Wall clock time and date at job start Tue Mar 31 2020 11:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46993 * 2 1 4 4 C 1.52999 * 109.47269 * 120.00233 * 2 1 3 5 5 C 1.52998 * 109.46797 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47149 * 60.00374 * 5 4 2 7 7 N 1.46899 * 109.46978 * 180.02562 * 5 4 2 8 8 C 1.46905 * 111.00407 * 176.04601 * 7 5 4 9 9 C 1.50705 * 109.46816 * 61.35005 * 8 7 5 10 10 H 1.07998 * 119.99909 * 5.10532 * 9 8 7 11 11 C 1.37875 * 119.99739 * 185.10061 * 9 8 7 12 12 N 1.31519 * 120.00181 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99843 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47074 * 59.99901 * 13 11 9 15 15 H 1.48495 * 109.47073 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46999 * 300.00067 * 13 11 9 17 17 C 1.46904 * 111.00187 * 300.00300 * 7 5 4 18 18 C 1.50693 * 109.47447 * 167.94501 * 17 7 5 19 19 C 1.38674 * 120.41838 * 95.59805 * 18 17 7 20 20 C 1.38634 * 118.42019 * 180.02562 * 19 18 17 21 21 C 1.38227 * 119.16162 * 0.02562 * 20 19 18 22 22 N 1.31859 * 120.76391 * 0.02562 * 21 20 19 23 23 C 1.31893 * 121.72510 * 359.69810 * 22 21 20 24 24 C 1.52997 * 109.47459 * 300.00006 * 5 4 2 25 25 C 1.52999 * 109.47121 * 60.00192 * 24 5 4 26 26 C 1.52996 * 109.47317 * 180.02562 * 25 24 5 27 27 C 1.52996 * 109.47118 * 59.99877 * 25 24 5 28 28 C 1.52997 * 109.47042 * 240.00273 * 2 1 3 29 29 H 1.08995 * 109.47321 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47344 * 299.99510 * 1 2 3 31 31 H 1.09000 * 109.47705 * 59.99535 * 1 2 3 32 32 H 1.08993 * 109.47030 * 299.99718 * 4 2 1 33 33 H 1.09000 * 109.46966 * 60.00040 * 4 2 1 34 34 H 1.08993 * 109.47387 * 181.35193 * 8 7 5 35 35 H 1.09001 * 109.46901 * 301.35234 * 8 7 5 36 36 H 0.96995 * 120.00125 * 179.97438 * 12 11 9 37 37 H 1.09004 * 109.46524 * 287.94522 * 17 7 5 38 38 H 1.08994 * 109.47105 * 47.93892 * 17 7 5 39 39 H 1.07998 * 120.79385 * 0.02997 * 19 18 17 40 40 H 1.07996 * 120.42196 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.61989 * 180.02562 * 21 20 19 42 42 H 1.07991 * 119.61608 * 180.31550 * 23 22 21 43 43 H 1.09000 * 109.47240 * 300.00312 * 24 5 4 44 44 H 1.09005 * 109.47456 * 180.02562 * 24 5 4 45 45 H 1.08998 * 109.47551 * 180.02562 * 26 25 24 46 46 H 1.09006 * 109.47167 * 299.99735 * 26 25 24 47 47 H 1.09000 * 109.47417 * 59.99891 * 26 25 24 48 48 H 1.08993 * 109.47494 * 300.00113 * 27 25 24 49 49 H 1.09006 * 109.46942 * 60.00524 * 27 25 24 50 50 H 1.08998 * 109.47077 * 179.97438 * 27 25 24 51 51 H 1.09011 * 109.47155 * 59.99772 * 28 2 1 52 52 H 1.09000 * 109.47240 * 299.99988 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 1 3.9336 0.3058 1.2486 7 7 4.0597 -1.4148 2.4478 8 6 5.5251 -1.5174 2.4351 9 6 6.1254 -0.1351 2.4303 10 1 5.4867 0.7312 2.5194 11 6 7.4899 0.0235 2.3124 12 7 8.2676 -1.0315 2.2036 13 14 8.2340 1.7369 2.3072 14 1 7.9016 2.4248 3.5805 15 1 9.7090 1.6355 2.1692 16 1 7.6827 2.5125 1.1670 17 6 3.5892 -0.7490 3.6699 18 6 3.8530 -1.6365 4.8589 19 6 4.9989 -1.4667 5.6212 20 6 5.2003 -2.3066 6.7056 21 6 4.2592 -3.2787 6.9887 22 7 3.1813 -3.4119 6.2410 23 6 2.9544 -2.6275 5.2052 24 6 4.0795 -1.4433 -0.0005 25 6 3.5694 -0.7220 -1.2497 26 6 4.0784 -1.4439 -2.4990 27 6 4.0798 0.7203 -1.2499 28 6 2.0399 -0.7212 -1.2493 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6767 -0.2075 2.1391 33 1 1.6767 -1.7490 1.2491 34 1 5.8594 -2.0556 3.3220 35 1 5.8439 -2.0551 1.5421 36 1 9.2275 -0.9199 2.1202 37 1 4.1193 0.1950 3.7963 38 1 2.5193 -0.5570 3.5900 39 1 5.7173 -0.6985 5.3760 40 1 6.0817 -2.2032 7.3211 41 1 4.4085 -3.9367 7.8320 42 1 2.0577 -2.7635 4.6191 43 1 3.7158 -2.4708 -0.0003 44 1 5.1695 -1.4441 -0.0006 45 1 3.7154 -0.9298 -3.3889 46 1 5.1684 -1.4446 -2.4995 47 1 3.7144 -2.4713 -2.4986 48 1 3.7169 1.2343 -0.3600 49 1 5.1699 0.7199 -1.2502 50 1 3.7169 1.2340 -2.1401 51 1 1.6765 -0.2073 -2.1393 52 1 1.6766 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092868650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:26 Heat of formation + Delta-G solvation = -2.138744 kcal Electronic energy + Delta-G solvation = -28419.391585 eV Core-core repulsion = 24995.930878 eV Total energy + Delta-G solvation = -3423.460706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28308 -40.65282 -37.88359 -34.99795 -34.51015 -33.60944 -32.56965 -30.84106 -29.00301 -28.20122 -27.37125 -27.11909 -26.18552 -24.45010 -24.16732 -22.59050 -21.20544 -20.87247 -19.40858 -18.32572 -17.82334 -17.28103 -16.76165 -16.63570 -16.10246 -15.92791 -15.50337 -15.43602 -14.98598 -14.66010 -14.47385 -14.31661 -14.17078 -14.05967 -13.84395 -13.47691 -13.36565 -13.17918 -13.00073 -12.90092 -12.83090 -12.73327 -12.59349 -12.39450 -12.21764 -11.98064 -11.90086 -11.78417 -11.72986 -11.54004 -11.49969 -11.08260 -10.83147 -10.68904 -10.53530 -10.50467 -10.32872 -9.78602 -8.90588 -8.10127 -6.27765 0.29667 0.44912 1.33286 1.34759 1.41230 2.36447 2.91887 3.14510 3.44051 3.66339 3.80557 3.84951 4.00732 4.04798 4.11917 4.19378 4.24318 4.28326 4.39864 4.44680 4.48381 4.56026 4.64349 4.71471 4.78001 4.82002 4.85722 4.90502 4.92176 4.96211 5.00003 5.02771 5.06418 5.11507 5.20543 5.23207 5.25000 5.30092 5.33695 5.36499 5.39309 5.44468 5.48126 5.54341 5.56072 5.60109 5.67222 5.77881 5.83682 5.89351 6.13668 6.34722 6.63965 6.93454 7.10314 7.42203 8.90720 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009090 B = 0.006016 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.441355 B = 4653.172566 C = 6851.916462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.064 0.936 4 C -0.101 4.101 5 C 0.098 3.902 6 H 0.026 0.974 7 N -0.532 5.532 8 C 0.206 3.794 9 C -0.534 4.534 10 H 0.052 0.948 11 C 0.020 3.980 12 N -0.924 5.924 13 Si 0.938 3.062 14 H -0.270 1.270 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.100 3.900 18 C -0.120 4.120 19 C -0.074 4.074 20 C -0.177 4.177 21 C 0.084 3.916 22 N -0.508 5.508 23 C 0.105 3.895 24 C -0.088 4.088 25 C -0.060 4.060 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.092 4.092 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.000 1.000 35 H 0.007 0.993 36 H 0.261 0.739 37 H 0.030 0.970 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.150 0.850 41 H 0.182 0.818 42 H 0.166 0.834 43 H 0.052 0.948 44 H 0.032 0.968 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.058 0.942 48 H 0.052 0.948 49 H 0.027 0.973 50 H 0.068 0.932 51 H 0.075 0.925 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 1.291 -1.881 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.082 0.918 4 C -0.138 4.138 5 C -0.010 4.010 6 H 0.044 0.956 7 N -0.255 5.255 8 C 0.080 3.920 9 C -0.574 4.574 10 H 0.070 0.930 11 C -0.179 4.179 12 N -0.564 5.564 13 Si 0.764 3.236 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.028 4.028 18 C -0.122 4.122 19 C -0.101 4.101 20 C -0.196 4.196 21 C -0.073 4.073 22 N -0.217 5.217 23 C -0.052 4.052 24 C -0.126 4.126 25 C -0.060 4.060 26 C -0.193 4.193 27 C -0.194 4.194 28 C -0.129 4.129 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.018 0.982 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.168 0.832 41 H 0.199 0.801 42 H 0.183 0.817 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.087 0.913 51 H 0.093 0.907 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.161 0.100 -1.705 14.264 hybrid contribution 2.583 2.260 -0.120 3.434 sum -11.578 2.360 -1.825 11.957 Atomic orbital electron populations 1.21752 0.93661 1.02118 1.02012 1.21141 0.96335 0.99216 0.94218 0.91756 1.21685 0.93090 1.01075 0.97976 1.21434 0.94815 0.95302 0.89418 0.95581 1.62526 1.11682 1.50223 1.01032 1.19346 0.83148 0.94452 0.95084 1.21773 0.92101 0.93921 1.49555 0.92966 1.25595 0.97904 0.99300 0.95095 1.70055 1.04628 1.30593 1.51100 0.85922 0.77381 0.81480 0.78844 1.19553 1.21227 1.19835 1.20896 1.00393 0.93748 0.87746 1.20864 0.95596 0.98739 0.96990 1.21706 0.95939 0.98519 0.93925 1.22345 1.01683 0.97072 0.98549 1.23142 0.89259 0.96315 0.98556 1.67698 1.21916 1.25823 1.06244 1.22737 0.99106 0.90132 0.93205 1.21481 0.98963 0.98426 0.93718 1.20493 0.96347 0.94935 0.94271 1.21809 1.00059 1.00400 0.97033 1.21890 0.99564 0.96255 1.01702 1.21573 0.92675 1.00861 0.97805 0.92379 0.92577 0.91812 0.91896 0.91541 0.98151 0.97519 0.92996 0.95185 0.88651 0.86673 0.83179 0.80059 0.81664 0.92905 0.94952 0.91065 0.94516 0.92324 0.92926 0.95353 0.91300 0.90657 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.19 71.98 0.66 -1.77 16 2 C -0.09 -2.05 2.45 -10.80 -0.03 -2.08 16 3 H 0.06 1.56 6.43 -2.38 -0.02 1.54 16 4 C -0.10 -2.76 4.29 30.59 0.13 -2.63 16 5 C 0.10 3.54 1.31 44.91 0.06 3.60 16 6 H 0.03 1.07 5.07 -2.39 -0.01 1.06 16 7 N -0.53 -21.58 4.55 -880.06 -4.01 -25.59 16 8 C 0.21 10.42 4.43 85.56 0.38 10.80 16 9 C -0.53 -28.16 7.53 25.60 0.19 -27.97 16 10 H 0.05 2.73 5.87 -2.91 -0.02 2.72 16 11 C 0.02 1.12 5.46 84.65 0.46 1.58 16 12 N -0.92 -54.08 13.29 21.45 0.28 -53.80 16 13 Si 0.94 43.26 29.54 68.60 2.03 45.28 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 C 0.10 3.67 4.79 85.55 0.41 4.08 16 18 C -0.12 -4.32 4.79 -19.77 -0.09 -4.41 16 19 C -0.07 -2.76 8.54 22.47 0.19 -2.57 16 20 C -0.18 -5.49 10.11 22.36 0.23 -5.26 16 21 C 0.08 2.44 11.18 84.69 0.95 3.39 16 22 N -0.51 -16.63 10.36 -195.84 -2.03 -18.66 16 23 C 0.10 3.46 10.88 84.67 0.92 4.38 16 24 C -0.09 -3.20 3.65 30.59 0.11 -3.08 16 25 C -0.06 -1.70 0.77 -52.20 -0.04 -1.74 16 26 C -0.14 -3.52 8.47 71.98 0.61 -2.91 16 27 C -0.14 -4.11 7.78 71.98 0.56 -3.55 16 28 C -0.09 -2.07 4.01 30.58 0.12 -1.95 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.64 6.16 -2.39 -0.01 1.63 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.00 0.02 6.36 -2.39 -0.02 0.01 16 35 H 0.01 0.38 6.15 -2.39 -0.01 0.37 16 36 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.03 1.23 6.25 -2.38 -0.01 1.22 16 38 H 0.10 2.92 5.73 -2.39 -0.01 2.91 16 39 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 41 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.17 4.71 8.06 -2.92 -0.02 4.69 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.03 1.46 6.31 -2.38 -0.02 1.44 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.05 1.64 4.81 -2.39 -0.01 1.63 16 49 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 52 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -61.88 386.09 2.98 -58.90 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.88 Total: 25.95 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 5.82 Total: -32.09 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -5.75 Total: -98.04 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -61.88 2.98 -58.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092868650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.766 kcal (2) G-P(sol) polarization free energy of solvation -61.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds