Wall clock time and date at job start Tue Mar 31 2020 11:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52845 * 1 3 3 H 1.11130 * 106.60633 * 2 1 4 4 C 1.52204 * 110.61854 * 244.04399 * 2 1 3 5 5 C 1.52770 * 110.74816 * 285.48776 * 4 2 1 6 6 H 1.08674 * 110.35452 * 60.56004 * 5 4 2 7 7 N 1.47267 * 109.09568 * 180.02562 * 5 4 2 8 8 C 1.46900 * 110.99752 * 178.04066 * 7 5 4 9 9 C 1.50705 * 109.47448 * 59.33162 * 8 7 5 10 10 H 1.08006 * 119.99350 * 355.26856 * 9 8 7 11 11 C 1.37872 * 120.00411 * 175.26645 * 9 8 7 12 12 N 1.31521 * 119.99621 * 359.72597 * 11 9 8 13 13 Si 1.86797 * 120.00370 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47058 * 89.99842 * 13 11 9 15 15 H 1.48495 * 109.47297 * 210.00591 * 13 11 9 16 16 H 1.48503 * 109.46654 * 330.00140 * 13 11 9 17 17 C 1.46906 * 110.99908 * 301.98916 * 7 5 4 18 18 C 1.50699 * 109.46940 * 170.00396 * 17 7 5 19 19 C 1.38673 * 120.41856 * 90.00309 * 18 17 7 20 20 C 1.38633 * 118.41777 * 180.02562 * 19 18 17 21 21 C 1.38230 * 119.16281 * 0.02562 * 20 19 18 22 22 N 1.31850 * 120.76395 * 359.97438 * 21 20 19 23 23 C 1.31886 * 121.72613 * 359.70454 * 22 21 20 24 24 C 1.52697 * 108.89619 * 299.08339 * 5 4 2 25 25 C 1.52469 * 110.81884 * 61.62052 * 24 5 4 26 26 C 1.54420 * 107.70780 * 188.46517 * 25 24 5 27 27 C 1.53112 * 110.03172 * 71.67493 * 25 24 5 28 28 C 1.51520 * 111.72211 * 117.03397 * 2 1 3 29 29 H 1.09004 * 109.46924 * 175.95629 * 1 2 3 30 30 H 1.08993 * 109.47047 * 295.95546 * 1 2 3 31 31 H 1.08997 * 109.46994 * 55.95583 * 1 2 3 32 32 H 1.09317 * 109.58952 * 164.94134 * 4 2 1 33 33 H 1.09336 * 109.56565 * 45.98094 * 4 2 1 34 34 H 1.09003 * 109.47113 * 299.33430 * 8 7 5 35 35 H 1.08995 * 109.47156 * 179.33300 * 8 7 5 36 36 H 0.97003 * 119.99570 * 179.97438 * 12 11 9 37 37 H 1.08992 * 109.47189 * 290.00435 * 17 7 5 38 38 H 1.08994 * 109.46925 * 50.00770 * 17 7 5 39 39 H 1.07992 * 120.78919 * 0.02562 * 19 18 17 40 40 H 1.08003 * 120.41266 * 180.02562 * 20 19 18 41 41 H 1.07997 * 119.61319 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.62219 * 180.30978 * 23 22 21 43 43 H 1.09306 * 109.26730 * 182.26604 * 24 5 4 44 44 H 1.09295 * 109.27802 * 300.94874 * 24 5 4 45 45 H 1.09006 * 109.46965 * 181.67436 * 26 25 24 46 46 H 1.08998 * 109.47153 * 301.67161 * 26 25 24 47 47 H 1.08999 * 109.47307 * 61.67802 * 26 25 24 48 48 H 1.08996 * 109.47088 * 294.86151 * 27 25 24 49 49 H 1.09007 * 109.46851 * 54.85527 * 27 25 24 50 50 H 1.08999 * 109.47525 * 174.85628 * 27 25 24 51 51 H 1.10249 * 108.74564 * 204.61629 * 28 2 1 52 52 H 1.10211 * 108.80136 * 319.69967 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8461 1.0650 0.0000 4 6 2.0644 -0.6235 -1.2809 5 6 1.8980 -2.1419 -1.2545 6 1 0.8472 -2.4055 -1.1685 7 7 2.4275 -2.7064 -2.5074 8 6 2.3304 -4.1722 -2.5067 9 6 0.8882 -4.5801 -2.3488 10 1 0.1300 -3.8293 -2.1814 11 6 0.5367 -5.9115 -2.4179 12 7 1.4594 -6.8251 -2.6271 13 14 -1.2509 -6.4170 -2.2229 14 1 -1.9096 -6.4302 -3.5537 15 1 -1.3191 -7.7737 -1.6232 16 1 -1.9452 -5.4486 -1.3366 17 6 1.7421 -2.1340 -3.6738 18 6 2.4652 -2.5418 -4.9315 19 6 2.1171 -3.7090 -5.5945 20 6 2.8101 -4.0446 -6.7473 21 6 3.8181 -3.2110 -7.1942 22 7 4.1222 -2.1086 -6.5379 23 6 3.4802 -1.7548 -5.4415 24 6 2.6894 -2.7058 -0.0767 25 6 2.1609 -2.1567 1.2439 26 6 3.1351 -2.5957 2.3586 27 6 0.7955 -2.7736 1.5595 28 6 2.0892 -0.6398 1.2538 29 1 -0.3633 -1.0252 -0.0725 30 1 -0.3633 0.4498 0.9240 31 1 -0.3633 0.5753 -0.8515 32 1 3.1243 -0.3798 -1.3915 33 1 1.5233 -0.2177 -2.1399 34 1 2.9145 -4.5746 -1.6790 35 1 2.7173 -4.5624 -3.4479 36 1 1.2122 -7.7618 -2.6754 37 1 0.7165 -2.5013 -3.7090 38 1 1.7361 -1.0469 -3.5944 39 1 1.3251 -4.3413 -5.2216 40 1 2.5653 -4.9461 -7.2894 41 1 4.3629 -3.4657 -8.0912 42 1 3.7540 -0.8418 -4.9336 43 1 2.6074 -3.7957 -0.0758 44 1 3.7427 -2.4357 -0.1873 45 1 2.7676 -2.2424 3.3222 46 1 3.2046 -3.6833 2.3729 47 1 4.1207 -2.1710 2.1679 48 1 0.0705 -2.4535 0.8113 49 1 0.8761 -3.8606 1.5457 50 1 0.4681 -2.4461 2.5462 51 1 3.1021 -0.2424 1.4318 52 1 1.4815 -0.3225 2.1167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092868649.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:25 Heat of formation + Delta-G solvation = 13.251993 kcal Electronic energy + Delta-G solvation = -28567.731860 eV Core-core repulsion = 25144.938546 eV Total energy + Delta-G solvation = -3422.793314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88241 -39.29793 -36.36485 -33.80078 -32.61684 -32.18559 -31.21664 -29.27719 -27.43220 -27.21029 -26.33367 -25.59288 -24.63226 -23.04902 -22.67575 -21.29553 -20.19206 -19.32372 -17.69576 -16.61241 -16.22763 -15.88421 -15.48818 -14.89387 -14.64837 -14.23699 -14.16637 -13.92980 -13.77418 -13.57843 -13.06918 -12.91521 -12.84692 -12.73556 -12.45207 -12.37352 -12.12861 -11.82929 -11.61897 -11.50181 -11.42221 -11.12803 -11.01187 -10.84553 -10.74112 -10.58791 -10.47389 -10.35591 -10.17555 -10.08512 -9.88082 -9.64574 -9.58754 -9.27898 -9.09036 -8.94680 -8.45883 -8.42963 -7.15398 -6.06603 -4.15716 1.63240 1.86606 3.20829 3.29702 3.31599 4.28960 4.34995 4.81672 4.89225 4.90767 4.99794 5.22663 5.25246 5.32985 5.36628 5.43347 5.48794 5.54378 5.57029 5.68027 5.75429 5.76874 5.85116 5.89046 5.96859 5.97435 6.00003 6.05650 6.09815 6.18339 6.20734 6.24505 6.28423 6.32728 6.38784 6.45873 6.48425 6.54012 6.54667 6.66497 6.74208 6.75901 6.81629 6.99114 7.02891 7.08653 7.22327 7.30190 7.53502 7.88381 8.04772 8.24208 8.30091 8.43874 8.95324 9.50673 10.97264 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.005869 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.094233 B = 4769.897005 C = 6592.885796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.053 0.947 4 C -0.111 4.111 5 C 0.098 3.902 6 H 0.054 0.946 7 N -0.535 5.535 8 C 0.182 3.818 9 C -0.542 4.542 10 H 0.055 0.945 11 C 0.068 3.932 12 N -0.887 5.887 13 Si 0.879 3.121 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.096 3.904 18 C -0.106 4.106 19 C -0.049 4.049 20 C -0.177 4.177 21 C 0.081 3.919 22 N -0.497 5.497 23 C 0.103 3.897 24 C -0.094 4.094 25 C -0.054 4.054 26 C -0.143 4.143 27 C -0.141 4.141 28 C -0.093 4.093 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.261 0.739 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.043 0.957 51 H 0.052 0.948 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 10.444 2.501 10.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.148 4.148 5 C -0.010 4.010 6 H 0.072 0.928 7 N -0.258 5.258 8 C 0.056 3.944 9 C -0.582 4.582 10 H 0.074 0.926 11 C -0.134 4.134 12 N -0.526 5.526 13 Si 0.707 3.293 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.033 4.033 18 C -0.108 4.108 19 C -0.076 4.076 20 C -0.197 4.197 21 C -0.077 4.077 22 N -0.206 5.206 23 C -0.054 4.054 24 C -0.132 4.132 25 C -0.054 4.054 26 C -0.200 4.200 27 C -0.198 4.198 28 C -0.131 4.131 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.062 0.938 51 H 0.070 0.930 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.699 10.915 2.152 11.254 hybrid contribution -2.554 -1.434 0.526 2.976 sum -0.855 9.482 2.678 9.890 Atomic orbital electron populations 1.21957 0.95683 1.02329 1.00705 1.20732 0.95377 0.98706 0.95028 0.92895 1.21598 1.01035 0.96262 0.95938 1.21241 0.97952 0.91890 0.89931 0.92821 1.62709 1.53884 1.09468 0.99754 1.19854 0.95396 0.80948 0.98172 1.21674 0.94323 0.92206 1.49959 0.92642 1.24902 0.96642 0.96763 0.95132 1.69948 1.32505 1.01009 1.49090 0.86798 0.86068 0.78101 0.78329 1.20758 1.21231 1.19923 1.20883 0.96077 0.98199 0.88093 1.20845 0.97465 0.95465 0.97069 1.21791 0.98341 0.94906 0.92520 1.22092 0.98371 1.01057 0.98211 1.22542 0.95440 0.90812 0.98866 1.67600 1.27494 1.17181 1.08285 1.22505 0.91807 0.99160 0.91960 1.21450 0.98685 1.01470 0.91578 1.20344 0.95464 0.94049 0.95590 1.22261 0.98726 1.01336 0.97714 1.21998 0.96608 1.00987 1.00204 1.21242 1.00453 0.94684 0.96717 0.91866 0.93333 0.93185 0.91913 0.92411 0.95114 0.94513 0.92886 0.93038 0.91408 0.83911 0.85545 0.83748 0.83539 0.90542 0.92583 0.93464 0.92649 0.93123 0.92141 0.92428 0.93838 0.92960 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.88 37.08 0.33 -1.51 16 2 C -0.08 -1.00 2.60 -91.85 -0.24 -1.24 16 3 H 0.05 0.61 8.29 -50.70 -0.42 0.19 16 4 C -0.11 -1.60 4.36 -27.26 -0.12 -1.72 16 5 C 0.10 1.71 1.43 -67.79 -0.10 1.62 16 6 H 0.05 1.06 4.50 -52.11 -0.23 0.82 16 7 N -0.53 -10.45 4.55 -229.70 -1.05 -11.50 16 8 C 0.18 4.29 4.40 -4.97 -0.02 4.27 16 9 C -0.54 -13.49 7.52 -34.44 -0.26 -13.75 16 10 H 0.06 1.39 5.86 -52.48 -0.31 1.08 16 11 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 13 Si 0.88 20.37 29.54 -169.99 -5.02 15.35 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.10 1.73 4.76 -4.97 -0.02 1.70 16 18 C -0.11 -1.92 4.90 -104.48 -0.51 -2.43 16 19 C -0.05 -0.92 8.07 -39.27 -0.32 -1.24 16 20 C -0.18 -2.91 10.11 -39.44 -0.40 -3.31 16 21 C 0.08 1.27 11.18 -17.55 -0.20 1.08 16 22 N -0.50 -8.62 10.36 -13.25 -0.14 -8.75 16 23 C 0.10 1.75 10.86 -17.55 -0.19 1.56 16 24 C -0.09 -1.62 3.57 -27.16 -0.10 -1.71 16 25 C -0.05 -0.77 0.71 -154.56 -0.11 -0.88 16 26 C -0.14 -1.85 8.10 37.90 0.31 -1.55 16 27 C -0.14 -2.09 8.01 37.22 0.30 -1.80 16 28 C -0.09 -1.18 4.12 -28.06 -0.12 -1.29 16 29 H 0.06 0.88 4.87 -51.93 -0.25 0.63 16 30 H 0.05 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.92 8.17 -51.75 -0.42 0.50 16 33 H 0.06 0.82 6.04 -51.74 -0.31 0.50 16 34 H 0.03 0.80 6.27 -51.93 -0.33 0.48 16 35 H 0.04 0.95 5.86 -51.93 -0.30 0.65 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.05 1.02 6.66 -51.93 -0.35 0.67 16 38 H 0.07 1.07 5.66 -51.93 -0.29 0.77 16 39 H 0.14 2.94 8.01 -52.49 -0.42 2.52 16 40 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.08 1.55 6.26 -51.76 -0.32 1.23 16 44 H 0.06 0.97 8.11 -51.76 -0.42 0.55 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.62 8.05 -51.93 -0.42 0.21 16 48 H 0.06 0.95 4.71 -51.93 -0.24 0.70 16 49 H 0.06 0.94 8.12 -51.92 -0.42 0.52 16 50 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.05 0.63 7.92 -51.22 -0.41 0.22 16 52 H 0.05 0.61 7.92 -51.24 -0.41 0.20 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -26.95 382.48 -10.35 -37.31 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.79 Total: 6.17 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.86 Total: -20.52 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.45 Total: -44.07 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -26.95 -10.35 -37.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092868649.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.557 kcal (2) G-P(sol) polarization free energy of solvation -26.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds