C -0.151 4.151 9 C -0.076 4.076 10 C -0.239 4.239 11 C 0.107 3.893 12 N -0.341 5.341 13 C -0.044 4.044 14 C 0.145 3.855 15 C -0.579 4.579 16 H 0.066 0.934 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.202 1.202 23 C -0.239 4.239 24 C -0.081 4.081 25 C -0.026 4.026 26 H 0.060 0.940 27 C -0.205 4.205 28 C -0.141 4.141 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.149 0.851 47 H 0.155 0.845 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.336 22.184 6.145 23.875 hybrid contribution -0.186 -0.658 -0.276 0.737 sum -6.521 21.526 5.869 23.246 Atomic orbital electron populations 1.21781 0.94511 1.01600 1.02150 1.21166 0.96084 0.99088 0.94527 0.90956 1.21635 0.94446 1.00456 0.98305 1.22099 0.95966 0.96039 0.93071 1.61908 1.12288 1.50383 1.02285 1.20901 0.87361 0.95293 0.98298 1.19488 1.06539 0.93876 0.95204 1.20744 0.96177 0.92254 0.98404 1.20768 1.10256 0.99328 0.93514 1.18191 0.92535 0.89181 0.89369 1.46950 1.72899 1.05646 1.08627 1.21588 1.00072 1.00972 0.81793 1.18761 0.95303 0.77002 0.94398 1.21804 0.97132 0.95844 1.43127 0.93425 1.25773 1.00664 0.97639 0.94579 1.70042 1.32801 1.09271 1.44516 0.85463 0.79550 0.78308 0.78101 1.19635 1.19807 1.20247 1.20759 1.11637 0.90535 1.00980 1.20866 0.96403 0.98689 0.92158 1.21642 0.95829 0.95316 0.89798 0.93962 1.21935 1.01109 1.00717 0.96739 1.21686 0.93744 1.00697 0.98016 0.93450 0.91840 0.92293 0.90854 0.93111 0.91484 0.94418 0.93554 0.89391 0.86270 0.88853 0.92928 0.92575 0.90428 0.97270 0.97163 0.92378 0.85053 0.84546 0.92148 0.90729 0.93006 0.92640 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.20 71.98 0.66 -1.39 16 2 C -0.09 -1.46 2.79 -10.71 -0.03 -1.49 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.11 -2.18 5.38 30.65 0.16 -2.01 16 5 C 0.06 1.20 5.25 86.33 0.45 1.65 16 6 N -0.54 -12.47 4.43 -875.65 -3.88 -16.35 16 7 C 0.11 2.52 4.95 85.56 0.42 2.94 16 8 C -0.15 -4.43 5.09 -19.84 -0.10 -4.53 16 9 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 10 C -0.22 -9.35 9.21 22.40 0.21 -9.15 16 11 C 0.21 8.89 6.55 38.22 0.25 9.14 16 12 N -0.63 -28.45 2.99 -726.55 -2.17 -30.63 16 13 C 0.10 3.51 10.19 127.77 1.30 4.81 16 14 C 0.27 14.36 4.91 85.63 0.42 14.78 16 15 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 16 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 19 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 C -0.22 -7.32 9.21 22.40 0.21 -7.11 16 24 C -0.06 -1.80 8.15 22.25 0.18 -1.62 16 25 C 0.08 1.51 2.44 44.94 0.11 1.62 16 26 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 27 C -0.15 -2.53 8.58 71.98 0.62 -1.91 16 28 C -0.10 -1.77 4.65 30.65 0.14 -1.63 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.64 5.94 -2.39 -0.01 1.62 16 35 H 0.04 0.71 8.14 -2.38 -0.02 0.70 16 36 H 0.05 0.96 7.98 -2.39 -0.02 0.94 16 37 H 0.09 1.93 5.44 -2.39 -0.01 1.92 16 38 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 39 H 0.09 4.66 6.14 -2.91 -0.02 4.64 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 42 H 0.08 2.35 6.20 -2.39 -0.01 2.34 16 43 H 0.01 0.52 8.07 -2.38 -0.02 0.50 16 44 H 0.01 0.60 6.20 -2.38 -0.01 0.59 16 45 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.13 3.85 6.14 -2.91 -0.02 3.83 16 47 H 0.14 3.09 7.80 -2.91 -0.02 3.07 16 48 H 0.06 0.99 6.41 -2.39 -0.02 0.97 16 49 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 50 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 51 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -64.32 397.05 3.05 -61.27 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.86 Total: 20.92 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 5.93 Total: -27.35 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -5.76 Total: -101.85 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.32 3.05 -61.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092762487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.933 kcal (2) G-P(sol) polarization free energy of solvation -64.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds