Wall clock time and date at job start Tue Mar 31 2020 11:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52845 * 1 3 3 H 1.11130 * 106.60633 * 2 1 4 4 C 1.52204 * 110.61854 * 244.04399 * 2 1 3 5 5 C 1.52770 * 110.74816 * 285.48776 * 4 2 1 6 6 H 1.08674 * 110.35452 * 60.56004 * 5 4 2 7 7 N 1.47267 * 109.09568 * 180.02562 * 5 4 2 8 8 C 1.46900 * 110.99752 * 178.04066 * 7 5 4 9 9 C 1.50705 * 109.47448 * 59.33162 * 8 7 5 10 10 H 1.08006 * 119.99350 * 355.26856 * 9 8 7 11 11 C 1.37872 * 120.00411 * 175.26645 * 9 8 7 12 12 N 1.31521 * 119.99621 * 359.72597 * 11 9 8 13 13 Si 1.86797 * 120.00370 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47058 * 89.99842 * 13 11 9 15 15 H 1.48495 * 109.47297 * 210.00591 * 13 11 9 16 16 H 1.48503 * 109.46654 * 330.00140 * 13 11 9 17 17 C 1.46906 * 110.99908 * 301.98916 * 7 5 4 18 18 C 1.50699 * 109.46940 * 170.00396 * 17 7 5 19 19 C 1.38673 * 120.41856 * 90.00309 * 18 17 7 20 20 C 1.38633 * 118.41777 * 180.02562 * 19 18 17 21 21 C 1.38230 * 119.16281 * 0.02562 * 20 19 18 22 22 N 1.31850 * 120.76395 * 359.97438 * 21 20 19 23 23 C 1.31886 * 121.72613 * 359.70454 * 22 21 20 24 24 C 1.52697 * 108.89619 * 299.08339 * 5 4 2 25 25 C 1.52469 * 110.81884 * 61.62052 * 24 5 4 26 26 C 1.54420 * 107.70780 * 188.46517 * 25 24 5 27 27 C 1.53112 * 110.03172 * 71.67493 * 25 24 5 28 28 C 1.51520 * 111.72211 * 117.03397 * 2 1 3 29 29 H 1.09004 * 109.46924 * 175.95629 * 1 2 3 30 30 H 1.08993 * 109.47047 * 295.95546 * 1 2 3 31 31 H 1.08997 * 109.46994 * 55.95583 * 1 2 3 32 32 H 1.09317 * 109.58952 * 164.94134 * 4 2 1 33 33 H 1.09336 * 109.56565 * 45.98094 * 4 2 1 34 34 H 1.09003 * 109.47113 * 299.33430 * 8 7 5 35 35 H 1.08995 * 109.47156 * 179.33300 * 8 7 5 36 36 H 0.97003 * 119.99570 * 179.97438 * 12 11 9 37 37 H 1.08992 * 109.47189 * 290.00435 * 17 7 5 38 38 H 1.08994 * 109.46925 * 50.00770 * 17 7 5 39 39 H 1.07992 * 120.78919 * 0.02562 * 19 18 17 40 40 H 1.08003 * 120.41266 * 180.02562 * 20 19 18 41 41 H 1.07997 * 119.61319 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.62219 * 180.30978 * 23 22 21 43 43 H 1.09306 * 109.26730 * 182.26604 * 24 5 4 44 44 H 1.09295 * 109.27802 * 300.94874 * 24 5 4 45 45 H 1.09006 * 109.46965 * 181.67436 * 26 25 24 46 46 H 1.08998 * 109.47153 * 301.67161 * 26 25 24 47 47 H 1.08999 * 109.47307 * 61.67802 * 26 25 24 48 48 H 1.08996 * 109.47088 * 294.86151 * 27 25 24 49 49 H 1.09007 * 109.46851 * 54.85527 * 27 25 24 50 50 H 1.08999 * 109.47525 * 174.85628 * 27 25 24 51 51 H 1.10249 * 108.74564 * 204.61629 * 28 2 1 52 52 H 1.10211 * 108.80136 * 319.69967 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8461 1.0650 0.0000 4 6 2.0644 -0.6235 -1.2809 5 6 1.8980 -2.1419 -1.2545 6 1 0.8472 -2.4055 -1.1685 7 7 2.4275 -2.7064 -2.5074 8 6 2.3304 -4.1722 -2.5067 9 6 0.8882 -4.5801 -2.3488 10 1 0.1300 -3.8293 -2.1814 11 6 0.5367 -5.9115 -2.4179 12 7 1.4594 -6.8251 -2.6271 13 14 -1.2509 -6.4170 -2.2229 14 1 -1.9096 -6.4302 -3.5537 15 1 -1.3191 -7.7737 -1.6232 16 1 -1.9452 -5.4486 -1.3366 17 6 1.7421 -2.1340 -3.6738 18 6 2.4652 -2.5418 -4.9315 19 6 2.1171 -3.7090 -5.5945 20 6 2.8101 -4.0446 -6.7473 21 6 3.8181 -3.2110 -7.1942 22 7 4.1222 -2.1086 -6.5379 23 6 3.4802 -1.7548 -5.4415 24 6 2.6894 -2.7058 -0.0767 25 6 2.1609 -2.1567 1.2439 26 6 3.1351 -2.5957 2.3586 27 6 0.7955 -2.7736 1.5595 28 6 2.0892 -0.6398 1.2538 29 1 -0.3633 -1.0252 -0.0725 30 1 -0.3633 0.4498 0.9240 31 1 -0.3633 0.5753 -0.8515 32 1 3.1243 -0.3798 -1.3915 33 1 1.5233 -0.2177 -2.1399 34 1 2.9145 -4.5746 -1.6790 35 1 2.7173 -4.5624 -3.4479 36 1 1.2122 -7.7618 -2.6754 37 1 0.7165 -2.5013 -3.7090 38 1 1.7361 -1.0469 -3.5944 39 1 1.3251 -4.3413 -5.2216 40 1 2.5653 -4.9461 -7.2894 41 1 4.3629 -3.4657 -8.0912 42 1 3.7540 -0.8418 -4.9336 43 1 2.6074 -3.7957 -0.0758 44 1 3.7427 -2.4357 -0.1873 45 1 2.7676 -2.2424 3.3222 46 1 3.2046 -3.6833 2.3729 47 1 4.1207 -2.1710 2.1679 48 1 0.0705 -2.4535 0.8113 49 1 0.8761 -3.8606 1.5457 50 1 0.4681 -2.4461 2.5462 51 1 3.1021 -0.2424 1.4318 52 1 1.4815 -0.3225 2.1167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092868649.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:24 Heat of formation + Delta-G solvation = -0.112625 kcal Electronic energy + Delta-G solvation = -28568.311393 eV Core-core repulsion = 25144.938546 eV Total energy + Delta-G solvation = -3423.372847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24854 -40.56742 -37.85192 -35.02403 -34.47736 -33.58827 -32.57199 -30.77873 -29.02378 -28.38254 -27.36126 -27.07125 -26.14939 -24.55040 -24.20468 -22.65449 -21.49908 -20.77156 -19.07033 -18.18352 -17.77386 -17.28648 -16.85784 -16.70050 -16.07245 -15.58899 -15.48006 -15.15841 -14.98773 -14.90210 -14.53936 -14.40151 -14.14521 -14.05869 -13.89578 -13.81760 -13.35528 -13.14511 -13.00976 -12.93587 -12.85941 -12.66222 -12.58329 -12.30339 -12.16944 -11.91655 -11.86710 -11.76903 -11.65243 -11.60336 -11.36964 -11.05342 -10.85544 -10.65346 -10.48244 -10.44777 -10.32078 -9.79181 -8.88878 -8.09226 -6.26530 0.29891 0.45717 1.31882 1.35122 1.42696 2.36845 2.92243 3.15067 3.46146 3.66658 3.80493 3.85189 4.00426 4.04070 4.13867 4.22763 4.25111 4.29103 4.32808 4.37148 4.48766 4.54996 4.60642 4.73378 4.75788 4.81681 4.84955 4.90089 4.93220 4.99269 5.01348 5.04043 5.06889 5.14614 5.16746 5.24223 5.27163 5.28433 5.33688 5.36960 5.39534 5.43291 5.53292 5.55501 5.59141 5.63878 5.69974 5.74613 5.85590 5.89803 6.15235 6.35511 6.65205 6.94787 7.10302 7.43177 8.91312 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.005869 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.094233 B = 4769.897005 C = 6592.885796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 H 0.079 0.921 4 C -0.103 4.103 5 C 0.101 3.899 6 H 0.029 0.971 7 N -0.534 5.534 8 C 0.203 3.797 9 C -0.532 4.532 10 H 0.052 0.948 11 C 0.021 3.979 12 N -0.922 5.922 13 Si 0.936 3.064 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.269 1.269 17 C 0.103 3.897 18 C -0.121 4.121 19 C -0.070 4.070 20 C -0.179 4.179 21 C 0.086 3.914 22 N -0.507 5.507 23 C 0.104 3.896 24 C -0.086 4.086 25 C -0.052 4.052 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.092 4.092 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.064 0.936 34 H -0.001 1.001 35 H 0.011 0.989 36 H 0.261 0.739 37 H 0.028 0.972 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.169 0.831 43 H 0.031 0.969 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.037 0.963 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.029 0.971 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 13.175 2.825 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 H 0.097 0.903 4 C -0.140 4.140 5 C -0.007 4.007 6 H 0.047 0.953 7 N -0.257 5.257 8 C 0.077 3.923 9 C -0.571 4.571 10 H 0.070 0.930 11 C -0.179 4.179 12 N -0.562 5.562 13 Si 0.762 3.238 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.194 1.194 17 C -0.025 4.025 18 C -0.123 4.123 19 C -0.097 4.097 20 C -0.199 4.199 21 C -0.071 4.071 22 N -0.216 5.216 23 C -0.053 4.053 24 C -0.124 4.124 25 C -0.052 4.052 26 C -0.197 4.197 27 C -0.195 4.195 28 C -0.130 4.130 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.017 0.983 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.164 0.836 41 H 0.199 0.801 42 H 0.186 0.814 43 H 0.050 0.950 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.048 0.952 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.705 13.667 2.479 13.994 hybrid contribution -2.523 -2.294 0.383 3.432 sum -0.818 11.372 2.862 11.755 Atomic orbital electron populations 1.21945 0.95476 1.01144 1.01960 1.20746 0.95496 0.99828 0.93742 0.90263 1.21546 1.01536 0.93259 0.97704 1.21275 0.96232 0.94350 0.88861 0.95312 1.62661 1.54556 1.07013 1.01489 1.19394 0.93962 0.83659 0.95314 1.21806 0.94868 0.92042 1.48424 0.92993 1.25575 1.00094 0.96969 0.95214 1.70066 1.34278 1.01157 1.50704 0.85892 0.81920 0.77572 0.78400 1.20155 1.21270 1.19410 1.20871 0.94548 0.99559 0.87562 1.20877 0.98415 0.95809 0.97199 1.21694 0.98636 0.95282 0.94089 1.22327 0.98139 1.01938 0.97450 1.23115 0.94768 0.89783 0.99459 1.67693 1.27607 1.17845 1.08456 1.22781 0.91018 0.99549 0.91924 1.21362 0.98698 0.98751 0.93621 1.20329 0.95113 0.95729 0.94043 1.22228 0.98910 1.00366 0.98208 1.21973 0.96977 0.99284 1.01291 1.21221 1.01739 0.92560 0.97455 0.94174 0.91582 0.92558 0.91550 0.91799 0.98313 0.97043 0.93036 0.95391 0.88507 0.86961 0.83577 0.80071 0.81380 0.95019 0.92882 0.91288 0.94349 0.92313 0.93198 0.95160 0.91348 0.91653 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.88 71.93 0.64 -2.64 16 2 C -0.08 -1.76 2.60 -11.59 -0.03 -1.79 16 3 H 0.08 1.45 8.29 -1.23 -0.01 1.44 16 4 C -0.10 -2.80 4.36 30.25 0.13 -2.66 16 5 C 0.10 3.58 1.43 44.67 0.06 3.65 16 6 H 0.03 1.18 4.50 -2.56 -0.01 1.17 16 7 N -0.53 -21.61 4.55 -880.63 -4.01 -25.62 16 8 C 0.20 10.22 4.40 85.56 0.38 10.59 16 9 C -0.53 -27.93 7.52 25.60 0.19 -27.74 16 10 H 0.05 2.73 5.86 -2.91 -0.02 2.71 16 11 C 0.02 1.13 5.46 84.65 0.46 1.60 16 12 N -0.92 -53.49 13.29 21.45 0.28 -53.21 16 13 Si 0.94 43.19 29.54 68.60 2.03 45.22 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 C 0.10 3.76 4.76 85.56 0.41 4.17 16 18 C -0.12 -4.41 4.90 -19.77 -0.10 -4.51 16 19 C -0.07 -2.72 8.07 22.47 0.18 -2.54 16 20 C -0.18 -5.81 10.11 22.36 0.23 -5.58 16 21 C 0.09 2.55 11.18 84.69 0.95 3.49 16 22 N -0.51 -16.69 10.36 -195.84 -2.03 -18.72 16 23 C 0.10 3.42 10.86 84.67 0.92 4.34 16 24 C -0.09 -3.07 3.57 30.32 0.11 -2.96 16 25 C -0.05 -1.43 0.71 -52.21 -0.04 -1.47 16 26 C -0.14 -3.47 8.10 72.46 0.59 -2.88 16 27 C -0.14 -4.11 8.01 72.02 0.58 -3.53 16 28 C -0.09 -2.04 4.12 29.73 0.12 -1.92 16 29 H 0.04 1.08 4.87 -2.38 -0.01 1.06 16 30 H 0.07 1.23 8.05 -2.39 -0.02 1.21 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.78 8.17 -2.22 -0.02 1.77 16 33 H 0.06 1.66 6.04 -2.21 -0.01 1.64 16 34 H 0.00 -0.06 6.27 -2.39 -0.01 -0.08 16 35 H 0.01 0.63 5.86 -2.39 -0.01 0.62 16 36 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.03 1.15 6.66 -2.39 -0.02 1.14 16 38 H 0.10 2.95 5.66 -2.39 -0.01 2.93 16 39 H 0.11 4.98 8.01 -2.91 -0.02 4.96 16 40 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 41 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.17 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.03 1.38 6.26 -2.22 -0.01 1.37 16 44 H 0.05 1.87 8.11 -2.23 -0.02 1.85 16 45 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.06 1.35 8.05 -2.39 -0.02 1.33 16 48 H 0.05 1.58 4.71 -2.39 -0.01 1.57 16 49 H 0.03 1.03 8.12 -2.38 -0.02 1.01 16 50 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.06 1.31 7.92 -1.72 -0.01 1.30 16 52 H 0.07 1.36 7.92 -1.74 -0.01 1.34 16 Total: -1.00 -61.43 382.48 2.96 -58.47 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.91 Total: 26.25 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 5.78 Total: -32.38 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -5.75 Total: -97.55 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -61.43 2.96 -58.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092868649.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.356 kcal (2) G-P(sol) polarization free energy of solvation -61.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds