Wall clock time and date at job start Tue Mar 31 2020 11:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52839 * 1 3 3 H 1.11138 * 106.60735 * 2 1 4 4 C 1.52217 * 110.62744 * 115.97642 * 2 1 3 5 5 C 1.52768 * 110.72129 * 74.45578 * 4 2 1 6 6 H 1.08670 * 110.37453 * 299.47001 * 5 4 2 7 7 N 1.47287 * 109.07780 * 179.97438 * 5 4 2 8 8 C 1.46897 * 111.00281 * 187.67891 * 7 5 4 9 9 C 1.50703 * 109.47098 * 300.71293 * 8 7 5 10 10 H 1.08005 * 119.99892 * 4.68735 * 9 8 7 11 11 C 1.37871 * 120.00251 * 184.69068 * 9 8 7 12 12 N 1.31507 * 120.00316 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99928 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46996 * 90.00208 * 13 11 9 15 15 H 1.48500 * 109.47001 * 210.00415 * 13 11 9 16 16 H 1.48502 * 109.46994 * 330.00353 * 13 11 9 17 17 C 1.46893 * 110.99931 * 63.72227 * 7 5 4 18 18 C 1.50706 * 109.47068 * 190.00147 * 17 7 5 19 19 C 1.38668 * 120.41791 * 90.00464 * 18 17 7 20 20 C 1.38637 * 118.41778 * 179.97438 * 19 18 17 21 21 C 1.38221 * 119.16181 * 0.24780 * 20 19 18 22 22 N 1.31863 * 120.76101 * 359.50091 * 21 20 19 23 23 C 1.31876 * 121.72932 * 0.49469 * 22 21 20 24 24 C 1.52703 * 108.88744 * 60.97634 * 5 4 2 25 25 C 1.52469 * 110.81534 * 298.34983 * 24 5 4 26 26 C 1.54415 * 107.71450 * 171.51368 * 25 24 5 27 27 C 1.53113 * 110.03772 * 288.31440 * 25 24 5 28 28 C 1.51525 * 111.70263 * 242.96887 * 2 1 3 29 29 H 1.08996 * 109.47167 * 177.02971 * 1 2 3 30 30 H 1.09000 * 109.46711 * 297.03077 * 1 2 3 31 31 H 1.09005 * 109.46820 * 57.02968 * 1 2 3 32 32 H 1.09336 * 109.55149 * 313.96895 * 4 2 1 33 33 H 1.09314 * 109.57404 * 195.00534 * 4 2 1 34 34 H 1.09006 * 109.46971 * 60.70913 * 8 7 5 35 35 H 1.08998 * 109.47397 * 180.70852 * 8 7 5 36 36 H 0.97000 * 120.00595 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.47230 * 70.00140 * 17 7 5 38 38 H 1.09003 * 109.47686 * 309.99891 * 17 7 5 39 39 H 1.07995 * 120.79442 * 359.97438 * 19 18 17 40 40 H 1.08002 * 120.41392 * 179.97438 * 20 19 18 41 41 H 1.07996 * 119.61943 * 179.74263 * 21 20 19 42 42 H 1.08002 * 119.61983 * 179.75516 * 23 22 21 43 43 H 1.09304 * 109.29797 * 59.02636 * 24 5 4 44 44 H 1.09312 * 109.25742 * 177.72460 * 24 5 4 45 45 H 1.09004 * 109.47322 * 60.00248 * 26 25 24 46 46 H 1.08998 * 109.47422 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.47342 * 300.00230 * 26 25 24 48 48 H 1.08997 * 109.46893 * 59.99993 * 27 25 24 49 49 H 1.08997 * 109.47166 * 180.02562 * 27 25 24 50 50 H 1.09000 * 109.46754 * 300.00467 * 27 25 24 51 51 H 1.10243 * 108.73145 * 155.37792 * 28 2 1 52 52 H 1.10214 * 108.80363 * 40.31962 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8460 1.0650 0.0000 4 6 2.0646 -0.6240 1.2807 5 6 1.8967 -2.1422 1.2537 6 1 0.8458 -2.4051 1.1676 7 7 2.4265 -2.7074 2.5064 8 6 2.4539 -4.1751 2.4516 9 6 1.0583 -4.6954 2.2223 10 1 0.2458 -4.0046 2.0513 11 6 0.8186 -6.0530 2.2308 12 7 -0.3994 -6.5070 2.0312 13 14 2.2240 -7.2478 2.5259 14 1 2.3512 -7.5125 3.9815 15 1 1.9489 -8.5213 1.8133 16 1 3.4890 -6.6593 2.0173 17 6 1.6535 -2.2382 3.6640 18 6 2.3627 -2.6312 4.9343 19 6 3.2953 -1.7814 5.5096 20 6 3.9225 -2.1843 6.6785 21 6 3.6036 -3.4132 7.2248 22 7 2.7079 -4.1937 6.6526 23 6 2.0914 -3.8429 5.5408 24 6 2.6883 -2.7062 0.0761 25 6 2.1605 -2.1566 -1.2445 26 6 3.1350 -2.5953 -2.3591 27 6 0.7950 -2.7730 -1.5610 28 6 2.0887 -0.6398 -1.2540 29 1 -0.3633 -1.0262 -0.0532 30 1 -0.3633 0.4671 0.9154 31 1 -0.3633 0.5593 -0.8622 32 1 1.5241 -0.2177 2.1398 33 1 3.1247 -0.3809 1.3905 34 1 3.1002 -4.4961 1.6346 35 1 2.8375 -4.5668 3.3937 36 1 -0.5680 -7.4623 2.0368 37 1 0.6621 -2.6907 3.6465 38 1 1.5585 -1.1531 3.6219 39 1 3.5274 -0.8283 5.0579 40 1 4.6544 -1.5478 7.1536 41 1 4.0908 -3.7363 8.1329 42 1 1.3664 -4.5104 5.0991 43 1 3.7418 -2.4369 0.1868 44 1 2.6054 -3.7962 0.0750 45 1 3.1816 -3.6838 -2.3933 46 1 2.7839 -2.2160 -3.3188 47 1 4.1276 -2.1955 -2.1520 48 1 0.0925 -2.5279 -0.7646 49 1 0.4268 -2.3744 -2.5063 50 1 0.8942 -3.8557 -1.6376 51 1 3.1015 -0.2424 -1.4321 52 1 1.4810 -0.3222 -2.1169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092868648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:21 Heat of formation + Delta-G solvation = 1.385029 kcal Electronic energy + Delta-G solvation = -28630.596284 eV Core-core repulsion = 25207.288379 eV Total energy + Delta-G solvation = -3423.307904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30290 -40.59799 -37.90178 -35.02204 -34.50834 -33.66300 -32.60355 -30.98562 -29.41327 -28.40155 -27.36518 -27.07244 -26.14537 -24.47572 -24.10214 -22.65328 -21.38378 -20.78607 -19.33311 -18.39542 -17.83499 -17.32256 -16.95598 -16.55756 -15.98238 -15.82523 -15.51797 -15.14802 -15.05980 -14.99989 -14.54516 -14.41365 -14.29442 -14.05732 -13.94690 -13.83026 -13.46727 -13.28526 -13.05506 -12.99506 -12.82594 -12.65161 -12.52397 -12.31990 -12.13147 -11.98060 -11.86388 -11.79790 -11.63962 -11.61613 -11.39431 -11.09083 -10.86310 -10.77848 -10.62283 -10.47672 -10.27510 -9.83498 -8.88966 -8.30488 -6.30419 0.26565 0.46988 1.26259 1.30555 1.37312 2.29408 2.88220 3.06430 3.38008 3.64593 3.80331 3.83573 3.98269 4.02497 4.08166 4.21709 4.23704 4.28728 4.32626 4.36225 4.48920 4.55762 4.61310 4.70083 4.74425 4.77482 4.85801 4.91918 4.93318 4.96627 4.99793 5.02925 5.04357 5.08942 5.13042 5.16747 5.18157 5.23743 5.27400 5.28737 5.31755 5.35646 5.46018 5.50825 5.56248 5.56844 5.62984 5.71325 5.78172 5.91658 6.16050 6.38502 6.50296 6.75756 7.13460 7.35097 8.85299 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.005815 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.665942 B = 4814.328832 C = 6498.292222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.098 4.098 5 C 0.100 3.900 6 H 0.021 0.979 7 N -0.519 5.519 8 C 0.163 3.837 9 C -0.520 4.520 10 H 0.042 0.958 11 C 0.026 3.974 12 N -0.940 5.940 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.253 1.253 17 C 0.102 3.898 18 C -0.121 4.121 19 C -0.061 4.061 20 C -0.164 4.164 21 C 0.075 3.925 22 N -0.524 5.524 23 C 0.088 3.912 24 C -0.091 4.091 25 C -0.052 4.052 26 C -0.139 4.139 27 C -0.135 4.135 28 C -0.092 4.092 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.016 0.984 36 H 0.262 0.738 37 H 0.021 0.979 38 H 0.099 0.901 39 H 0.161 0.839 40 H 0.174 0.826 41 H 0.180 0.820 42 H 0.121 0.879 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.066 0.934 50 H 0.028 0.972 51 H 0.070 0.930 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 16.449 -1.273 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.136 4.136 5 C -0.008 4.008 6 H 0.039 0.961 7 N -0.241 5.241 8 C 0.035 3.965 9 C -0.559 4.559 10 H 0.060 0.940 11 C -0.172 4.172 12 N -0.581 5.581 13 Si 0.744 3.256 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.177 1.177 17 C -0.026 4.026 18 C -0.123 4.123 19 C -0.087 4.087 20 C -0.183 4.183 21 C -0.082 4.082 22 N -0.233 5.233 23 C -0.069 4.069 24 C -0.129 4.129 25 C -0.052 4.052 26 C -0.197 4.197 27 C -0.193 4.193 28 C -0.130 4.130 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.117 0.883 39 H 0.178 0.822 40 H 0.191 0.809 41 H 0.197 0.803 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.047 0.953 51 H 0.088 0.912 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.455 15.661 -0.873 18.315 hybrid contribution -0.912 -1.380 -0.292 1.680 sum 8.543 14.281 -1.165 16.682 Atomic orbital electron populations 1.21963 0.95894 1.01138 1.01767 1.20755 0.95173 0.99972 0.93894 0.89994 1.21498 1.01781 0.92835 0.97492 1.21287 0.96061 0.94701 0.88713 0.96053 1.62684 1.51144 1.08151 1.02164 1.19999 0.94372 0.86336 0.95789 1.21693 0.94811 0.91910 1.47502 0.93959 1.25556 0.96824 1.00060 0.94800 1.70029 1.21747 1.14248 1.52091 0.86137 0.81583 0.79278 0.78598 1.20228 1.21012 1.17735 1.20864 0.93954 1.00181 0.87634 1.20829 0.98864 0.95376 0.97244 1.21779 0.92582 0.99908 0.94418 1.22485 1.01431 0.97842 0.96571 1.23310 0.93559 0.91461 0.99873 1.67637 1.09195 1.35999 1.10474 1.22549 0.97805 0.95005 0.91494 1.21436 0.98986 0.99103 0.93389 1.20328 0.94843 0.95759 0.94282 1.22223 0.98939 1.00418 0.98095 1.21946 0.97189 0.99196 1.00924 1.21213 1.01880 0.92492 0.97382 0.94398 0.92836 0.91590 0.92057 0.90908 0.95778 0.96569 0.92863 0.96079 0.88309 0.82176 0.80867 0.80341 0.86122 0.91925 0.94537 0.94277 0.91447 0.91895 0.93911 0.91535 0.95315 0.91176 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.91 71.93 0.64 -2.90 16 2 C -0.08 -1.75 2.60 -11.59 -0.03 -1.78 16 3 H 0.08 1.45 8.29 -1.23 -0.01 1.44 16 4 C -0.10 -2.59 4.52 30.26 0.14 -2.45 16 5 C 0.10 3.53 1.31 44.67 0.06 3.59 16 6 H 0.02 0.92 4.75 -2.56 -0.01 0.91 16 7 N -0.52 -20.09 4.55 -880.59 -4.01 -24.09 16 8 C 0.16 7.67 3.34 85.56 0.29 7.95 16 9 C -0.52 -28.59 7.97 25.60 0.20 -28.38 16 10 H 0.04 2.58 6.13 -2.91 -0.02 2.56 16 11 C 0.03 1.51 5.47 84.65 0.46 1.97 16 12 N -0.94 -58.45 13.96 21.44 0.30 -58.15 16 13 Si 0.92 45.95 27.38 68.60 1.88 47.83 16 14 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 15 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.25 -12.06 6.68 99.48 0.66 -11.39 16 17 C 0.10 3.71 4.83 85.56 0.41 4.12 16 18 C -0.12 -4.22 4.90 -19.77 -0.10 -4.32 16 19 C -0.06 -1.59 9.86 22.47 0.22 -1.37 16 20 C -0.16 -3.72 10.11 22.36 0.23 -3.50 16 21 C 0.08 2.09 11.18 84.68 0.95 3.03 16 22 N -0.52 -19.90 10.36 -195.84 -2.03 -21.93 16 23 C 0.09 3.59 9.08 84.67 0.77 4.36 16 24 C -0.09 -3.14 3.38 30.32 0.10 -3.03 16 25 C -0.05 -1.43 0.71 -52.22 -0.04 -1.47 16 26 C -0.14 -3.37 8.08 72.46 0.59 -2.79 16 27 C -0.14 -4.31 8.00 72.02 0.58 -3.73 16 28 C -0.09 -2.02 4.12 29.73 0.12 -1.90 16 29 H 0.04 1.10 4.92 -2.39 -0.01 1.09 16 30 H 0.05 1.20 8.08 -2.39 -0.02 1.18 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.06 1.55 6.13 -2.21 -0.01 1.54 16 33 H 0.07 1.79 8.17 -2.22 -0.02 1.78 16 34 H 0.02 1.18 5.58 -2.38 -0.01 1.17 16 35 H 0.02 0.80 5.02 -2.39 -0.01 0.79 16 36 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.02 0.93 6.66 -2.39 -0.02 0.91 16 38 H 0.10 2.95 5.88 -2.39 -0.01 2.94 16 39 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 42 H 0.12 5.84 7.97 -2.91 -0.02 5.82 16 43 H 0.06 2.03 8.11 -2.23 -0.02 2.01 16 44 H 0.04 1.53 6.08 -2.22 -0.01 1.52 16 45 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 48 H 0.04 1.52 4.62 -2.39 -0.01 1.51 16 49 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 50 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.07 1.33 7.94 -1.72 -0.01 1.32 16 52 H 0.07 1.34 7.94 -1.74 -0.01 1.32 16 Total: -1.00 -68.06 379.01 2.60 -65.46 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.87 Total: 23.47 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 5.59 Total: -32.59 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -5.74 Total: -104.18 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.83 kcal Total: -68.06 2.60 -65.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092868648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.848 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds