Wall clock time and date at job start Tue Mar 31 2020 11:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46885 * 2 1 4 4 C 1.46501 * 119.99713 * 269.99578 * 3 2 1 5 5 C 1.52997 * 109.47042 * 270.00222 * 4 3 2 6 6 C 1.39671 * 120.00085 * 89.99710 * 3 2 1 7 7 C 1.38915 * 120.07326 * 179.97438 * 6 3 2 8 8 C 1.38099 * 119.92409 * 180.02562 * 7 6 3 9 9 C 1.38282 * 120.07724 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.92960 * 179.97438 * 9 8 7 11 11 N 1.46896 * 109.47302 * 85.23045 * 10 9 8 12 12 C 1.46902 * 110.99669 * 75.22344 * 11 10 9 13 13 C 1.50697 * 109.47378 * 190.00122 * 12 11 10 14 14 H 1.08002 * 119.99519 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00406 * 179.72775 * 13 12 11 16 16 N 1.31515 * 119.99728 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00108 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47141 * 59.99665 * 17 15 13 19 19 H 1.48503 * 109.47385 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47432 * 299.99785 * 17 15 13 21 21 C 1.46895 * 111.00222 * 199.17709 * 11 10 9 22 22 C 1.52993 * 109.47267 * 65.96589 * 21 11 10 23 23 C 1.53005 * 117.50109 * 242.63510 * 22 21 11 24 24 C 1.53002 * 117.50230 * 174.01115 * 22 21 11 25 25 C 1.38289 * 120.15040 * 0.27683 * 9 8 7 26 26 C 1.38105 * 120.06926 * 359.44686 * 25 9 8 27 27 H 1.09002 * 109.47667 * 300.00447 * 1 2 3 28 28 H 1.09004 * 109.46794 * 60.00387 * 1 2 3 29 29 H 1.09004 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47293 * 239.99619 * 2 1 3 31 31 H 1.08997 * 109.47018 * 119.99303 * 2 1 3 32 32 H 1.08999 * 109.46950 * 30.00171 * 4 3 2 33 33 H 1.08998 * 109.47077 * 150.00450 * 4 3 2 34 34 H 1.09001 * 109.47053 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47206 * 299.99792 * 5 4 3 36 36 H 1.09003 * 109.47460 * 60.00187 * 5 4 3 37 37 H 1.08002 * 120.03365 * 0.05415 * 7 6 3 38 38 H 1.07998 * 119.96262 * 179.97438 * 8 7 6 39 39 H 1.09005 * 109.47165 * 325.23509 * 10 9 8 40 40 H 1.08996 * 109.47475 * 205.23838 * 10 9 8 41 41 H 1.09001 * 109.47088 * 70.00215 * 12 11 10 42 42 H 1.09001 * 109.47388 * 309.99914 * 12 11 10 43 43 H 0.96994 * 119.99867 * 180.02562 * 16 15 13 44 44 H 1.09007 * 109.47323 * 185.96947 * 21 11 10 45 45 H 1.09008 * 109.47414 * 305.96544 * 21 11 10 46 46 H 1.09005 * 115.54951 * 28.34297 * 22 21 11 47 47 H 1.08995 * 117.49377 * 359.97438 * 23 22 21 48 48 H 1.09000 * 117.49760 * 145.01653 * 23 22 21 49 49 H 1.08996 * 117.50121 * 214.98116 * 24 22 21 50 50 H 1.09003 * 117.49874 * 0.02562 * 24 22 21 51 51 H 1.07992 * 119.96518 * 179.70170 * 25 9 8 52 52 H 1.08006 * 120.03938 * 180.27881 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7104 6 6 2.2510 2.0397 1.2096 7 6 2.7145 3.3493 1.2113 8 6 2.9440 3.9972 2.4091 9 6 2.7136 3.3438 3.6058 10 6 2.9657 4.0538 4.9109 11 7 1.7799 4.8390 5.2782 12 6 0.7076 3.9695 5.7803 13 6 -0.5644 4.7664 5.9139 14 1 -0.5751 5.8142 5.6523 15 6 -1.7159 4.1568 6.3651 16 7 -1.7042 2.8796 6.6784 17 14 -3.2923 5.1449 6.5313 18 1 -3.6736 5.6954 5.2058 19 1 -4.3782 4.2641 7.0319 20 1 -3.0788 6.2606 7.4877 21 6 2.1193 5.8770 6.2607 22 6 3.0525 6.9038 5.6160 23 6 4.4563 7.0515 6.2064 24 6 3.4111 8.1451 6.4354 25 6 2.2581 2.0380 3.6077 26 6 2.0210 1.3861 2.4135 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.8891 2.3448 -2.6546 35 1 4.3883 2.2156 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 2.8947 3.8602 0.2770 38 1 3.3048 5.0152 2.4112 39 1 3.8227 4.7188 4.8031 40 1 3.1713 3.3199 5.6900 41 1 0.9899 3.5699 6.7543 42 1 0.5496 3.1474 5.0822 43 1 -2.5142 2.4506 6.9955 44 1 1.2081 6.3733 6.5945 45 1 2.6177 5.4193 7.1153 46 1 2.9440 7.0262 4.5383 47 1 4.7148 6.4174 7.0544 48 1 5.2716 7.2709 5.5171 49 1 3.5388 9.0841 5.8968 50 1 2.9825 8.2301 7.4340 51 1 2.0837 1.5290 4.5440 52 1 1.6610 0.3678 2.4156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091579.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:51 Heat of formation + Delta-G solvation = 41.186653 kcal Electronic energy + Delta-G solvation = -26884.721093 eV Core-core repulsion = 23463.139116 eV Total energy + Delta-G solvation = -3421.581976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73003 -39.31900 -37.83846 -36.57323 -34.58766 -33.36584 -32.27545 -31.38772 -29.76426 -29.14143 -27.21548 -25.60150 -24.91249 -23.49326 -23.09428 -22.83656 -22.20605 -21.10959 -20.67927 -18.56284 -18.32292 -17.05977 -16.82082 -16.65171 -16.24943 -15.79577 -15.62170 -15.37176 -15.15839 -14.87528 -14.68712 -14.50363 -14.32429 -14.07881 -13.90103 -13.57825 -13.48495 -13.25034 -13.14418 -13.00467 -12.85503 -12.66723 -12.59333 -12.47983 -12.30141 -12.13952 -12.07679 -12.03284 -11.82851 -11.73684 -11.42253 -11.26554 -11.02824 -10.75032 -10.54571 -10.46632 -9.68251 -8.94758 -8.18087 -8.01511 -6.26230 0.66769 0.78423 1.38806 1.42436 1.49953 2.27838 2.40945 2.94457 3.03219 3.15238 3.50520 3.93370 3.98833 4.02511 4.14331 4.17177 4.20366 4.23728 4.26488 4.31010 4.40686 4.53719 4.54940 4.57654 4.59882 4.68039 4.72471 4.74368 4.83005 4.83868 4.89361 4.94910 4.97765 5.01683 5.04386 5.09196 5.10829 5.23034 5.29343 5.31447 5.33411 5.39502 5.41429 5.46109 5.50145 5.63339 5.67981 5.98900 6.06739 6.12116 6.45514 6.52262 6.68572 6.72235 6.90234 7.42405 8.93474 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.004172 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.579675 B = 6709.981716 C = 8920.650503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.632 5.632 4 C 0.115 3.885 5 C -0.163 4.163 6 C 0.211 3.789 7 C -0.202 4.202 8 C -0.056 4.056 9 C -0.137 4.137 10 C 0.105 3.895 11 N -0.530 5.530 12 C 0.211 3.789 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.097 3.903 22 C -0.153 4.153 23 C -0.173 4.173 24 C -0.172 4.172 25 C -0.078 4.078 26 C -0.207 4.207 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.011 0.989 41 H -0.049 1.049 42 H 0.014 0.986 43 H 0.262 0.738 44 H 0.059 0.941 45 H 0.012 0.988 46 H 0.107 0.893 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.358 -0.324 -15.128 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.343 5.343 4 C -0.007 4.007 5 C -0.222 4.222 6 C 0.110 3.890 7 C -0.224 4.224 8 C -0.075 4.075 9 C -0.139 4.139 10 C -0.022 4.022 11 N -0.254 5.254 12 C 0.085 3.915 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.574 5.574 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.031 4.031 22 C -0.171 4.171 23 C -0.209 4.209 24 C -0.209 4.209 25 C -0.097 4.097 26 C -0.230 4.230 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.111 0.889 40 H 0.030 0.970 41 H -0.031 1.031 42 H 0.032 0.968 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.030 0.970 46 H 0.125 0.875 47 H 0.105 0.895 48 H 0.129 0.871 49 H 0.129 0.871 50 H 0.107 0.893 51 H 0.113 0.887 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.046 -0.328 -15.651 19.752 hybrid contribution -0.993 -0.506 1.522 1.886 sum 11.053 -0.835 -14.129 17.958 Atomic orbital electron populations 1.22196 0.96802 1.02432 1.01313 1.21448 0.93626 0.82137 1.03201 1.46755 1.71440 1.13560 1.02555 1.21513 0.97152 0.97653 0.84411 1.22154 0.96309 1.02151 1.01569 1.17821 0.93422 0.91755 0.86050 1.20807 1.08841 0.94050 0.98678 1.20819 0.96750 0.98951 0.90943 1.19574 1.04911 0.94149 0.95300 1.20893 0.93358 0.95117 0.92874 1.62058 1.07425 1.14297 1.41618 1.19345 0.89222 0.92046 0.90881 1.21445 0.94967 0.96704 1.42760 0.92216 1.25855 1.02463 0.95948 0.95196 1.70087 1.29428 1.11730 1.46147 0.85525 0.78406 0.78482 0.78758 1.19569 1.20777 1.19133 1.21499 0.97595 0.92217 0.91818 1.22191 0.96974 0.98615 0.99366 1.23104 0.92259 1.02374 1.03200 1.23003 1.03101 0.93520 1.01282 1.20815 0.96758 0.94980 0.97140 1.20654 1.09998 1.01047 0.91267 0.95130 0.92223 0.90372 0.88618 0.91376 0.89532 0.91010 0.90190 0.93628 0.92541 0.84260 0.85128 0.88903 0.97040 1.03140 0.96798 0.92880 0.92210 0.97010 0.87515 0.89486 0.87107 0.87148 0.89340 0.88703 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 10.24 71.98 0.74 -2.78 16 2 C 0.12 2.33 5.88 86.38 0.51 2.84 16 3 N -0.63 -14.63 2.61 -697.31 -1.82 -16.45 16 4 C 0.12 1.98 5.88 86.38 0.51 2.49 16 5 C -0.16 -2.36 10.24 71.98 0.74 -1.63 16 6 C 0.21 6.37 6.55 38.22 0.25 6.63 16 7 C -0.20 -5.94 9.21 22.40 0.21 -5.73 16 8 C -0.06 -1.82 9.71 22.25 0.22 -1.61 16 9 C -0.14 -5.22 5.03 -19.84 -0.10 -5.32 16 10 C 0.10 4.10 4.99 85.56 0.43 4.53 16 11 N -0.53 -24.08 4.42 -905.39 -4.00 -28.09 16 12 C 0.21 11.84 4.55 85.56 0.39 12.23 16 13 C -0.52 -30.78 8.37 25.60 0.21 -30.56 16 14 H 0.06 3.48 7.18 -2.91 -0.02 3.46 16 15 C 0.00 0.19 5.46 84.65 0.46 0.65 16 16 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 17 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 C 0.10 3.93 5.09 86.30 0.44 4.37 16 22 C -0.15 -4.71 4.65 -10.79 -0.05 -4.76 16 23 C -0.17 -4.19 9.99 30.60 0.31 -3.89 16 24 C -0.17 -4.29 10.25 30.60 0.31 -3.97 16 25 C -0.08 -3.05 8.35 22.25 0.19 -2.87 16 26 C -0.21 -7.15 9.21 22.40 0.21 -6.94 16 27 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.36 8.07 -2.39 -0.02 1.34 16 31 H 0.07 1.43 6.20 -2.39 -0.01 1.41 16 32 H 0.09 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.07 1.29 6.20 -2.39 -0.01 1.27 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.14 3.32 6.14 -2.91 -0.02 3.30 16 38 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 39 H 0.09 3.10 6.66 -2.38 -0.02 3.09 16 40 H 0.01 0.47 7.91 -2.39 -0.02 0.45 16 41 H -0.05 -3.01 8.12 -2.39 -0.02 -3.03 16 42 H 0.01 0.84 6.25 -2.39 -0.01 0.83 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.06 2.72 6.65 -2.38 -0.02 2.70 16 45 H 0.01 0.48 7.85 -2.38 -0.02 0.46 16 46 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 47 H 0.09 2.16 8.03 -2.39 -0.02 2.15 16 48 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.09 4.00 7.97 -2.91 -0.02 3.98 16 52 H 0.12 3.87 6.14 -2.91 -0.02 3.85 16 Total: -1.00 -69.17 410.03 3.31 -65.87 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.86 Total: 24.84 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 5.95 Total: -36.33 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -5.53 Total: -102.29 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -69.17 3.31 -65.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091579.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.053 kcal (2) G-P(sol) polarization free energy of solvation -69.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds