Wall clock time and date at job start Tue Mar 31 2020 11:26:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09008 * 109.46993 * 2 1
4 4 C 1.52999 * 109.47269 * 120.00233 * 2 1 3
5 5 C 1.52998 * 109.46797 * 179.97438 * 4 2 1
6 6 H 1.09000 * 109.47149 * 60.00374 * 5 4 2
7 7 N 1.46899 * 109.46978 * 180.02562 * 5 4 2
8 8 C 1.46905 * 111.00407 * 176.04601 * 7 5 4
9 9 C 1.50705 * 109.46816 * 61.35005 * 8 7 5
10 10 H 1.07998 * 119.99909 * 5.10532 * 9 8 7
11 11 C 1.37875 * 119.99739 * 185.10061 * 9 8 7
12 12 N 1.31519 * 120.00181 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 119.99843 * 180.02562 * 11 9 8
14 14 H 1.48493 * 109.47074 * 59.99901 * 13 11 9
15 15 H 1.48495 * 109.47073 * 180.02562 * 13 11 9
16 16 H 1.48508 * 109.46999 * 300.00067 * 13 11 9
17 17 C 1.46904 * 111.00187 * 300.00300 * 7 5 4
18 18 C 1.50693 * 109.47447 * 167.94501 * 17 7 5
19 19 C 1.38674 * 120.41838 * 95.59805 * 18 17 7
20 20 C 1.38634 * 118.42019 * 180.02562 * 19 18 17
21 21 C 1.38227 * 119.16162 * 0.02562 * 20 19 18
22 22 N 1.31859 * 120.76391 * 0.02562 * 21 20 19
23 23 C 1.31893 * 121.72510 * 359.69810 * 22 21 20
24 24 C 1.52997 * 109.47459 * 300.00006 * 5 4 2
25 25 C 1.52999 * 109.47121 * 60.00192 * 24 5 4
26 26 C 1.52996 * 109.47317 * 180.02562 * 25 24 5
27 27 C 1.52996 * 109.47118 * 59.99877 * 25 24 5
28 28 C 1.52997 * 109.47042 * 240.00273 * 2 1 3
29 29 H 1.08995 * 109.47321 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.47344 * 299.99510 * 1 2 3
31 31 H 1.09000 * 109.47705 * 59.99535 * 1 2 3
32 32 H 1.08993 * 109.47030 * 299.99718 * 4 2 1
33 33 H 1.09000 * 109.46966 * 60.00040 * 4 2 1
34 34 H 1.08993 * 109.47387 * 181.35193 * 8 7 5
35 35 H 1.09001 * 109.46901 * 301.35234 * 8 7 5
36 36 H 0.96995 * 120.00125 * 179.97438 * 12 11 9
37 37 H 1.09004 * 109.46524 * 287.94522 * 17 7 5
38 38 H 1.08994 * 109.47105 * 47.93892 * 17 7 5
39 39 H 1.07998 * 120.79385 * 0.02997 * 19 18 17
40 40 H 1.07996 * 120.42196 * 179.97438 * 20 19 18
41 41 H 1.08002 * 119.61989 * 180.02562 * 21 20 19
42 42 H 1.07991 * 119.61608 * 180.31550 * 23 22 21
43 43 H 1.09000 * 109.47240 * 300.00312 * 24 5 4
44 44 H 1.09005 * 109.47456 * 180.02562 * 24 5 4
45 45 H 1.08998 * 109.47551 * 180.02562 * 26 25 24
46 46 H 1.09006 * 109.47167 * 299.99735 * 26 25 24
47 47 H 1.09000 * 109.47417 * 59.99891 * 26 25 24
48 48 H 1.08993 * 109.47494 * 300.00113 * 27 25 24
49 49 H 1.09006 * 109.46942 * 60.00524 * 27 25 24
50 50 H 1.08998 * 109.47077 * 179.97438 * 27 25 24
51 51 H 1.09011 * 109.47155 * 59.99772 * 28 2 1
52 52 H 1.09000 * 109.47240 * 299.99988 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5700 -0.7218 1.2488
6 1 3.9336 0.3058 1.2486
7 7 4.0597 -1.4148 2.4478
8 6 5.5251 -1.5174 2.4351
9 6 6.1254 -0.1351 2.4303
10 1 5.4867 0.7312 2.5194
11 6 7.4899 0.0235 2.3124
12 7 8.2676 -1.0315 2.2036
13 14 8.2340 1.7369 2.3072
14 1 7.9016 2.4248 3.5805
15 1 9.7090 1.6355 2.1692
16 1 7.6827 2.5125 1.1670
17 6 3.5892 -0.7490 3.6699
18 6 3.8530 -1.6365 4.8589
19 6 4.9989 -1.4667 5.6212
20 6 5.2003 -2.3066 6.7056
21 6 4.2592 -3.2787 6.9887
22 7 3.1813 -3.4119 6.2410
23 6 2.9544 -2.6275 5.2052
24 6 4.0795 -1.4433 -0.0005
25 6 3.5694 -0.7220 -1.2497
26 6 4.0784 -1.4439 -2.4990
27 6 4.0798 0.7203 -1.2499
28 6 2.0399 -0.7212 -1.2493
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5138 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 1.6767 -0.2075 2.1391
33 1 1.6767 -1.7490 1.2491
34 1 5.8594 -2.0556 3.3220
35 1 5.8439 -2.0551 1.5421
36 1 9.2275 -0.9199 2.1202
37 1 4.1193 0.1950 3.7963
38 1 2.5193 -0.5570 3.5900
39 1 5.7173 -0.6985 5.3760
40 1 6.0817 -2.2032 7.3211
41 1 4.4085 -3.9367 7.8320
42 1 2.0577 -2.7635 4.6191
43 1 3.7158 -2.4708 -0.0003
44 1 5.1695 -1.4441 -0.0006
45 1 3.7154 -0.9298 -3.3889
46 1 5.1684 -1.4446 -2.4995
47 1 3.7144 -2.4713 -2.4986
48 1 3.7169 1.2343 -0.3600
49 1 5.1699 0.7199 -1.2502
50 1 3.7169 1.2340 -2.1401
51 1 1.6765 -0.2073 -2.1393
52 1 1.6766 -1.7488 -1.2493
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000092868650.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:27
Heat of formation + Delta-G solvation = 11.357988 kcal
Electronic energy + Delta-G solvation = -28418.806323 eV
Core-core repulsion = 24995.930878 eV
Total energy + Delta-G solvation = -3422.875444 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-39.92954 -39.37999 -36.37560 -33.80371 -32.63896 -32.21266 -31.24338 -29.34264
-27.36916 -26.99412 -26.38701 -25.63554 -24.67118 -23.03083 -22.54849 -21.22777
-20.11084 -19.29059 -18.10660 -16.63029 -16.29985 -15.87334 -15.37092 -14.84443
-14.70072 -14.65262 -14.19457 -14.09970 -13.64900 -13.36595 -13.04230 -12.91643
-12.81884 -12.48355 -12.41680 -12.39773 -12.20438 -11.88180 -11.58530 -11.53618
-11.49876 -11.18672 -11.07126 -11.00059 -10.68931 -10.53668 -10.41268 -10.35573
-10.23580 -10.11292 -9.88087 -9.77640 -9.52070 -9.31605 -9.15424 -8.98290
-8.45969 -8.43909 -7.16380 -6.06100 -4.15252 1.60426 1.82458 3.22399
3.28964 3.30831 4.26318 4.35311 4.82286 4.88914 4.91517 5.02264
5.23577 5.26538 5.30027 5.31128 5.46824 5.53338 5.54617 5.62093
5.65566 5.75045 5.78880 5.81279 5.87780 5.91519 5.98271 6.02613
6.07533 6.11505 6.16181 6.18376 6.21355 6.25158 6.28514 6.37671
6.43335 6.46550 6.51842 6.65602 6.65915 6.67889 6.71681 6.79630
6.94916 7.04139 7.10614 7.19544 7.29529 7.52688 7.88618 8.04884
8.26425 8.28139 8.41463 8.95266 9.51117 10.98132
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.009090 B = 0.006016 C = 0.004085
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3079.441355 B = 4653.172566 C = 6851.916462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.093 4.093
3 H 0.069 0.931
4 C -0.110 4.110
5 C 0.097 3.903
6 H 0.050 0.950
7 N -0.533 5.533
8 C 0.184 3.816
9 C -0.544 4.544
10 H 0.054 0.946
11 C 0.069 3.931
12 N -0.888 5.888
13 Si 0.880 3.120
14 H -0.278 1.278
15 H -0.287 1.287
16 H -0.277 1.277
17 C 0.094 3.906
18 C -0.104 4.104
19 C -0.053 4.053
20 C -0.178 4.178
21 C 0.081 3.919
22 N -0.496 5.496
23 C 0.106 3.894
24 C -0.095 4.095
25 C -0.062 4.062
26 C -0.138 4.138
27 C -0.141 4.141
28 C -0.098 4.098
29 H 0.052 0.948
30 H 0.050 0.950
31 H 0.048 0.952
32 H 0.056 0.944
33 H 0.063 0.937
34 H 0.028 0.972
35 H 0.039 0.961
36 H 0.262 0.738
37 H 0.053 0.947
38 H 0.068 0.932
39 H 0.140 0.860
40 H 0.127 0.873
41 H 0.146 0.854
42 H 0.148 0.852
43 H 0.056 0.944
44 H 0.079 0.921
45 H 0.047 0.953
46 H 0.055 0.945
47 H 0.051 0.949
48 H 0.060 0.940
49 H 0.057 0.943
50 H 0.042 0.958
51 H 0.053 0.947
52 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.993 0.846 -1.725 11.160
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.112 4.112
3 H 0.087 0.913
4 C -0.148 4.148
5 C -0.012 4.012
6 H 0.068 0.932
7 N -0.256 5.256
8 C 0.059 3.941
9 C -0.583 4.583
10 H 0.072 0.928
11 C -0.134 4.134
12 N -0.526 5.526
13 Si 0.708 3.292
14 H -0.204 1.204
15 H -0.213 1.213
16 H -0.203 1.203
17 C -0.035 4.035
18 C -0.106 4.106
19 C -0.080 4.080
20 C -0.198 4.198
21 C -0.077 4.077
22 N -0.205 5.205
23 C -0.051 4.051
24 C -0.133 4.133
25 C -0.063 4.063
26 C -0.196 4.196
27 C -0.198 4.198
28 C -0.136 4.136
29 H 0.071 0.929
30 H 0.069 0.931
31 H 0.068 0.932
32 H 0.074 0.926
33 H 0.082 0.918
34 H 0.046 0.954
35 H 0.057 0.943
36 H 0.072 0.928
37 H 0.071 0.929
38 H 0.086 0.914
39 H 0.157 0.843
40 H 0.145 0.855
41 H 0.163 0.837
42 H 0.166 0.834
43 H 0.075 0.925
44 H 0.097 0.903
45 H 0.066 0.934
46 H 0.074 0.926
47 H 0.070 0.930
48 H 0.079 0.921
49 H 0.076 0.924
50 H 0.061 0.939
51 H 0.071 0.929
52 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -11.591 -0.358 -1.550 11.700
hybrid contribution 1.775 2.445 -0.217 3.029
sum -9.816 2.086 -1.767 10.190
Atomic orbital electron populations
1.21812 0.95890 1.01435 1.01002 1.21158 0.94600 0.99948 0.95463
0.91257 1.21758 0.96293 1.00431 0.96285 1.21375 0.92293 0.97115
0.90377 0.93193 1.62576 1.14503 1.49204 0.99330 1.19818 0.80370
0.95853 0.98092 1.21618 0.92105 0.93442 1.51124 0.92770 1.24893
0.97292 0.96085 0.95088 1.69928 1.04559 1.28643 1.49460 0.86851
0.78301 0.85444 0.78616 1.20372 1.21286 1.20258 1.20913 0.99287
0.94888 0.88395 1.20847 0.95036 0.97878 0.96872 1.21729 0.95911
0.97967 0.92343 1.22080 1.00703 0.97749 0.99219 1.22551 0.90318
0.96549 0.98238 1.67617 1.21131 1.25745 1.05977 1.22511 0.98841
0.90732 0.93046 1.21587 1.01939 0.98039 0.91737 1.20497 0.94496
0.95765 0.95499 1.21831 1.01232 0.99749 0.96740 1.21929 1.01467
0.95538 1.00864 1.21611 0.94965 1.00121 0.96862 0.92914 0.93056
0.93249 0.92585 0.91811 0.95441 0.94327 0.92812 0.92917 0.91398
0.84264 0.85526 0.83712 0.83446 0.92544 0.90279 0.93400 0.92580
0.93039 0.92118 0.92430 0.93886 0.92854 0.92306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16
2 C -0.09 -1.17 2.45 -90.62 -0.22 -1.39 16
3 H 0.07 0.92 6.43 -51.92 -0.33 0.58 16
4 C -0.11 -1.59 4.29 -26.73 -0.11 -1.70 16
5 C 0.10 1.70 1.31 -67.72 -0.09 1.61 16
6 H 0.05 0.99 5.07 -51.93 -0.26 0.72 16
7 N -0.53 -10.43 4.55 -229.52 -1.05 -11.48 16
8 C 0.18 4.37 4.43 -4.97 -0.02 4.35 16
9 C -0.54 -13.63 7.53 -34.44 -0.26 -13.88 16
10 H 0.05 1.36 5.87 -52.49 -0.31 1.05 16
11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16
12 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16
13 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16
14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16
15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
17 C 0.09 1.68 4.79 -4.98 -0.02 1.66 16
18 C -0.10 -1.86 4.79 -104.48 -0.50 -2.36 16
19 C -0.05 -0.96 8.54 -39.27 -0.34 -1.29 16
20 C -0.18 -2.82 10.11 -39.44 -0.40 -3.22 16
21 C 0.08 1.25 11.18 -17.54 -0.20 1.05 16
22 N -0.50 -8.52 10.36 -13.25 -0.14 -8.66 16
23 C 0.11 1.79 10.88 -17.55 -0.19 1.60 16
24 C -0.10 -1.66 3.65 -26.73 -0.10 -1.76 16
25 C -0.06 -0.90 0.77 -154.54 -0.12 -1.02 16
26 C -0.14 -1.84 8.47 37.16 0.31 -1.53 16
27 C -0.14 -2.12 7.78 37.16 0.29 -1.83 16
28 C -0.10 -1.24 4.01 -26.76 -0.11 -1.35 16
29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.06 0.79 6.16 -51.93 -0.32 0.47 16
33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
34 H 0.03 0.72 6.36 -51.93 -0.33 0.39 16
35 H 0.04 1.01 6.15 -51.93 -0.32 0.69 16
36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
37 H 0.05 1.04 6.25 -51.93 -0.32 0.72 16
38 H 0.07 1.07 5.73 -51.93 -0.30 0.77 16
39 H 0.14 2.70 8.06 -52.49 -0.42 2.28 16
40 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16
41 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16
42 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16
43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
44 H 0.08 1.66 6.31 -51.93 -0.33 1.33 16
45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
48 H 0.06 0.95 4.81 -51.93 -0.25 0.70 16
49 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16
50 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
51 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16
52 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
LS Contribution 386.09 15.07 5.82 5.82
Total: -1.00 -27.19 386.09 -10.45 -37.65
By element:
Atomic # 1 Polarization: 14.80 SS G_CDS: -8.97 Total: 5.83 kcal
Atomic # 6 Polarization: -18.70 SS G_CDS: -1.83 Total: -20.53 kcal
Atomic # 7 Polarization: -43.77 SS G_CDS: -0.45 Total: -44.22 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -27.19 -10.45 -37.65 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000092868650.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.003 kcal
(2) G-P(sol) polarization free energy of solvation -27.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.809 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.358 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds