Wall clock time and date at job start Tue Mar 31 2020 11:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46684 * 2 1 4 4 C 1.53038 * 109.45929 * 240.02428 * 2 1 3 5 5 C 1.53118 * 109.28057 * 180.80746 * 4 2 1 6 6 C 1.53116 * 109.15973 * 57.65045 * 5 4 2 7 7 C 1.53037 * 109.28181 * 302.35004 * 6 5 4 8 8 H 1.09003 * 109.46242 * 299.15905 * 7 6 5 9 9 C 1.53007 * 109.46047 * 179.18316 * 7 6 5 10 10 N 1.46845 * 109.52170 * 59.17936 * 7 6 5 11 11 C 1.46903 * 110.99777 * 174.16112 * 10 7 6 12 12 C 1.50699 * 109.47030 * 59.66132 * 11 10 7 13 13 C 1.38277 * 119.92659 * 264.38723 * 12 11 10 14 14 C 1.38108 * 120.07445 * 179.72757 * 13 12 11 15 15 C 1.38910 * 119.92472 * 0.54816 * 14 13 12 16 16 N 1.39669 * 120.07452 * 179.74984 * 15 14 13 17 17 C 1.46497 * 120.00110 * 179.97438 * 16 15 14 18 18 C 1.46500 * 120.00407 * 359.97438 * 16 15 14 19 19 C 1.50703 * 109.47130 * 89.99591 * 18 16 15 20 20 H 1.08004 * 120.00068 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99975 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47069 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46879 * 120.00514 * 23 21 19 26 26 H 1.48503 * 109.47099 * 240.00558 * 23 21 19 27 27 C 1.38913 * 119.85103 * 359.72340 * 15 14 13 28 28 C 1.38103 * 119.92064 * 0.02562 * 27 15 14 29 29 H 1.08999 * 109.47363 * 179.53676 * 1 2 3 30 30 H 1.09004 * 109.47483 * 59.52946 * 1 2 3 31 31 H 1.09007 * 109.47098 * 299.53638 * 1 2 3 32 32 H 1.09001 * 109.50778 * 300.74635 * 4 2 1 33 33 H 1.09000 * 109.50552 * 60.86311 * 4 2 1 34 34 H 1.08999 * 109.52443 * 177.56321 * 5 4 2 35 35 H 1.08999 * 109.52014 * 297.75064 * 5 4 2 36 36 H 1.08999 * 109.50140 * 62.29255 * 6 5 4 37 37 H 1.08999 * 109.50284 * 182.40496 * 6 5 4 38 38 H 1.08999 * 109.46788 * 60.99724 * 9 7 6 39 39 H 1.08996 * 109.46472 * 180.99471 * 9 7 6 40 40 H 1.08994 * 109.46878 * 300.99185 * 9 7 6 41 41 H 1.09001 * 109.46768 * 179.66065 * 11 10 7 42 42 H 1.08999 * 109.47170 * 299.66218 * 11 10 7 43 43 H 1.07997 * 119.96534 * 359.97438 * 13 12 11 44 44 H 1.08007 * 120.03668 * 180.26946 * 14 13 12 45 45 H 1.09003 * 109.47044 * 90.00047 * 17 16 15 46 46 H 1.09000 * 109.47871 * 209.99987 * 17 16 15 47 47 H 1.08999 * 109.47090 * 329.99985 * 17 16 15 48 48 H 1.08996 * 109.47914 * 210.00144 * 18 16 15 49 49 H 1.09004 * 109.46911 * 330.00503 * 18 16 15 50 50 H 0.96997 * 119.99974 * 179.97438 * 22 21 19 51 51 H 1.07994 * 120.03838 * 180.02562 * 27 15 14 52 52 H 1.08007 * 119.95844 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5709 -0.7362 -1.2357 6 6 4.0547 -1.4189 0.0466 7 6 3.4864 -0.6777 1.2590 8 1 3.8404 0.3532 1.2531 9 6 3.9509 -1.3688 2.5427 10 7 2.0193 -0.6918 1.1993 11 6 1.4373 -0.1105 2.4165 12 6 1.9080 1.3130 2.5680 13 6 3.0011 1.5970 3.3658 14 6 3.4385 2.8999 3.5023 15 6 2.7720 3.9269 2.8461 16 7 3.2085 5.2463 2.9861 17 6 2.5048 6.3281 2.2929 18 6 4.3700 5.5484 3.8262 19 6 5.6232 5.4883 2.9913 20 1 5.5606 5.2493 1.9398 21 6 6.8495 5.7393 3.5694 22 7 6.9256 6.0307 4.8496 23 14 8.4027 5.6655 2.5343 24 1 8.0485 5.3202 1.1341 25 1 9.0792 6.9872 2.5618 26 1 9.3152 4.6308 3.0840 27 6 1.6708 3.6388 2.0498 28 6 1.2420 2.3331 1.9136 29 1 -0.3634 -1.0276 -0.0083 30 1 -0.3634 0.5211 -0.8857 31 1 -0.3634 0.5066 0.8942 32 1 1.6658 -1.7448 -1.2576 33 1 1.6894 -0.1983 -2.1400 34 1 3.9378 -1.2865 -2.1021 35 1 3.9456 0.2868 -1.2673 36 1 3.7123 -2.4537 0.0594 37 1 5.1438 -1.3949 0.0830 38 1 5.0392 -1.3422 2.5962 39 1 3.5318 -0.8516 3.4057 40 1 3.6124 -2.4049 2.5403 41 1 0.3499 -0.1279 2.3434 42 1 1.7526 -0.6916 3.2832 43 1 3.5158 0.7987 3.8797 44 1 4.2950 3.1205 4.1222 45 1 1.7120 6.7148 2.9332 46 1 3.2073 7.1286 2.0609 47 1 2.0715 5.9460 1.3686 48 1 4.2628 6.5472 4.2491 49 1 4.4353 4.8176 4.6324 50 1 7.7884 6.2070 5.2563 51 1 1.1507 4.4349 1.5380 52 1 0.3856 2.1085 1.2950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093102911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:22 Heat of formation + Delta-G solvation = 28.083317 kcal Electronic energy + Delta-G solvation = -27946.936876 eV Core-core repulsion = 24524.786697 eV Total energy + Delta-G solvation = -3422.150179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.19931 -38.46360 -35.82129 -33.65760 -33.63140 -32.63294 -30.43721 -29.71238 -28.36687 -27.84275 -26.30720 -26.01131 -24.44746 -22.68946 -21.67032 -21.29342 -20.90301 -19.77389 -19.10183 -16.67319 -16.47164 -15.92325 -15.70532 -15.19367 -14.80604 -14.51166 -14.45804 -14.10815 -14.01584 -13.71528 -13.34678 -13.00584 -12.79597 -12.70806 -12.43892 -12.29165 -12.21094 -12.08761 -11.68491 -11.67773 -11.53307 -11.42840 -11.39837 -11.21597 -11.04311 -10.92206 -10.73446 -10.65740 -10.59935 -10.34696 -10.18538 -10.02832 -9.83309 -9.73906 -8.82209 -8.53964 -8.28918 -8.08095 -6.48881 -6.04551 -4.20544 2.07237 2.20685 3.22579 3.30866 3.35644 4.03037 4.12429 4.38299 4.52600 4.79863 4.84905 4.92676 5.02259 5.18598 5.33237 5.33773 5.38641 5.44776 5.49993 5.53480 5.56117 5.61209 5.67682 5.76377 5.81542 5.84802 5.87019 5.93382 5.95971 5.98908 6.02801 6.05128 6.10854 6.16602 6.23206 6.26319 6.26889 6.30999 6.37992 6.45273 6.52691 6.62077 6.91976 7.00056 7.13647 7.21225 7.29140 7.31787 7.40511 7.58033 7.78037 8.12397 8.23750 8.45986 8.88730 9.46508 10.92587 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.004031 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.037393 B = 6945.170089 C = 7828.309316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.051 0.949 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.110 4.110 7 C 0.079 3.921 8 H 0.052 0.948 9 C -0.151 4.151 10 N -0.520 5.520 11 C 0.098 3.902 12 C -0.206 4.206 13 C -0.066 4.066 14 C -0.188 4.188 15 C 0.241 3.759 16 N -0.615 5.615 17 C 0.099 3.901 18 C 0.249 3.751 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.222 4.222 28 C -0.068 4.068 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.035 0.965 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.263 0.737 51 H 0.111 0.889 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 -12.695 -8.012 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 H 0.069 0.931 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.029 4.029 8 H 0.070 0.930 9 C -0.208 4.208 10 N -0.244 5.244 11 C -0.029 4.029 12 C -0.210 4.210 13 C -0.085 4.085 14 C -0.210 4.210 15 C 0.134 3.866 16 N -0.321 5.321 17 C -0.045 4.045 18 C 0.129 3.871 19 C -0.569 4.569 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.246 4.246 28 C -0.087 4.087 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.148 0.852 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.129 0.871 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.156 -12.908 -7.875 18.791 hybrid contribution 1.353 1.087 -0.486 1.802 sum -9.804 -11.821 -8.361 17.486 Atomic orbital electron populations 1.21998 0.94949 1.02119 1.01685 1.21601 0.94824 0.96619 0.90172 0.93073 1.21604 0.95436 1.00974 0.96671 1.21582 0.95933 1.00857 0.97676 1.21611 0.99590 0.99742 0.93827 1.21551 0.87508 0.98838 0.94976 0.93009 1.22015 1.00777 1.00758 0.97274 1.62430 1.06933 1.53264 1.01737 1.21098 0.99139 0.89961 0.92717 1.20008 1.00375 0.95951 1.04667 1.20815 0.95223 0.95643 0.96815 1.20892 1.03113 0.91741 1.05268 1.17956 0.91393 0.85303 0.91943 1.47096 1.32030 1.02293 1.50661 1.21465 0.96401 0.90911 0.95771 1.19285 0.81317 0.96749 0.89737 1.21604 0.91236 1.47772 0.96322 0.92294 1.24954 0.99088 0.94975 0.94985 1.69937 1.25341 1.47479 1.10597 0.86487 0.83007 0.77722 0.80545 1.19763 1.20904 1.20795 1.20561 1.00844 0.96826 1.06338 1.20667 0.98262 0.91978 0.97810 0.92136 0.92631 0.91914 0.91511 0.92084 0.92210 0.92217 0.91540 0.91916 0.92455 0.91743 0.92344 0.90523 0.90467 0.86971 0.85193 0.94625 0.91466 0.92765 0.95221 0.94659 0.92681 0.87060 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.18 37.16 0.30 -1.21 16 2 C 0.08 0.90 1.79 -67.72 -0.12 0.78 16 3 H 0.05 0.73 6.25 -51.93 -0.32 0.40 16 4 C -0.11 -1.16 5.37 -26.65 -0.14 -1.31 16 5 C -0.12 -1.36 6.00 -26.61 -0.16 -1.52 16 6 C -0.11 -1.26 5.37 -26.65 -0.14 -1.40 16 7 C 0.08 1.02 1.82 -67.72 -0.12 0.90 16 8 H 0.05 0.82 6.71 -51.93 -0.35 0.48 16 9 C -0.15 -1.78 8.50 37.16 0.32 -1.46 16 10 N -0.52 -6.40 4.53 -220.18 -1.00 -7.40 16 11 C 0.10 1.23 4.85 -4.97 -0.02 1.21 16 12 C -0.21 -3.11 4.01 -104.59 -0.42 -3.52 16 13 C -0.07 -1.11 8.17 -39.61 -0.32 -1.43 16 14 C -0.19 -3.78 9.21 -39.38 -0.36 -4.14 16 15 C 0.24 4.88 6.55 -83.79 -0.55 4.33 16 16 N -0.62 -13.19 2.99 -181.00 -0.54 -13.73 16 17 C 0.10 1.74 10.19 59.85 0.61 2.35 16 18 C 0.25 6.24 4.91 -5.19 -0.03 6.21 16 19 C -0.53 -14.46 9.39 -34.44 -0.32 -14.78 16 20 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 23 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.22 -3.87 9.21 -39.38 -0.36 -4.23 16 28 C -0.07 -1.04 7.76 -39.61 -0.31 -1.35 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.64 4.44 -51.92 -0.23 0.41 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.78 3.83 -51.93 -0.20 0.58 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.90 5.91 -51.93 -0.31 0.59 16 42 H 0.08 0.94 6.12 -51.93 -0.32 0.62 16 43 H 0.11 1.72 5.74 -52.49 -0.30 1.42 16 44 H 0.13 2.91 6.14 -52.48 -0.32 2.59 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.94 6.20 -51.93 -0.32 0.61 16 50 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 51 H 0.11 1.77 6.14 -52.49 -0.32 1.45 16 52 H 0.11 1.45 5.45 -52.48 -0.29 1.17 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -28.17 379.37 -11.00 -39.17 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.64 Total: 3.78 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.26 Total: -18.97 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.80 Total: -45.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.17 -11.00 -39.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093102911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.253 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds