Wall clock time and date at job start Tue Mar 31 2020 11:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46885 * 2 1 4 4 C 1.46501 * 119.99713 * 269.99578 * 3 2 1 5 5 C 1.52997 * 109.47042 * 270.00222 * 4 3 2 6 6 C 1.39671 * 120.00085 * 89.99710 * 3 2 1 7 7 C 1.38915 * 120.07326 * 179.97438 * 6 3 2 8 8 C 1.38099 * 119.92409 * 180.02562 * 7 6 3 9 9 C 1.38282 * 120.07724 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.92960 * 179.97438 * 9 8 7 11 11 N 1.46896 * 109.47302 * 85.23045 * 10 9 8 12 12 C 1.46902 * 110.99669 * 75.22344 * 11 10 9 13 13 C 1.50697 * 109.47378 * 190.00122 * 12 11 10 14 14 H 1.08002 * 119.99519 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00406 * 179.72775 * 13 12 11 16 16 N 1.31515 * 119.99728 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00108 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47141 * 59.99665 * 17 15 13 19 19 H 1.48503 * 109.47385 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47432 * 299.99785 * 17 15 13 21 21 C 1.46895 * 111.00222 * 199.17709 * 11 10 9 22 22 C 1.52993 * 109.47267 * 65.96589 * 21 11 10 23 23 C 1.53005 * 117.50109 * 242.63510 * 22 21 11 24 24 C 1.53002 * 117.50230 * 174.01115 * 22 21 11 25 25 C 1.38289 * 120.15040 * 0.27683 * 9 8 7 26 26 C 1.38105 * 120.06926 * 359.44686 * 25 9 8 27 27 H 1.09002 * 109.47667 * 300.00447 * 1 2 3 28 28 H 1.09004 * 109.46794 * 60.00387 * 1 2 3 29 29 H 1.09004 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47293 * 239.99619 * 2 1 3 31 31 H 1.08997 * 109.47018 * 119.99303 * 2 1 3 32 32 H 1.08999 * 109.46950 * 30.00171 * 4 3 2 33 33 H 1.08998 * 109.47077 * 150.00450 * 4 3 2 34 34 H 1.09001 * 109.47053 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47206 * 299.99792 * 5 4 3 36 36 H 1.09003 * 109.47460 * 60.00187 * 5 4 3 37 37 H 1.08002 * 120.03365 * 0.05415 * 7 6 3 38 38 H 1.07998 * 119.96262 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.47165 * 325.23509 * 10 9 8 40 40 H 1.08996 * 109.47475 * 205.23838 * 10 9 8 41 41 H 1.09001 * 109.47088 * 70.00215 * 12 11 10 42 42 H 1.09001 * 109.47388 * 309.99914 * 12 11 10 43 43 H 0.96994 * 119.99867 * 180.02562 * 16 15 13 44 44 H 1.09007 * 109.47323 * 185.96947 * 21 11 10 45 45 H 1.09008 * 109.47414 * 305.96544 * 21 11 10 46 46 H 1.09005 * 115.54951 * 28.34297 * 22 21 11 47 47 H 1.08995 * 117.49377 * 359.97438 * 23 22 21 48 48 H 1.09000 * 117.49760 * 145.01653 * 23 22 21 49 49 H 1.08996 * 117.50121 * 214.98116 * 24 22 21 50 50 H 1.09003 * 117.49874 * 0.02562 * 24 22 21 51 51 H 1.07992 * 119.96518 * 179.70170 * 25 9 8 52 52 H 1.08006 * 120.03938 * 180.27881 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 6 2.2510 2.0397 1.2096 7 6 2.7145 3.3493 1.2113 8 6 2.9440 3.9972 2.4091 9 6 2.7136 3.3438 3.6058 10 6 2.9657 4.0538 4.9109 11 7 1.7799 4.8390 5.2782 12 6 0.7076 3.9695 5.7803 13 6 -0.5644 4.7664 5.9139 14 1 -0.5751 5.8142 5.6523 15 6 -1.7159 4.1568 6.3651 16 7 -1.7042 2.8796 6.6784 17 14 -3.2923 5.1449 6.5313 18 1 -3.6736 5.6954 5.2058 19 1 -4.3782 4.2641 7.0319 20 1 -3.0788 6.2606 7.4877 21 6 2.1193 5.8770 6.2607 22 6 3.0525 6.9038 5.6160 23 6 4.4563 7.0515 6.2064 24 6 3.4111 8.1451 6.4354 25 6 2.2581 2.0380 3.6077 26 6 2.0210 1.3861 2.4135 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.8891 2.3448 -2.6546 35 1 4.3883 2.2156 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 2.8947 3.8602 0.2770 38 1 3.3048 5.0152 2.4112 39 1 3.8227 4.7188 4.8031 40 1 3.1713 3.3199 5.6900 41 1 0.9899 3.5699 6.7543 42 1 0.5496 3.1474 5.0822 43 1 -2.5142 2.4506 6.9955 44 1 1.2081 6.3733 6.5945 45 1 2.6177 5.4193 7.1153 46 1 2.9440 7.0262 4.5383 47 1 4.7148 6.4174 7.0544 48 1 5.2716 7.2709 5.5171 49 1 3.5388 9.0841 5.8968 50 1 2.9825 8.2301 7.4340 51 1 2.0837 1.5290 4.5440 52 1 1.6610 0.3678 2.4156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091579.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:52 Heat of formation + Delta-G solvation = 55.829587 kcal Electronic energy + Delta-G solvation = -26884.086127 eV Core-core repulsion = 23463.139116 eV Total energy + Delta-G solvation = -3420.947011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.50301 -37.92781 -36.71026 -35.06859 -32.49885 -32.46768 -30.98409 -30.15192 -28.45628 -27.32312 -25.80739 -24.01261 -23.81353 -22.24181 -21.93614 -21.63902 -20.65737 -19.83124 -19.33552 -17.25744 -16.44146 -15.96152 -15.37175 -15.01996 -14.74675 -14.48998 -14.36952 -14.04187 -13.84767 -13.70623 -13.43937 -13.28250 -12.99552 -12.75021 -12.59244 -12.33849 -12.03261 -11.94604 -11.85184 -11.71923 -11.61101 -11.24835 -11.19039 -11.11936 -10.99249 -10.82076 -10.65262 -10.60596 -10.42853 -10.22218 -10.07482 -9.64512 -9.48507 -9.29135 -9.05049 -8.40089 -8.30754 -7.14575 -6.85645 -5.95121 -3.95043 1.98810 2.10221 3.24571 3.37657 3.41309 3.44835 4.15329 4.33244 4.50587 4.81954 4.91309 4.96166 5.08472 5.23655 5.24484 5.29607 5.32858 5.36993 5.40787 5.41186 5.47599 5.52978 5.54125 5.68111 5.71751 5.76925 5.83012 5.86435 5.89253 5.96402 6.01270 6.06422 6.14351 6.17189 6.20250 6.29929 6.34056 6.36305 6.38857 6.55986 6.59353 6.74264 6.87197 6.95037 7.33178 7.33529 7.44618 7.45846 7.53802 7.85126 7.89396 8.21496 8.33885 8.65954 9.12269 9.68215 11.15729 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.004172 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.579675 B = 6709.981716 C = 8920.650503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.123 3.877 3 N -0.633 5.633 4 C 0.122 3.878 5 C -0.171 4.171 6 C 0.207 3.793 7 C -0.201 4.201 8 C -0.054 4.054 9 C -0.111 4.111 10 C 0.097 3.903 11 N -0.528 5.528 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.093 3.907 22 C -0.134 4.134 23 C -0.191 4.191 24 C -0.184 4.184 25 C -0.057 4.057 26 C -0.194 4.194 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.027 0.973 41 H -0.014 1.014 42 H 0.039 0.961 43 H 0.260 0.740 44 H 0.088 0.912 45 H 0.019 0.981 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.117 0.883 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 -1.767 -12.620 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.000 4.000 3 N -0.346 5.346 4 C -0.002 4.002 5 C -0.230 4.230 6 C 0.107 3.893 7 C -0.223 4.223 8 C -0.074 4.074 9 C -0.113 4.113 10 C -0.031 4.031 11 N -0.252 5.252 12 C 0.067 3.933 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.035 4.035 22 C -0.152 4.152 23 C -0.228 4.228 24 C -0.221 4.221 25 C -0.076 4.076 26 C -0.216 4.216 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.004 0.996 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.037 0.963 46 H 0.126 0.874 47 H 0.107 0.893 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.135 0.865 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.308 -1.773 -13.113 17.406 hybrid contribution -0.798 0.018 0.820 1.144 sum 10.510 -1.755 -12.293 16.268 Atomic orbital electron populations 1.22250 0.96586 1.01665 1.02792 1.21285 0.93891 0.82831 1.02022 1.46478 1.72457 1.12940 1.02723 1.21275 0.95716 0.97871 0.85296 1.22232 0.97869 1.01739 1.01127 1.17705 0.94665 0.91582 0.85334 1.20529 1.09616 0.94054 0.98106 1.20625 0.97196 0.98295 0.91246 1.19556 1.02881 0.93987 0.94867 1.20903 0.93955 0.95329 0.92873 1.62106 1.06933 1.14510 1.41664 1.19757 0.87900 0.92257 0.93351 1.21148 0.93853 0.96639 1.42627 0.92030 1.24949 0.98846 0.94903 0.95777 1.69946 1.28394 1.10031 1.45490 0.86629 0.82926 0.79821 0.78432 1.20254 1.21451 1.20338 1.21572 0.97895 0.92115 0.91960 1.22466 0.95512 0.97804 0.99447 1.23029 0.93084 1.03261 1.03453 1.22897 1.04072 0.93387 1.01777 1.20843 0.95323 0.94321 0.97156 1.20561 1.09450 1.00500 0.91137 0.91728 0.92847 0.92153 0.91577 0.90805 0.91479 0.90765 0.92219 0.92186 0.92857 0.86847 0.86746 0.91368 0.95507 0.99609 0.94291 0.93048 0.89368 0.96287 0.87449 0.89341 0.89535 0.89369 0.89094 0.86495 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.12 1.31 5.88 -4.04 -0.02 1.29 16 3 N -0.63 -7.86 2.61 -171.75 -0.45 -8.31 16 4 C 0.12 1.23 5.88 -4.04 -0.02 1.20 16 5 C -0.17 -1.50 10.24 37.16 0.38 -1.12 16 6 C 0.21 3.16 6.55 -83.79 -0.55 2.61 16 7 C -0.20 -3.07 9.21 -39.38 -0.36 -3.43 16 8 C -0.05 -0.90 9.71 -39.62 -0.38 -1.29 16 9 C -0.11 -2.02 5.03 -104.59 -0.53 -2.55 16 10 C 0.10 1.82 4.99 -4.98 -0.02 1.79 16 11 N -0.53 -11.44 4.42 -237.52 -1.05 -12.49 16 12 C 0.19 5.04 4.55 -4.98 -0.02 5.02 16 13 C -0.50 -14.32 8.37 -34.44 -0.29 -14.60 16 14 H 0.06 1.74 7.18 -52.49 -0.38 1.36 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.09 1.82 5.09 -3.83 -0.02 1.80 16 22 C -0.13 -2.12 4.65 -90.62 -0.42 -2.54 16 23 C -0.19 -2.55 9.99 -26.73 -0.27 -2.81 16 24 C -0.18 -2.49 10.25 -26.73 -0.27 -2.76 16 25 C -0.06 -1.05 8.35 -39.61 -0.33 -1.38 16 26 C -0.19 -3.21 9.21 -39.38 -0.36 -3.58 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 32 H 0.07 0.58 8.07 -51.93 -0.42 0.17 16 33 H 0.07 0.77 6.20 -51.93 -0.32 0.45 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.11 1.49 6.14 -52.49 -0.32 1.17 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 40 H 0.03 0.51 7.91 -51.93 -0.41 0.10 16 41 H -0.01 -0.39 8.12 -51.93 -0.42 -0.81 16 42 H 0.04 1.09 6.25 -51.93 -0.32 0.77 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.09 1.91 6.65 -51.92 -0.35 1.57 16 45 H 0.02 0.37 7.85 -51.92 -0.41 -0.04 16 46 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 47 H 0.09 1.18 8.03 -51.93 -0.42 0.76 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 51 H 0.12 2.19 7.97 -52.49 -0.42 1.77 16 52 H 0.12 1.73 6.14 -52.48 -0.32 1.40 16 LS Contribution 410.03 15.07 6.18 6.18 Total: -1.00 -30.48 410.03 -12.20 -42.68 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -9.38 Total: 3.49 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -3.22 Total: -22.36 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.76 Total: -46.99 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.48 -12.20 -42.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091579.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.509 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds