Wall clock time and date at job start Tue Mar 31 2020 11:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46993 * 2 1 4 4 C 1.52999 * 109.47269 * 120.00233 * 2 1 3 5 5 C 1.52998 * 109.46797 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47149 * 60.00374 * 5 4 2 7 7 N 1.46899 * 109.46978 * 180.02562 * 5 4 2 8 8 C 1.46905 * 111.00407 * 176.04601 * 7 5 4 9 9 C 1.50705 * 109.46816 * 61.35005 * 8 7 5 10 10 H 1.07998 * 119.99909 * 5.10532 * 9 8 7 11 11 C 1.37875 * 119.99739 * 185.10061 * 9 8 7 12 12 N 1.31519 * 120.00181 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99843 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47074 * 59.99901 * 13 11 9 15 15 H 1.48495 * 109.47073 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46999 * 300.00067 * 13 11 9 17 17 C 1.46904 * 111.00187 * 300.00300 * 7 5 4 18 18 C 1.50693 * 109.47447 * 167.94501 * 17 7 5 19 19 C 1.38674 * 120.41838 * 95.59805 * 18 17 7 20 20 C 1.38634 * 118.42019 * 180.02562 * 19 18 17 21 21 C 1.38227 * 119.16162 * 0.02562 * 20 19 18 22 22 N 1.31859 * 120.76391 * 0.02562 * 21 20 19 23 23 C 1.31893 * 121.72510 * 359.69810 * 22 21 20 24 24 C 1.52997 * 109.47459 * 300.00006 * 5 4 2 25 25 C 1.52999 * 109.47121 * 60.00192 * 24 5 4 26 26 C 1.52996 * 109.47317 * 180.02562 * 25 24 5 27 27 C 1.52996 * 109.47118 * 59.99877 * 25 24 5 28 28 C 1.52997 * 109.47042 * 240.00273 * 2 1 3 29 29 H 1.08995 * 109.47321 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47344 * 299.99510 * 1 2 3 31 31 H 1.09000 * 109.47705 * 59.99535 * 1 2 3 32 32 H 1.08993 * 109.47030 * 299.99718 * 4 2 1 33 33 H 1.09000 * 109.46966 * 60.00040 * 4 2 1 34 34 H 1.08993 * 109.47387 * 181.35193 * 8 7 5 35 35 H 1.09001 * 109.46901 * 301.35234 * 8 7 5 36 36 H 0.96995 * 120.00125 * 179.97438 * 12 11 9 37 37 H 1.09004 * 109.46524 * 287.94522 * 17 7 5 38 38 H 1.08994 * 109.47105 * 47.93892 * 17 7 5 39 39 H 1.07998 * 120.79385 * 0.02997 * 19 18 17 40 40 H 1.07996 * 120.42196 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.61989 * 180.02562 * 21 20 19 42 42 H 1.07991 * 119.61608 * 180.31550 * 23 22 21 43 43 H 1.09000 * 109.47240 * 300.00312 * 24 5 4 44 44 H 1.09005 * 109.47456 * 180.02562 * 24 5 4 45 45 H 1.08998 * 109.47551 * 180.02562 * 26 25 24 46 46 H 1.09006 * 109.47167 * 299.99735 * 26 25 24 47 47 H 1.09000 * 109.47417 * 59.99891 * 26 25 24 48 48 H 1.08993 * 109.47494 * 300.00113 * 27 25 24 49 49 H 1.09006 * 109.46942 * 60.00524 * 27 25 24 50 50 H 1.08998 * 109.47077 * 179.97438 * 27 25 24 51 51 H 1.09011 * 109.47155 * 59.99772 * 28 2 1 52 52 H 1.09000 * 109.47240 * 299.99988 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 1 3.9336 0.3058 1.2486 7 7 4.0597 -1.4148 2.4478 8 6 5.5251 -1.5174 2.4351 9 6 6.1254 -0.1351 2.4303 10 1 5.4867 0.7312 2.5194 11 6 7.4899 0.0235 2.3124 12 7 8.2676 -1.0315 2.2036 13 14 8.2340 1.7369 2.3072 14 1 7.9016 2.4248 3.5805 15 1 9.7090 1.6355 2.1692 16 1 7.6827 2.5125 1.1670 17 6 3.5892 -0.7490 3.6699 18 6 3.8530 -1.6365 4.8589 19 6 4.9989 -1.4667 5.6212 20 6 5.2003 -2.3066 6.7056 21 6 4.2592 -3.2787 6.9887 22 7 3.1813 -3.4119 6.2410 23 6 2.9544 -2.6275 5.2052 24 6 4.0795 -1.4433 -0.0005 25 6 3.5694 -0.7220 -1.2497 26 6 4.0784 -1.4439 -2.4990 27 6 4.0798 0.7203 -1.2499 28 6 2.0399 -0.7212 -1.2493 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6767 -0.2075 2.1391 33 1 1.6767 -1.7490 1.2491 34 1 5.8594 -2.0556 3.3220 35 1 5.8439 -2.0551 1.5421 36 1 9.2275 -0.9199 2.1202 37 1 4.1193 0.1950 3.7963 38 1 2.5193 -0.5570 3.5900 39 1 5.7173 -0.6985 5.3760 40 1 6.0817 -2.2032 7.3211 41 1 4.4085 -3.9367 7.8320 42 1 2.0577 -2.7635 4.6191 43 1 3.7158 -2.4708 -0.0003 44 1 5.1695 -1.4441 -0.0006 45 1 3.7154 -0.9298 -3.3889 46 1 5.1684 -1.4446 -2.4995 47 1 3.7144 -2.4713 -2.4986 48 1 3.7169 1.2343 -0.3600 49 1 5.1699 0.7199 -1.2502 50 1 3.7169 1.2340 -2.1401 51 1 1.6765 -0.2073 -2.1393 52 1 1.6766 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092868650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:27 Heat of formation + Delta-G solvation = 11.357988 kcal Electronic energy + Delta-G solvation = -28418.806323 eV Core-core repulsion = 24995.930878 eV Total energy + Delta-G solvation = -3422.875444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.92954 -39.37999 -36.37560 -33.80371 -32.63896 -32.21266 -31.24338 -29.34264 -27.36916 -26.99412 -26.38701 -25.63554 -24.67118 -23.03083 -22.54849 -21.22777 -20.11084 -19.29059 -18.10660 -16.63029 -16.29985 -15.87334 -15.37092 -14.84443 -14.70072 -14.65262 -14.19457 -14.09970 -13.64900 -13.36595 -13.04230 -12.91643 -12.81884 -12.48355 -12.41680 -12.39773 -12.20438 -11.88180 -11.58530 -11.53618 -11.49876 -11.18672 -11.07126 -11.00059 -10.68931 -10.53668 -10.41268 -10.35573 -10.23580 -10.11292 -9.88087 -9.77640 -9.52070 -9.31605 -9.15424 -8.98290 -8.45969 -8.43909 -7.16380 -6.06100 -4.15252 1.60426 1.82458 3.22399 3.28964 3.30831 4.26318 4.35311 4.82286 4.88914 4.91517 5.02264 5.23577 5.26538 5.30027 5.31128 5.46824 5.53338 5.54617 5.62093 5.65566 5.75045 5.78880 5.81279 5.87780 5.91519 5.98271 6.02613 6.07533 6.11505 6.16181 6.18376 6.21355 6.25158 6.28514 6.37671 6.43335 6.46550 6.51842 6.65602 6.65915 6.67889 6.71681 6.79630 6.94916 7.04139 7.10614 7.19544 7.29529 7.52688 7.88618 8.04884 8.26425 8.28139 8.41463 8.95266 9.51117 10.98132 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009090 B = 0.006016 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.441355 B = 4653.172566 C = 6851.916462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.110 4.110 5 C 0.097 3.903 6 H 0.050 0.950 7 N -0.533 5.533 8 C 0.184 3.816 9 C -0.544 4.544 10 H 0.054 0.946 11 C 0.069 3.931 12 N -0.888 5.888 13 Si 0.880 3.120 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.094 3.906 18 C -0.104 4.104 19 C -0.053 4.053 20 C -0.178 4.178 21 C 0.081 3.919 22 N -0.496 5.496 23 C 0.106 3.894 24 C -0.095 4.095 25 C -0.062 4.062 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.098 4.098 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.042 0.958 51 H 0.053 0.947 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.993 0.846 -1.725 11.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.012 4.012 6 H 0.068 0.932 7 N -0.256 5.256 8 C 0.059 3.941 9 C -0.583 4.583 10 H 0.072 0.928 11 C -0.134 4.134 12 N -0.526 5.526 13 Si 0.708 3.292 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.035 4.035 18 C -0.106 4.106 19 C -0.080 4.080 20 C -0.198 4.198 21 C -0.077 4.077 22 N -0.205 5.205 23 C -0.051 4.051 24 C -0.133 4.133 25 C -0.063 4.063 26 C -0.196 4.196 27 C -0.198 4.198 28 C -0.136 4.136 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.071 0.929 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.591 -0.358 -1.550 11.700 hybrid contribution 1.775 2.445 -0.217 3.029 sum -9.816 2.086 -1.767 10.190 Atomic orbital electron populations 1.21812 0.95890 1.01435 1.01002 1.21158 0.94600 0.99948 0.95463 0.91257 1.21758 0.96293 1.00431 0.96285 1.21375 0.92293 0.97115 0.90377 0.93193 1.62576 1.14503 1.49204 0.99330 1.19818 0.80370 0.95853 0.98092 1.21618 0.92105 0.93442 1.51124 0.92770 1.24893 0.97292 0.96085 0.95088 1.69928 1.04559 1.28643 1.49460 0.86851 0.78301 0.85444 0.78616 1.20372 1.21286 1.20258 1.20913 0.99287 0.94888 0.88395 1.20847 0.95036 0.97878 0.96872 1.21729 0.95911 0.97967 0.92343 1.22080 1.00703 0.97749 0.99219 1.22551 0.90318 0.96549 0.98238 1.67617 1.21131 1.25745 1.05977 1.22511 0.98841 0.90732 0.93046 1.21587 1.01939 0.98039 0.91737 1.20497 0.94496 0.95765 0.95499 1.21831 1.01232 0.99749 0.96740 1.21929 1.01467 0.95538 1.00864 1.21611 0.94965 1.00121 0.96862 0.92914 0.93056 0.93249 0.92585 0.91811 0.95441 0.94327 0.92812 0.92917 0.91398 0.84264 0.85526 0.83712 0.83446 0.92544 0.90279 0.93400 0.92580 0.93039 0.92118 0.92430 0.93886 0.92854 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 2 C -0.09 -1.17 2.45 -90.62 -0.22 -1.39 16 3 H 0.07 0.92 6.43 -51.92 -0.33 0.58 16 4 C -0.11 -1.59 4.29 -26.73 -0.11 -1.70 16 5 C 0.10 1.70 1.31 -67.72 -0.09 1.61 16 6 H 0.05 0.99 5.07 -51.93 -0.26 0.72 16 7 N -0.53 -10.43 4.55 -229.52 -1.05 -11.48 16 8 C 0.18 4.37 4.43 -4.97 -0.02 4.35 16 9 C -0.54 -13.63 7.53 -34.44 -0.26 -13.88 16 10 H 0.05 1.36 5.87 -52.49 -0.31 1.05 16 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 13 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C 0.09 1.68 4.79 -4.98 -0.02 1.66 16 18 C -0.10 -1.86 4.79 -104.48 -0.50 -2.36 16 19 C -0.05 -0.96 8.54 -39.27 -0.34 -1.29 16 20 C -0.18 -2.82 10.11 -39.44 -0.40 -3.22 16 21 C 0.08 1.25 11.18 -17.54 -0.20 1.05 16 22 N -0.50 -8.52 10.36 -13.25 -0.14 -8.66 16 23 C 0.11 1.79 10.88 -17.55 -0.19 1.60 16 24 C -0.10 -1.66 3.65 -26.73 -0.10 -1.76 16 25 C -0.06 -0.90 0.77 -154.54 -0.12 -1.02 16 26 C -0.14 -1.84 8.47 37.16 0.31 -1.53 16 27 C -0.14 -2.12 7.78 37.16 0.29 -1.83 16 28 C -0.10 -1.24 4.01 -26.76 -0.11 -1.35 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.79 6.16 -51.93 -0.32 0.47 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.03 0.72 6.36 -51.93 -0.33 0.39 16 35 H 0.04 1.01 6.15 -51.93 -0.32 0.69 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.05 1.04 6.25 -51.93 -0.32 0.72 16 38 H 0.07 1.07 5.73 -51.93 -0.30 0.77 16 39 H 0.14 2.70 8.06 -52.49 -0.42 2.28 16 40 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.66 6.31 -51.93 -0.33 1.33 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.95 4.81 -51.93 -0.25 0.70 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 52 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -27.19 386.09 -10.45 -37.65 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.97 Total: 5.83 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.83 Total: -20.53 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.45 Total: -44.22 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.19 -10.45 -37.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092868650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.003 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds