Wall clock time and date at job start Tue Mar 31 2020 11:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47360 * 2 1 4 4 C 1.53000 * 109.47234 * 120.00359 * 2 1 3 5 5 C 1.52999 * 109.47234 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47234 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47456 * 59.99656 * 6 5 4 8 8 N 1.46896 * 109.47685 * 180.02562 * 7 6 5 9 9 C 1.46895 * 111.00264 * 193.17147 * 8 7 6 10 10 C 1.50701 * 109.46978 * 71.69725 * 9 8 7 11 11 H 1.08001 * 119.99896 * 5.12763 * 10 9 8 12 12 C 1.37877 * 120.00353 * 185.13000 * 10 9 8 13 13 N 1.31510 * 119.99729 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00339 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47074 * 89.99536 * 14 12 10 16 16 H 1.48493 * 109.47240 * 209.99997 * 14 12 10 17 17 H 1.48502 * 109.46956 * 329.99837 * 14 12 10 18 18 C 1.46904 * 110.99618 * 69.21816 * 8 7 6 19 19 C 1.50703 * 109.47148 * 189.99909 * 18 8 7 20 20 C 1.38670 * 120.42199 * 269.73038 * 19 18 8 21 21 C 1.38629 * 118.42367 * 179.78362 * 20 19 18 22 22 C 1.38231 * 119.15458 * 0.50897 * 21 20 19 23 23 N 1.31854 * 120.76624 * 359.72157 * 22 21 20 24 24 C 1.31880 * 121.72618 * 0.02562 * 23 22 21 25 25 C 1.53008 * 109.47274 * 300.00420 * 7 6 5 26 26 C 1.53001 * 109.47215 * 59.99942 * 4 2 1 27 27 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47018 * 299.99896 * 1 2 3 29 29 H 1.08996 * 109.46898 * 60.00004 * 1 2 3 30 30 H 1.09000 * 109.47018 * 240.00104 * 2 1 3 31 31 H 1.09000 * 109.47527 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47645 * 300.00391 * 3 2 1 33 33 H 1.09000 * 109.46970 * 60.00074 * 3 2 1 34 34 H 1.09000 * 109.46909 * 299.99811 * 4 2 1 35 35 H 1.09000 * 109.47018 * 299.99744 * 5 4 2 36 36 H 1.08997 * 109.47072 * 59.99647 * 5 4 2 37 37 H 1.09000 * 109.46909 * 299.99811 * 6 5 4 38 38 H 1.09002 * 109.47445 * 179.97438 * 6 5 4 39 39 H 1.09010 * 109.46902 * 60.00061 * 7 6 5 40 40 H 1.09006 * 109.47125 * 191.68833 * 9 8 7 41 41 H 1.08990 * 109.47532 * 311.69695 * 9 8 7 42 42 H 0.97006 * 120.00470 * 180.02562 * 13 12 10 43 43 H 1.08990 * 109.47392 * 310.00439 * 18 8 7 44 44 H 1.09003 * 109.46841 * 70.00446 * 18 8 7 45 45 H 1.07999 * 120.78848 * 0.02562 * 20 19 18 46 46 H 1.07997 * 120.42587 * 180.21361 * 21 20 19 47 47 H 1.07999 * 119.61561 * 179.75184 * 22 21 20 48 48 H 1.08001 * 119.61681 * 179.97438 * 24 23 22 49 49 H 1.09000 * 109.46935 * 299.99750 * 25 7 6 50 50 H 1.09000 * 109.47008 * 179.97438 * 25 7 6 51 51 H 1.09000 * 109.47233 * 300.00015 * 26 4 2 52 52 H 1.09000 * 109.47289 * 60.00102 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0800 -1.4426 2.4984 7 6 3.5695 -2.8849 2.4994 8 7 4.0586 -3.5768 3.6993 9 6 3.8592 -5.0279 3.5884 10 6 4.8260 -5.5922 2.5795 11 1 5.5740 -4.9539 2.1327 12 6 4.7557 -6.9232 2.2266 13 7 3.8452 -7.7005 2.7709 14 14 5.9536 -7.6224 0.9754 15 1 7.1616 -8.1281 1.6756 16 1 5.3055 -8.7369 0.2386 17 1 6.3462 -6.5578 0.0173 18 6 3.4165 -3.0482 4.9103 19 6 4.1110 -3.5997 6.1287 20 6 3.6795 -4.7838 6.7072 21 6 4.3514 -5.2557 7.8242 22 6 5.4149 -4.5298 8.3270 23 7 5.7947 -3.4048 7.7536 24 6 5.1822 -2.9287 6.6871 25 6 2.0394 -2.8844 2.4997 26 6 1.5300 -2.1638 1.2491 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 -0.2075 2.1392 35 1 3.9329 -1.2360 0.3589 36 1 3.9337 0.3056 1.2486 37 1 3.7171 -0.9282 3.3881 38 1 5.1701 -1.4435 2.4980 39 1 3.9325 -3.3995 1.6095 40 1 4.0334 -5.4938 4.5584 41 1 2.8381 -5.2308 3.2660 42 1 3.7959 -8.6370 2.5230 43 1 3.4864 -1.9605 4.9133 44 1 2.3678 -3.3449 4.9244 45 1 2.8424 -5.3275 6.2949 46 1 4.0448 -6.1763 8.2985 47 1 5.9410 -4.8884 9.1993 48 1 5.5217 -2.0036 6.2451 49 1 1.6765 -2.3699 3.3895 50 1 1.6757 -3.9119 2.5000 51 1 0.4400 -2.1639 1.2492 52 1 1.8933 -2.6777 0.3591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092868663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:02 Heat of formation + Delta-G solvation = 7.588120 kcal Electronic energy + Delta-G solvation = -27630.714582 eV Core-core repulsion = 24207.675664 eV Total energy + Delta-G solvation = -3423.038918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95046 -39.20371 -36.84162 -33.85135 -32.75180 -31.80812 -31.06470 -30.59946 -28.24266 -27.17431 -27.14829 -24.75185 -23.33451 -22.68040 -22.06389 -21.82551 -20.68558 -19.60807 -18.72819 -16.68712 -16.37437 -15.82916 -15.65537 -15.37208 -14.60464 -14.45110 -14.28462 -14.00600 -13.65966 -13.57024 -13.40671 -13.19651 -12.84421 -12.78094 -12.60789 -12.48959 -12.27760 -12.13895 -11.98465 -11.68126 -11.36218 -11.14421 -11.08014 -10.98618 -10.89710 -10.79259 -10.65321 -10.43072 -10.34169 -10.14703 -9.96168 -9.70294 -9.52539 -9.30414 -9.20374 -9.00942 -8.53580 -8.40735 -7.19309 -6.02829 -4.02494 1.53533 1.72457 3.31427 3.37671 3.41139 4.18177 4.43701 4.69364 4.81963 4.82086 4.89429 5.02735 5.11659 5.19407 5.29751 5.33053 5.40157 5.42793 5.48146 5.52966 5.56264 5.57751 5.63631 5.68205 5.72732 5.78364 5.82009 5.88909 5.93499 5.98164 6.03222 6.04369 6.13914 6.16393 6.17114 6.21626 6.25553 6.40466 6.42497 6.47394 6.54210 6.56790 6.62585 6.74395 6.82101 6.93002 7.11135 7.29630 7.38707 7.82406 8.10965 8.19693 8.35649 8.54562 9.05230 9.61207 11.07654 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.004721 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.945242 B = 5929.238766 C = 8128.036158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.079 4.079 5 C -0.113 4.113 6 C -0.109 4.109 7 C 0.096 3.904 8 N -0.525 5.525 9 C 0.185 3.815 10 C -0.501 4.501 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.092 3.908 19 C -0.109 4.109 20 C -0.059 4.059 21 C -0.174 4.174 22 C 0.084 3.916 23 N -0.493 5.493 24 C 0.110 3.890 25 C -0.150 4.150 26 C -0.109 4.109 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.033 0.967 41 H -0.001 1.001 42 H 0.260 0.740 43 H 0.073 0.927 44 H 0.035 0.965 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.148 0.852 48 H 0.150 0.850 49 H 0.054 0.946 50 H 0.066 0.934 51 H 0.056 0.944 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 13.582 1.245 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.098 4.098 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.013 4.013 8 N -0.247 5.247 9 C 0.060 3.940 10 C -0.539 4.539 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.037 4.037 19 C -0.111 4.111 20 C -0.085 4.085 21 C -0.194 4.194 22 C -0.073 4.073 23 N -0.201 5.201 24 C -0.047 4.047 25 C -0.189 4.189 26 C -0.147 4.147 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.050 0.950 41 H 0.016 0.984 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.165 0.835 48 H 0.167 0.833 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.383 13.934 1.634 14.698 hybrid contribution -0.997 -1.415 -1.128 2.066 sum -5.380 12.519 0.506 13.636 Atomic orbital electron populations 1.21892 0.95685 1.01860 1.01144 1.21153 0.95406 0.95943 0.98664 1.21888 1.01303 0.96158 1.01168 1.21196 0.95640 0.95792 0.97132 1.21620 0.94756 0.99882 0.98823 1.21592 1.00851 0.95452 0.96843 1.21595 0.91126 0.93511 0.95067 1.62365 1.55656 1.07558 0.99154 1.19876 0.95759 0.80649 0.97680 1.21139 1.15652 0.94145 1.23007 0.92045 1.24942 0.95759 0.97086 0.96681 1.69942 1.34271 1.05978 1.43753 0.86575 0.81178 0.78670 0.81473 1.20727 1.21386 1.19870 1.20972 0.94994 0.98754 0.88933 1.20824 0.97480 0.95837 0.96979 1.21557 0.99033 0.94283 0.93634 1.22051 0.98101 1.01204 0.98015 1.22582 0.94578 0.91185 0.98927 1.67621 1.28991 1.13454 1.10053 1.22499 0.91440 0.99289 0.91450 1.22225 0.98625 1.00675 0.97355 1.21568 0.99602 0.94808 0.98717 0.92297 0.92973 0.93256 0.91358 0.92313 0.93268 0.92961 0.91708 0.92039 0.92233 0.92795 0.91537 0.89046 0.94955 0.98364 0.93064 0.90837 0.94650 0.85066 0.85325 0.83503 0.83276 0.92732 0.91503 0.92521 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.84 37.16 0.33 -1.08 16 2 C -0.09 -0.95 2.51 -90.63 -0.23 -1.18 16 3 C -0.15 -1.35 8.84 37.15 0.33 -1.02 16 4 C -0.08 -0.92 1.78 -90.62 -0.16 -1.08 16 5 C -0.11 -1.40 4.85 -26.73 -0.13 -1.53 16 6 C -0.11 -1.59 5.21 -26.73 -0.14 -1.73 16 7 C 0.10 1.69 2.07 -67.71 -0.14 1.55 16 8 N -0.52 -10.46 4.37 -229.52 -1.00 -11.46 16 9 C 0.19 4.54 4.48 -4.98 -0.02 4.52 16 10 C -0.50 -13.71 8.34 -34.44 -0.29 -14.00 16 11 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 14 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 18 C 0.09 1.55 3.98 -4.97 -0.02 1.53 16 19 C -0.11 -1.89 4.93 -104.48 -0.52 -2.40 16 20 C -0.06 -1.01 8.02 -39.28 -0.32 -1.33 16 21 C -0.17 -2.69 10.11 -39.44 -0.40 -3.09 16 22 C 0.08 1.30 11.18 -17.54 -0.20 1.10 16 23 N -0.49 -8.44 10.36 -13.25 -0.14 -8.58 16 24 C 0.11 1.86 10.86 -17.55 -0.19 1.67 16 25 C -0.15 -2.40 4.43 -26.70 -0.12 -2.52 16 26 C -0.11 -1.47 4.85 -26.70 -0.13 -1.60 16 27 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 37 H 0.05 0.74 6.48 -51.93 -0.34 0.40 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.89 7.15 -51.92 -0.37 1.52 16 40 H 0.03 0.85 5.20 -51.93 -0.27 0.58 16 41 H 0.00 -0.04 6.44 -51.93 -0.33 -0.37 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.07 1.09 6.20 -51.93 -0.32 0.77 16 44 H 0.04 0.60 6.78 -51.93 -0.35 0.25 16 45 H 0.13 2.28 7.78 -52.49 -0.41 1.87 16 46 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 47 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 48 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 49 H 0.05 0.82 6.53 -51.93 -0.34 0.48 16 50 H 0.07 1.25 6.64 -51.93 -0.34 0.91 16 51 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 52 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -29.40 388.05 -11.04 -40.44 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -9.03 Total: 3.24 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -2.43 Total: -20.71 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.40 Total: -45.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.40 -11.04 -40.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092868663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.023 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds