Wall clock time and date at job start Tue Mar 31 2020 11:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46684 * 2 1 4 4 C 1.53038 * 109.45929 * 240.02428 * 2 1 3 5 5 C 1.53118 * 109.28057 * 180.80746 * 4 2 1 6 6 C 1.53116 * 109.15973 * 57.65045 * 5 4 2 7 7 C 1.53037 * 109.28181 * 302.35004 * 6 5 4 8 8 H 1.09003 * 109.46242 * 299.15905 * 7 6 5 9 9 C 1.53007 * 109.46047 * 179.18316 * 7 6 5 10 10 N 1.46845 * 109.52170 * 59.17936 * 7 6 5 11 11 C 1.46903 * 110.99777 * 174.16112 * 10 7 6 12 12 C 1.50699 * 109.47030 * 59.66132 * 11 10 7 13 13 C 1.38277 * 119.92659 * 264.38723 * 12 11 10 14 14 C 1.38108 * 120.07445 * 179.72757 * 13 12 11 15 15 C 1.38910 * 119.92472 * 0.54816 * 14 13 12 16 16 N 1.39669 * 120.07452 * 179.74984 * 15 14 13 17 17 C 1.46497 * 120.00110 * 179.97438 * 16 15 14 18 18 C 1.46500 * 120.00407 * 359.97438 * 16 15 14 19 19 C 1.50703 * 109.47130 * 89.99591 * 18 16 15 20 20 H 1.08004 * 120.00068 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99975 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47069 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46879 * 120.00514 * 23 21 19 26 26 H 1.48503 * 109.47099 * 240.00558 * 23 21 19 27 27 C 1.38913 * 119.85103 * 359.72340 * 15 14 13 28 28 C 1.38103 * 119.92064 * 0.02562 * 27 15 14 29 29 H 1.08999 * 109.47363 * 179.53676 * 1 2 3 30 30 H 1.09004 * 109.47483 * 59.52946 * 1 2 3 31 31 H 1.09007 * 109.47098 * 299.53638 * 1 2 3 32 32 H 1.09001 * 109.50778 * 300.74635 * 4 2 1 33 33 H 1.09000 * 109.50552 * 60.86311 * 4 2 1 34 34 H 1.08999 * 109.52443 * 177.56321 * 5 4 2 35 35 H 1.08999 * 109.52014 * 297.75064 * 5 4 2 36 36 H 1.08999 * 109.50140 * 62.29255 * 6 5 4 37 37 H 1.08999 * 109.50284 * 182.40496 * 6 5 4 38 38 H 1.08999 * 109.46788 * 60.99724 * 9 7 6 39 39 H 1.08996 * 109.46472 * 180.99471 * 9 7 6 40 40 H 1.08994 * 109.46878 * 300.99185 * 9 7 6 41 41 H 1.09001 * 109.46768 * 179.66065 * 11 10 7 42 42 H 1.08999 * 109.47170 * 299.66218 * 11 10 7 43 43 H 1.07997 * 119.96534 * 359.97438 * 13 12 11 44 44 H 1.08007 * 120.03668 * 180.26946 * 14 13 12 45 45 H 1.09003 * 109.47044 * 90.00047 * 17 16 15 46 46 H 1.09000 * 109.47871 * 209.99987 * 17 16 15 47 47 H 1.08999 * 109.47090 * 329.99985 * 17 16 15 48 48 H 1.08996 * 109.47914 * 210.00144 * 18 16 15 49 49 H 1.09004 * 109.46911 * 330.00503 * 18 16 15 50 50 H 0.96997 * 119.99974 * 179.97438 * 22 21 19 51 51 H 1.07994 * 120.03838 * 180.02562 * 27 15 14 52 52 H 1.08007 * 119.95844 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5709 -0.7362 -1.2357 6 6 4.0547 -1.4189 0.0466 7 6 3.4864 -0.6777 1.2590 8 1 3.8404 0.3532 1.2531 9 6 3.9509 -1.3688 2.5427 10 7 2.0193 -0.6918 1.1993 11 6 1.4373 -0.1105 2.4165 12 6 1.9080 1.3130 2.5680 13 6 3.0011 1.5970 3.3658 14 6 3.4385 2.8999 3.5023 15 6 2.7720 3.9269 2.8461 16 7 3.2085 5.2463 2.9861 17 6 2.5048 6.3281 2.2929 18 6 4.3700 5.5484 3.8262 19 6 5.6232 5.4883 2.9913 20 1 5.5606 5.2493 1.9398 21 6 6.8495 5.7393 3.5694 22 7 6.9256 6.0307 4.8496 23 14 8.4027 5.6655 2.5343 24 1 8.0485 5.3202 1.1341 25 1 9.0792 6.9872 2.5618 26 1 9.3152 4.6308 3.0840 27 6 1.6708 3.6388 2.0498 28 6 1.2420 2.3331 1.9136 29 1 -0.3634 -1.0276 -0.0083 30 1 -0.3634 0.5211 -0.8857 31 1 -0.3634 0.5066 0.8942 32 1 1.6658 -1.7448 -1.2576 33 1 1.6894 -0.1983 -2.1400 34 1 3.9378 -1.2865 -2.1021 35 1 3.9456 0.2868 -1.2673 36 1 3.7123 -2.4537 0.0594 37 1 5.1438 -1.3949 0.0830 38 1 5.0392 -1.3422 2.5962 39 1 3.5318 -0.8516 3.4057 40 1 3.6124 -2.4049 2.5403 41 1 0.3499 -0.1279 2.3434 42 1 1.7526 -0.6916 3.2832 43 1 3.5158 0.7987 3.8797 44 1 4.2950 3.1205 4.1222 45 1 1.7120 6.7148 2.9332 46 1 3.2073 7.1286 2.0609 47 1 2.0715 5.9460 1.3686 48 1 4.2628 6.5472 4.2491 49 1 4.4353 4.8176 4.6324 50 1 7.7884 6.2070 5.2563 51 1 1.1507 4.4349 1.5380 52 1 0.3856 2.1085 1.2950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093102911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:21 Heat of formation + Delta-G solvation = 14.150107 kcal Electronic energy + Delta-G solvation = -27947.541065 eV Core-core repulsion = 24524.786697 eV Total energy + Delta-G solvation = -3422.754369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33014 -39.79181 -37.28636 -35.04155 -34.59380 -34.37389 -31.88120 -31.00452 -29.68909 -29.32097 -27.35916 -27.15526 -26.05492 -24.25780 -23.06662 -22.42233 -21.86818 -21.10445 -20.19651 -18.67563 -18.10502 -17.07281 -16.76958 -16.64602 -16.24266 -15.98618 -15.62756 -15.43112 -15.24650 -14.91098 -14.54885 -14.48778 -14.20611 -14.05353 -13.73134 -13.34972 -13.25088 -13.24833 -13.16262 -13.07317 -12.83266 -12.76644 -12.62962 -12.49117 -12.46606 -12.36083 -12.20527 -12.07470 -11.77059 -11.67567 -11.56586 -11.37480 -11.02975 -10.96155 -10.67812 -10.37030 -9.69027 -9.15558 -8.39431 -7.83018 -6.41057 0.65935 0.81200 1.32466 1.34124 1.46139 2.30823 2.59711 2.95644 3.02674 3.20373 3.86782 3.94971 3.96681 4.00996 4.15899 4.18199 4.23950 4.38464 4.44284 4.46187 4.49739 4.58643 4.60939 4.66106 4.72665 4.74853 4.80687 4.83207 4.90952 4.94016 4.95581 4.99534 5.03959 5.06876 5.10309 5.13306 5.19123 5.20510 5.24365 5.32376 5.34189 5.40246 5.43070 5.55155 5.58677 5.65902 5.66522 5.86370 6.03522 6.17777 6.29494 6.35495 6.46402 6.79053 6.89895 7.30960 8.80000 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.004031 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.037393 B = 6945.170089 C = 7828.309316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 H 0.026 0.974 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.108 4.108 7 C 0.080 3.920 8 H 0.015 0.985 9 C -0.148 4.148 10 N -0.511 5.511 11 C 0.099 3.901 12 C -0.189 4.189 13 C -0.065 4.065 14 C -0.217 4.217 15 C 0.213 3.787 16 N -0.632 5.632 17 C 0.099 3.901 18 C 0.267 3.733 19 C -0.540 4.540 20 H 0.046 0.954 21 C 0.015 3.985 22 N -0.925 5.925 23 Si 0.960 3.040 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.276 1.276 27 C -0.219 4.219 28 C -0.061 4.061 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.268 0.732 51 H 0.130 0.870 52 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.883 -14.725 -10.064 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 H 0.044 0.956 4 C -0.143 4.143 5 C -0.161 4.161 6 C -0.145 4.145 7 C -0.029 4.029 8 H 0.033 0.967 9 C -0.205 4.205 10 N -0.235 5.235 11 C -0.028 4.028 12 C -0.193 4.193 13 C -0.084 4.084 14 C -0.239 4.239 15 C 0.108 3.892 16 N -0.339 5.339 17 C -0.044 4.044 18 C 0.146 3.854 19 C -0.579 4.579 20 H 0.064 0.936 21 C -0.185 4.185 22 N -0.565 5.565 23 Si 0.785 3.215 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.202 1.202 27 C -0.242 4.242 28 C -0.080 4.080 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.095 0.905 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.077 0.923 51 H 0.148 0.852 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.847 -14.955 -9.943 22.081 hybrid contribution 1.805 1.607 0.129 2.420 sum -11.042 -13.349 -9.814 19.910 Atomic orbital electron populations 1.21968 0.93132 1.02919 1.02279 1.21693 0.96251 0.95252 0.90405 0.95648 1.21597 0.94773 1.01470 0.96480 1.21595 0.96601 0.99820 0.98130 1.21597 0.99565 1.00067 0.93307 1.21534 0.88001 0.97100 0.96265 0.96667 1.21988 1.00736 1.01341 0.96481 1.62503 1.06368 1.52759 1.01826 1.21212 1.00263 0.87996 0.93354 1.20355 0.98780 0.97660 1.02538 1.20961 0.95835 0.94523 0.97111 1.20783 1.03086 0.93620 1.06459 1.18214 0.92874 0.84643 0.93497 1.46957 1.31787 1.03781 1.51424 1.21588 0.96275 0.89805 0.96761 1.18763 0.82545 0.94617 0.89510 1.21767 0.92588 1.47745 0.95826 0.93577 1.25751 1.02145 0.94474 0.96089 1.70037 1.26299 1.48144 1.12041 0.85482 0.79144 0.78159 0.78752 1.19723 1.19774 1.20154 1.20799 0.99680 0.98352 1.05369 1.21031 0.98690 0.91067 0.97251 0.91243 0.91388 0.91959 0.90554 0.90980 0.90611 0.94263 0.90390 0.92016 0.92608 0.92279 0.90905 0.88554 0.89759 0.85874 0.88893 0.92881 0.92525 0.90536 0.97269 0.97200 0.92332 0.85209 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.18 71.98 0.59 -1.78 16 2 C 0.07 1.52 1.79 44.94 0.08 1.60 16 3 H 0.03 0.68 6.25 -2.39 -0.01 0.66 16 4 C -0.11 -1.95 5.37 30.65 0.16 -1.78 16 5 C -0.12 -2.54 6.00 30.67 0.18 -2.35 16 6 C -0.11 -2.29 5.37 30.65 0.16 -2.12 16 7 C 0.08 1.96 1.82 44.94 0.08 2.04 16 8 H 0.02 0.49 6.71 -2.39 -0.02 0.48 16 9 C -0.15 -3.31 8.50 71.98 0.61 -2.70 16 10 N -0.51 -11.34 4.53 -850.52 -3.85 -15.19 16 11 C 0.10 2.23 4.85 85.56 0.41 2.65 16 12 C -0.19 -5.47 4.01 -19.84 -0.08 -5.55 16 13 C -0.07 -2.25 8.17 22.25 0.18 -2.06 16 14 C -0.22 -9.26 9.21 22.40 0.21 -9.05 16 15 C 0.21 8.86 6.55 38.22 0.25 9.11 16 16 N -0.63 -28.23 2.99 -726.56 -2.17 -30.40 16 17 C 0.10 3.51 10.19 127.77 1.30 4.81 16 18 C 0.27 14.29 4.91 85.63 0.42 14.71 16 19 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 20 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 21 C 0.01 0.84 5.46 84.65 0.46 1.30 16 22 N -0.93 -54.72 13.29 21.45 0.28 -54.43 16 23 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 C -0.22 -7.41 9.21 22.40 0.21 -7.20 16 28 C -0.06 -1.76 7.76 22.25 0.17 -1.59 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.01 4.44 -2.38 -0.01 1.00 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.37 3.83 -2.39 -0.01 1.36 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 1.87 5.91 -2.39 -0.01 1.86 16 42 H 0.08 1.84 6.12 -2.39 -0.01 1.82 16 43 H 0.12 3.86 5.74 -2.91 -0.02 3.85 16 44 H 0.09 4.60 6.14 -2.91 -0.02 4.58 16 45 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 47 H 0.08 2.33 6.20 -2.39 -0.01 2.31 16 48 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 49 H 0.01 0.58 6.20 -2.38 -0.01 0.56 16 50 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 51 H 0.13 3.84 6.14 -2.91 -0.02 3.83 16 52 H 0.14 3.20 5.45 -2.91 -0.02 3.18 16 Total: -1.00 -63.46 379.37 2.84 -60.62 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.90 Total: 23.39 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 5.65 Total: -30.60 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -5.74 Total: -100.03 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.46 2.84 -60.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093102911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.768 kcal (2) G-P(sol) polarization free energy of solvation -63.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds