Wall clock time and date at job start Tue Mar 31 2020 11:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52839 * 1 3 3 H 1.11138 * 106.60735 * 2 1 4 4 C 1.52217 * 110.62744 * 115.97642 * 2 1 3 5 5 C 1.52768 * 110.72129 * 74.45578 * 4 2 1 6 6 H 1.08670 * 110.37453 * 299.47001 * 5 4 2 7 7 N 1.47287 * 109.07780 * 179.97438 * 5 4 2 8 8 C 1.46897 * 111.00281 * 187.67891 * 7 5 4 9 9 C 1.50703 * 109.47098 * 300.71293 * 8 7 5 10 10 H 1.08005 * 119.99892 * 4.68735 * 9 8 7 11 11 C 1.37871 * 120.00251 * 184.69068 * 9 8 7 12 12 N 1.31507 * 120.00316 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99928 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46996 * 90.00208 * 13 11 9 15 15 H 1.48500 * 109.47001 * 210.00415 * 13 11 9 16 16 H 1.48502 * 109.46994 * 330.00353 * 13 11 9 17 17 C 1.46893 * 110.99931 * 63.72227 * 7 5 4 18 18 C 1.50706 * 109.47068 * 190.00147 * 17 7 5 19 19 C 1.38668 * 120.41791 * 90.00464 * 18 17 7 20 20 C 1.38637 * 118.41778 * 179.97438 * 19 18 17 21 21 C 1.38221 * 119.16181 * 0.24780 * 20 19 18 22 22 N 1.31863 * 120.76101 * 359.50091 * 21 20 19 23 23 C 1.31876 * 121.72932 * 0.49469 * 22 21 20 24 24 C 1.52703 * 108.88744 * 60.97634 * 5 4 2 25 25 C 1.52469 * 110.81534 * 298.34983 * 24 5 4 26 26 C 1.54415 * 107.71450 * 171.51368 * 25 24 5 27 27 C 1.53113 * 110.03772 * 288.31440 * 25 24 5 28 28 C 1.51525 * 111.70263 * 242.96887 * 2 1 3 29 29 H 1.08996 * 109.47167 * 177.02971 * 1 2 3 30 30 H 1.09000 * 109.46711 * 297.03077 * 1 2 3 31 31 H 1.09005 * 109.46820 * 57.02968 * 1 2 3 32 32 H 1.09336 * 109.55149 * 313.96895 * 4 2 1 33 33 H 1.09314 * 109.57404 * 195.00534 * 4 2 1 34 34 H 1.09006 * 109.46971 * 60.70913 * 8 7 5 35 35 H 1.08998 * 109.47397 * 180.70852 * 8 7 5 36 36 H 0.97000 * 120.00595 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.47230 * 70.00140 * 17 7 5 38 38 H 1.09003 * 109.47686 * 309.99891 * 17 7 5 39 39 H 1.07995 * 120.79442 * 359.97438 * 19 18 17 40 40 H 1.08002 * 120.41392 * 179.97438 * 20 19 18 41 41 H 1.07996 * 119.61943 * 179.74263 * 21 20 19 42 42 H 1.08002 * 119.61983 * 179.75516 * 23 22 21 43 43 H 1.09304 * 109.29797 * 59.02636 * 24 5 4 44 44 H 1.09312 * 109.25742 * 177.72460 * 24 5 4 45 45 H 1.09004 * 109.47322 * 60.00248 * 26 25 24 46 46 H 1.08998 * 109.47422 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.47342 * 300.00230 * 26 25 24 48 48 H 1.08997 * 109.46893 * 59.99993 * 27 25 24 49 49 H 1.08997 * 109.47166 * 180.02562 * 27 25 24 50 50 H 1.09000 * 109.46754 * 300.00467 * 27 25 24 51 51 H 1.10243 * 108.73145 * 155.37792 * 28 2 1 52 52 H 1.10214 * 108.80363 * 40.31962 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8460 1.0650 0.0000 4 6 2.0646 -0.6240 1.2807 5 6 1.8967 -2.1422 1.2537 6 1 0.8458 -2.4051 1.1676 7 7 2.4265 -2.7074 2.5064 8 6 2.4539 -4.1751 2.4516 9 6 1.0583 -4.6954 2.2223 10 1 0.2458 -4.0046 2.0513 11 6 0.8186 -6.0530 2.2308 12 7 -0.3994 -6.5070 2.0312 13 14 2.2240 -7.2478 2.5259 14 1 2.3512 -7.5125 3.9815 15 1 1.9489 -8.5213 1.8133 16 1 3.4890 -6.6593 2.0173 17 6 1.6535 -2.2382 3.6640 18 6 2.3627 -2.6312 4.9343 19 6 3.2953 -1.7814 5.5096 20 6 3.9225 -2.1843 6.6785 21 6 3.6036 -3.4132 7.2248 22 7 2.7079 -4.1937 6.6526 23 6 2.0914 -3.8429 5.5408 24 6 2.6883 -2.7062 0.0761 25 6 2.1605 -2.1566 -1.2445 26 6 3.1350 -2.5953 -2.3591 27 6 0.7950 -2.7730 -1.5610 28 6 2.0887 -0.6398 -1.2540 29 1 -0.3633 -1.0262 -0.0532 30 1 -0.3633 0.4671 0.9154 31 1 -0.3633 0.5593 -0.8622 32 1 1.5241 -0.2177 2.1398 33 1 3.1247 -0.3809 1.3905 34 1 3.1002 -4.4961 1.6346 35 1 2.8375 -4.5668 3.3937 36 1 -0.5680 -7.4623 2.0368 37 1 0.6621 -2.6907 3.6465 38 1 1.5585 -1.1531 3.6219 39 1 3.5274 -0.8283 5.0579 40 1 4.6544 -1.5478 7.1536 41 1 4.0908 -3.7363 8.1329 42 1 1.3664 -4.5104 5.0991 43 1 3.7418 -2.4369 0.1868 44 1 2.6054 -3.7962 0.0750 45 1 3.1816 -3.6838 -2.3933 46 1 2.7839 -2.2160 -3.3188 47 1 4.1276 -2.1955 -2.1520 48 1 0.0925 -2.5279 -0.7646 49 1 0.4268 -2.3744 -2.5063 50 1 0.8942 -3.8557 -1.6376 51 1 3.1015 -0.2424 -1.4321 52 1 1.4810 -0.3222 -2.1169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092868648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:22 Heat of formation + Delta-G solvation = 17.344832 kcal Electronic energy + Delta-G solvation = -28629.904215 eV Core-core repulsion = 25207.288379 eV Total energy + Delta-G solvation = -3422.615835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97336 -39.35721 -36.43894 -33.80634 -32.66520 -32.18572 -31.35653 -29.44422 -27.79964 -27.23690 -26.33650 -25.66620 -24.68696 -23.11771 -22.50418 -21.36093 -20.11552 -19.26396 -17.78643 -16.78679 -16.49877 -15.97833 -15.59896 -14.97583 -14.43907 -14.28522 -14.18353 -13.94633 -13.83816 -13.72621 -13.11494 -12.94203 -12.89106 -12.76747 -12.64741 -12.34632 -12.19397 -11.84807 -11.67162 -11.60095 -11.43262 -11.19834 -11.04369 -10.82686 -10.74691 -10.65953 -10.49421 -10.33692 -10.18667 -9.98273 -9.94069 -9.63355 -9.52926 -9.38849 -9.22358 -8.96963 -8.60214 -8.50624 -7.19479 -6.12182 -4.11592 1.53768 1.70693 3.29053 3.36828 3.41049 4.19451 4.39405 4.74948 4.88420 4.89794 4.98607 5.14880 5.20043 5.22933 5.35798 5.38317 5.40263 5.43133 5.49207 5.53891 5.71060 5.76751 5.81851 5.89344 5.95270 5.97851 6.01032 6.02160 6.05714 6.09874 6.20945 6.25742 6.29227 6.29904 6.39108 6.44022 6.46162 6.48512 6.51829 6.54699 6.63393 6.73893 6.80994 6.85224 6.89271 7.01072 7.07309 7.16314 7.19020 7.55835 8.02181 8.08223 8.42465 8.43029 8.90464 9.51768 11.00079 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.005815 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.665942 B = 4814.328832 C = 6498.292222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 H 0.052 0.948 4 C -0.107 4.107 5 C 0.099 3.901 6 H 0.058 0.942 7 N -0.528 5.528 8 C 0.148 3.852 9 C -0.545 4.545 10 H 0.076 0.924 11 C 0.079 3.921 12 N -0.895 5.895 13 Si 0.864 3.136 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.094 3.906 18 C -0.107 4.107 19 C -0.066 4.066 20 C -0.184 4.184 21 C 0.081 3.919 22 N -0.491 5.491 23 C 0.117 3.883 24 C -0.097 4.097 25 C -0.054 4.054 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.093 4.093 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.165 0.835 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.057 0.943 51 H 0.051 0.949 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 12.799 -1.422 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.009 4.009 6 H 0.076 0.924 7 N -0.251 5.251 8 C 0.021 3.979 9 C -0.584 4.584 10 H 0.094 0.906 11 C -0.124 4.124 12 N -0.533 5.533 13 Si 0.691 3.309 14 H -0.198 1.198 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.034 4.034 18 C -0.109 4.109 19 C -0.093 4.093 20 C -0.204 4.204 21 C -0.076 4.076 22 N -0.199 5.199 23 C -0.040 4.040 24 C -0.134 4.134 25 C -0.054 4.054 26 C -0.201 4.201 27 C -0.196 4.196 28 C -0.131 4.131 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.163 0.837 42 H 0.182 0.818 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.069 0.931 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.184 11.998 -1.010 13.535 hybrid contribution 0.127 -0.325 -0.336 0.484 sum 6.311 11.673 -1.346 13.338 Atomic orbital electron populations 1.21968 0.95524 1.02571 1.00756 1.20732 0.95524 0.98614 0.94934 0.92942 1.21552 1.00886 0.96064 0.95982 1.21247 0.98269 0.92006 0.89388 0.92407 1.62642 1.50886 1.10708 1.00823 1.20292 0.96999 0.83723 0.96865 1.21579 0.93999 0.92713 1.50081 0.90609 1.24872 0.94973 0.98249 0.94298 1.69904 1.19814 1.14073 1.49475 0.87014 0.83645 0.81060 0.79157 1.19786 1.21377 1.19027 1.20906 0.95978 0.98925 0.87592 1.20897 0.97419 0.95297 0.97337 1.21414 0.94127 0.99499 0.94245 1.22006 1.02145 0.98464 0.97820 1.22643 0.94741 0.91038 0.99144 1.67738 1.07674 1.34182 1.10339 1.23069 0.96799 0.94220 0.89951 1.21498 0.98501 1.01643 0.91785 1.20340 0.95658 0.94027 0.95406 1.22262 0.98654 1.01292 0.97845 1.21982 0.96356 1.00851 1.00439 1.21238 1.00376 0.94682 0.96802 0.91638 0.93124 0.93379 0.92529 0.92062 0.95068 0.95763 0.92711 0.92140 0.91337 0.85410 0.85640 0.83685 0.81806 0.92700 0.90346 0.92670 0.93384 0.93217 0.91898 0.93870 0.92402 0.93058 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.91 37.07 0.33 -1.56 16 2 C -0.08 -0.99 2.60 -91.85 -0.24 -1.23 16 3 H 0.05 0.60 8.29 -50.70 -0.42 0.18 16 4 C -0.11 -1.52 4.52 -27.25 -0.12 -1.65 16 5 C 0.10 1.71 1.31 -67.77 -0.09 1.62 16 6 H 0.06 1.15 4.75 -52.11 -0.25 0.91 16 7 N -0.53 -10.01 4.55 -229.68 -1.05 -11.05 16 8 C 0.15 3.32 3.34 -4.98 -0.02 3.31 16 9 C -0.55 -13.87 7.97 -34.44 -0.27 -14.15 16 10 H 0.08 2.10 6.13 -52.48 -0.32 1.78 16 11 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 12 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 13 Si 0.86 21.19 27.38 -169.99 -4.65 16.53 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.27 -6.36 6.68 56.52 0.38 -5.98 16 17 C 0.09 1.68 4.83 -4.98 -0.02 1.65 16 18 C -0.11 -1.88 4.90 -104.48 -0.51 -2.39 16 19 C -0.07 -0.98 9.86 -39.28 -0.39 -1.37 16 20 C -0.18 -2.51 10.11 -39.44 -0.40 -2.90 16 21 C 0.08 1.24 11.18 -17.54 -0.20 1.04 16 22 N -0.49 -9.26 10.36 -13.25 -0.14 -9.40 16 23 C 0.12 2.28 9.08 -17.55 -0.16 2.12 16 24 C -0.10 -1.64 3.38 -27.16 -0.09 -1.73 16 25 C -0.05 -0.77 0.71 -154.56 -0.11 -0.88 16 26 C -0.14 -1.85 8.08 37.90 0.31 -1.54 16 27 C -0.14 -2.14 8.00 37.22 0.30 -1.84 16 28 C -0.09 -1.17 4.12 -28.06 -0.12 -1.29 16 29 H 0.06 0.93 4.92 -51.93 -0.26 0.67 16 30 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.79 6.13 -51.74 -0.32 0.47 16 33 H 0.06 0.87 8.17 -51.75 -0.42 0.45 16 34 H 0.03 0.74 5.58 -51.93 -0.29 0.45 16 35 H 0.02 0.58 5.02 -51.93 -0.26 0.32 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.06 1.22 6.66 -51.93 -0.35 0.88 16 38 H 0.07 1.06 5.88 -51.93 -0.31 0.76 16 39 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.16 3.56 7.97 -52.49 -0.42 3.14 16 43 H 0.05 0.92 8.11 -51.76 -0.42 0.50 16 44 H 0.08 1.57 6.08 -51.75 -0.31 1.25 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 48 H 0.06 1.04 4.62 -51.93 -0.24 0.80 16 49 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 51 H 0.05 0.61 7.94 -51.22 -0.41 0.20 16 52 H 0.05 0.62 7.94 -51.24 -0.41 0.21 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -28.22 379.01 -10.02 -38.24 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.77 Total: 5.94 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -1.90 Total: -20.73 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.41 Total: -45.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.65 Total: 16.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.22 -10.02 -38.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092868648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.583 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds