Wall clock time and date at job start Tue Mar 31 2020 11:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47360 * 2 1 4 4 C 1.53000 * 109.47234 * 120.00359 * 2 1 3 5 5 C 1.52999 * 109.47234 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47234 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47456 * 59.99656 * 6 5 4 8 8 N 1.46896 * 109.47685 * 180.02562 * 7 6 5 9 9 C 1.46895 * 111.00264 * 193.17147 * 8 7 6 10 10 C 1.50701 * 109.46978 * 71.69725 * 9 8 7 11 11 H 1.08001 * 119.99896 * 5.12763 * 10 9 8 12 12 C 1.37877 * 120.00353 * 185.13000 * 10 9 8 13 13 N 1.31510 * 119.99729 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00339 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47074 * 89.99536 * 14 12 10 16 16 H 1.48493 * 109.47240 * 209.99997 * 14 12 10 17 17 H 1.48502 * 109.46956 * 329.99837 * 14 12 10 18 18 C 1.46904 * 110.99618 * 69.21816 * 8 7 6 19 19 C 1.50703 * 109.47148 * 189.99909 * 18 8 7 20 20 C 1.38670 * 120.42199 * 269.73038 * 19 18 8 21 21 C 1.38629 * 118.42367 * 179.78362 * 20 19 18 22 22 C 1.38231 * 119.15458 * 0.50897 * 21 20 19 23 23 N 1.31854 * 120.76624 * 359.72157 * 22 21 20 24 24 C 1.31880 * 121.72618 * 0.02562 * 23 22 21 25 25 C 1.53008 * 109.47274 * 300.00420 * 7 6 5 26 26 C 1.53001 * 109.47215 * 59.99942 * 4 2 1 27 27 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47018 * 299.99896 * 1 2 3 29 29 H 1.08996 * 109.46898 * 60.00004 * 1 2 3 30 30 H 1.09000 * 109.47018 * 240.00104 * 2 1 3 31 31 H 1.09000 * 109.47527 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47645 * 300.00391 * 3 2 1 33 33 H 1.09000 * 109.46970 * 60.00074 * 3 2 1 34 34 H 1.09000 * 109.46909 * 299.99811 * 4 2 1 35 35 H 1.09000 * 109.47018 * 299.99744 * 5 4 2 36 36 H 1.08997 * 109.47072 * 59.99647 * 5 4 2 37 37 H 1.09000 * 109.46909 * 299.99811 * 6 5 4 38 38 H 1.09002 * 109.47445 * 179.97438 * 6 5 4 39 39 H 1.09010 * 109.46902 * 60.00061 * 7 6 5 40 40 H 1.09006 * 109.47125 * 191.68833 * 9 8 7 41 41 H 1.08990 * 109.47532 * 311.69695 * 9 8 7 42 42 H 0.97006 * 120.00470 * 180.02562 * 13 12 10 43 43 H 1.08990 * 109.47392 * 310.00439 * 18 8 7 44 44 H 1.09003 * 109.46841 * 70.00446 * 18 8 7 45 45 H 1.07999 * 120.78848 * 0.02562 * 20 19 18 46 46 H 1.07997 * 120.42587 * 180.21361 * 21 20 19 47 47 H 1.07999 * 119.61561 * 179.75184 * 22 21 20 48 48 H 1.08001 * 119.61681 * 179.97438 * 24 23 22 49 49 H 1.09000 * 109.46935 * 299.99750 * 25 7 6 50 50 H 1.09000 * 109.47008 * 179.97438 * 25 7 6 51 51 H 1.09000 * 109.47233 * 300.00015 * 26 4 2 52 52 H 1.09000 * 109.47289 * 60.00102 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0800 -1.4426 2.4984 7 6 3.5695 -2.8849 2.4994 8 7 4.0586 -3.5768 3.6993 9 6 3.8592 -5.0279 3.5884 10 6 4.8260 -5.5922 2.5795 11 1 5.5740 -4.9539 2.1327 12 6 4.7557 -6.9232 2.2266 13 7 3.8452 -7.7005 2.7709 14 14 5.9536 -7.6224 0.9754 15 1 7.1616 -8.1281 1.6756 16 1 5.3055 -8.7369 0.2386 17 1 6.3462 -6.5578 0.0173 18 6 3.4165 -3.0482 4.9103 19 6 4.1110 -3.5997 6.1287 20 6 3.6795 -4.7838 6.7072 21 6 4.3514 -5.2557 7.8242 22 6 5.4149 -4.5298 8.3270 23 7 5.7947 -3.4048 7.7536 24 6 5.1822 -2.9287 6.6871 25 6 2.0394 -2.8844 2.4997 26 6 1.5300 -2.1638 1.2491 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 -0.2075 2.1392 35 1 3.9329 -1.2360 0.3589 36 1 3.9337 0.3056 1.2486 37 1 3.7171 -0.9282 3.3881 38 1 5.1701 -1.4435 2.4980 39 1 3.9325 -3.3995 1.6095 40 1 4.0334 -5.4938 4.5584 41 1 2.8381 -5.2308 3.2660 42 1 3.7959 -8.6370 2.5230 43 1 3.4864 -1.9605 4.9133 44 1 2.3678 -3.3449 4.9244 45 1 2.8424 -5.3275 6.2949 46 1 4.0448 -6.1763 8.2985 47 1 5.9410 -4.8884 9.1993 48 1 5.5217 -2.0036 6.2451 49 1 1.6765 -2.3699 3.3895 50 1 1.6757 -3.9119 2.5000 51 1 0.4400 -2.1639 1.2492 52 1 1.8933 -2.6777 0.3591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092868663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:01 Heat of formation + Delta-G solvation = -7.437598 kcal Electronic energy + Delta-G solvation = -27631.366146 eV Core-core repulsion = 24207.675664 eV Total energy + Delta-G solvation = -3423.690482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26522 -40.40522 -38.10396 -35.14859 -34.63410 -33.14188 -32.41282 -31.76622 -29.80286 -28.65090 -27.92702 -26.35405 -24.75940 -24.10715 -23.26010 -23.14720 -22.00447 -20.53822 -20.12506 -18.44672 -17.88658 -17.23986 -17.01313 -16.76428 -16.31899 -15.64614 -15.41886 -15.14463 -15.03894 -14.84300 -14.58807 -14.40682 -14.20271 -14.09541 -13.93128 -13.81888 -13.67173 -13.24258 -13.21579 -12.97770 -12.77101 -12.59768 -12.51237 -12.28243 -12.24554 -12.04678 -11.97842 -11.86335 -11.71368 -11.45404 -11.28887 -11.14862 -10.82159 -10.73536 -10.66750 -10.48411 -10.35203 -9.83287 -8.84121 -8.18162 -6.25417 0.26402 0.40447 1.36823 1.37582 1.48041 2.38825 2.88473 3.14304 3.44138 3.63368 3.80742 3.84230 3.92428 3.94478 4.01004 4.14596 4.16089 4.19005 4.32833 4.43685 4.45753 4.50324 4.55607 4.61599 4.67442 4.70863 4.77341 4.81038 4.88783 4.91159 4.91939 4.94660 5.08259 5.08888 5.14060 5.18091 5.20315 5.25575 5.27142 5.29939 5.36671 5.39417 5.44681 5.46438 5.51745 5.56993 5.66046 5.70973 5.73400 5.85656 6.13920 6.45572 6.70278 6.91046 7.08206 7.42762 8.91374 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.004721 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.945242 B = 5929.238766 C = 8128.036158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.072 4.072 5 C -0.108 4.108 6 C -0.100 4.100 7 C 0.096 3.904 8 N -0.531 5.531 9 C 0.204 3.796 10 C -0.514 4.514 11 H 0.052 0.948 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.955 3.045 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.098 3.902 19 C -0.125 4.125 20 C -0.079 4.079 21 C -0.175 4.175 22 C 0.084 3.916 23 N -0.508 5.508 24 C 0.104 3.896 25 C -0.141 4.141 26 C -0.104 4.104 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.015 0.985 41 H -0.031 1.031 42 H 0.262 0.738 43 H 0.101 0.899 44 H 0.031 0.969 45 H 0.118 0.882 46 H 0.153 0.847 47 H 0.182 0.818 48 H 0.167 0.833 49 H 0.069 0.931 50 H 0.028 0.972 51 H 0.068 0.932 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 15.623 1.412 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.090 4.090 5 C -0.146 4.146 6 C -0.138 4.138 7 C -0.012 4.012 8 N -0.254 5.254 9 C 0.078 3.922 10 C -0.553 4.553 11 H 0.071 0.929 12 C -0.191 4.191 13 N -0.572 5.572 14 Si 0.780 3.220 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.030 4.030 19 C -0.127 4.127 20 C -0.105 4.105 21 C -0.195 4.195 22 C -0.073 4.073 23 N -0.217 5.217 24 C -0.052 4.052 25 C -0.180 4.180 26 C -0.142 4.142 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.033 0.967 41 H -0.013 1.013 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.049 0.951 45 H 0.136 0.864 46 H 0.171 0.829 47 H 0.199 0.801 48 H 0.184 0.816 49 H 0.087 0.913 50 H 0.047 0.953 51 H 0.087 0.913 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.938 15.998 1.796 16.573 hybrid contribution -1.151 -2.078 -1.124 2.628 sum -5.089 13.920 0.672 14.837 Atomic orbital electron populations 1.21882 0.95042 1.01595 1.01982 1.21115 0.95940 0.96584 0.97304 1.21863 1.01325 0.95092 1.01966 1.21139 0.95013 0.94314 0.98523 1.21603 0.95259 1.00667 0.97065 1.21514 1.00311 0.93123 0.98824 1.21580 0.92152 0.94928 0.92581 1.62277 1.56731 1.05127 1.01224 1.19457 0.93316 0.83667 0.95742 1.21432 1.15844 0.94441 1.23536 0.92930 1.25730 0.97394 0.97486 0.98527 1.70056 1.35777 1.06236 1.45097 0.85598 0.79040 0.78058 0.79259 1.20240 1.20742 1.19188 1.20996 0.94455 1.00073 0.87485 1.20900 0.98234 0.96287 0.97296 1.21666 0.99391 0.94706 0.94780 1.22357 0.97783 1.02023 0.97308 1.23165 0.94250 0.90400 0.99460 1.67685 1.29335 1.14314 1.10333 1.22765 0.91087 0.99873 0.91501 1.22099 0.97430 0.98994 0.99443 1.21537 1.00287 0.95902 0.96492 0.93121 0.92356 0.92238 0.92153 0.92245 0.92380 0.92316 0.90721 0.93164 0.89821 0.91083 0.92361 0.92954 0.96690 1.01334 0.92964 0.88083 0.95061 0.86356 0.82885 0.80083 0.81603 0.91271 0.95308 0.91330 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.84 71.98 0.64 -1.86 16 2 C -0.09 -1.67 2.51 -10.80 -0.03 -1.69 16 3 C -0.15 -2.21 8.84 71.98 0.64 -1.57 16 4 C -0.07 -1.54 1.78 -10.79 -0.02 -1.56 16 5 C -0.11 -2.49 4.85 30.59 0.15 -2.35 16 6 C -0.10 -2.79 5.21 30.59 0.16 -2.63 16 7 C 0.10 3.49 2.07 44.92 0.09 3.58 16 8 N -0.53 -21.81 4.37 -880.06 -3.85 -25.66 16 9 C 0.20 10.55 4.48 85.56 0.38 10.93 16 10 C -0.51 -29.24 8.34 25.60 0.21 -29.03 16 11 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 12 C 0.01 0.37 5.46 84.66 0.46 0.83 16 13 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 14 Si 0.95 45.15 29.54 68.60 2.03 47.17 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 C 0.10 3.32 3.98 85.56 0.34 3.66 16 19 C -0.12 -4.34 4.93 -19.77 -0.10 -4.44 16 20 C -0.08 -2.77 8.02 22.47 0.18 -2.59 16 21 C -0.18 -5.28 10.11 22.36 0.23 -5.06 16 22 C 0.08 2.44 11.18 84.69 0.95 3.39 16 23 N -0.51 -16.68 10.36 -195.84 -2.03 -18.71 16 24 C 0.10 3.42 10.86 84.67 0.92 4.34 16 25 C -0.14 -4.64 4.43 30.62 0.14 -4.51 16 26 C -0.10 -2.81 4.85 30.61 0.15 -2.66 16 27 H 0.05 0.93 6.43 -2.39 -0.02 0.91 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 0.90 6.43 -2.39 -0.02 0.88 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.58 6.43 -2.39 -0.02 1.57 16 37 H 0.07 1.75 6.48 -2.39 -0.02 1.74 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 2.30 7.15 -2.38 -0.02 2.28 16 40 H 0.02 0.83 5.20 -2.38 -0.01 0.82 16 41 H -0.03 -1.76 6.44 -2.39 -0.02 -1.77 16 42 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 43 H 0.10 2.83 6.20 -2.39 -0.01 2.82 16 44 H 0.03 1.09 6.78 -2.39 -0.02 1.07 16 45 H 0.12 4.37 7.78 -2.91 -0.02 4.35 16 46 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 47 H 0.18 3.86 8.06 -2.91 -0.02 3.83 16 48 H 0.17 4.69 8.06 -2.91 -0.02 4.66 16 49 H 0.07 2.06 6.53 -2.39 -0.02 2.04 16 50 H 0.03 1.15 6.64 -2.39 -0.02 1.13 16 51 H 0.07 1.69 6.43 -2.39 -0.02 1.67 16 52 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -65.46 388.05 2.80 -62.66 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.88 Total: 23.22 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 5.49 Total: -33.21 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -5.59 Total: -99.85 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.46 2.80 -62.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092868663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.225 kcal (2) G-P(sol) polarization free energy of solvation -65.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds