Wall clock time and date at job start Tue Mar 31 2020 10:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47000 * 60.00482 * 8 6 4 10 10 H 1.48506 * 109.47330 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47185 * 300.00291 * 8 6 4 12 12 C 1.39674 * 120.00040 * 179.97438 * 2 1 3 13 13 C 1.38916 * 120.07159 * 179.72423 * 12 2 1 14 14 C 1.38110 * 119.91982 * 179.77154 * 13 12 2 15 15 C 1.38286 * 120.07631 * 0.50493 * 14 13 12 16 16 C 1.50693 * 119.92645 * 179.72457 * 15 14 13 17 17 N 1.46904 * 109.47328 * 270.02358 * 16 15 14 18 18 C 1.47480 * 110.99818 * 91.52380 * 17 16 15 19 19 C 1.53505 * 87.93018 * 138.70617 * 18 17 16 20 20 C 1.53004 * 114.17277 * 87.62338 * 19 18 17 21 21 C 1.53003 * 114.17291 * 220.32821 * 19 18 17 22 22 C 1.47473 * 111.00129 * 187.49452 * 17 16 15 23 23 C 1.52999 * 113.47721 * 336.06615 * 22 17 16 24 24 C 1.53009 * 113.47313 * 106.53003 * 22 17 16 25 25 C 1.38293 * 120.14766 * 359.74853 * 15 14 13 26 26 C 1.38102 * 120.07322 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07998 * 120.04002 * 0.02562 * 13 12 2 34 34 H 1.07995 * 119.95873 * 180.25408 * 14 13 12 35 35 H 1.08999 * 109.46953 * 30.02116 * 16 15 14 36 36 H 1.09000 * 109.47248 * 150.02627 * 16 15 14 37 37 H 1.09003 * 113.47720 * 253.47252 * 18 17 16 38 38 H 1.09002 * 113.48060 * 23.94032 * 18 17 16 39 39 H 1.09004 * 109.47235 * 79.50530 * 20 19 18 40 40 H 1.09001 * 109.47326 * 199.50310 * 20 19 18 41 41 H 1.09003 * 109.46996 * 319.50325 * 20 19 18 42 42 H 1.08999 * 109.47246 * 40.49260 * 21 19 18 43 43 H 1.08998 * 109.47437 * 160.49303 * 21 19 18 44 44 H 1.08995 * 109.47034 * 280.49774 * 21 19 18 45 45 H 1.08999 * 109.47494 * 79.50462 * 23 22 17 46 46 H 1.09007 * 109.46822 * 199.50177 * 23 22 17 47 47 H 1.08997 * 109.47265 * 319.50107 * 23 22 17 48 48 H 1.09002 * 109.46847 * 40.49639 * 24 22 17 49 49 H 1.09003 * 109.46835 * 160.49538 * 24 22 17 50 50 H 1.08993 * 109.47035 * 280.49519 * 24 22 17 51 51 H 1.08001 * 119.95958 * 179.97438 * 25 15 14 52 52 H 1.08005 * 120.03290 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.1407 3.5936 -4.1347 10 1 4.1805 4.7029 -3.4340 11 1 4.2414 2.3820 -4.1333 12 6 2.1634 -1.2096 0.0005 13 6 3.5525 -1.2113 -0.0052 14 6 4.2400 -2.4092 0.0001 15 6 3.5470 -3.6059 0.0006 16 6 4.3005 -4.9110 0.0002 17 7 4.5449 -5.3349 -1.3850 18 6 5.8420 -4.8291 -1.8714 19 6 6.0634 -6.1958 -2.5342 20 6 5.4860 -6.3081 -3.9467 21 6 7.4952 -6.7230 -2.4199 22 6 5.1209 -6.6917 -1.4287 23 6 5.8465 -7.0876 -0.1412 24 6 4.1322 -7.7586 -1.9036 25 6 2.1641 -3.6077 0.0011 26 6 1.4705 -2.4135 0.0015 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0943 -0.2771 -0.0098 34 1 5.3199 -2.4113 -0.0003 35 1 5.2530 -4.7807 0.5137 36 1 3.7115 -5.6707 0.5140 37 1 5.7489 -4.0104 -2.5850 38 1 6.5515 -4.6140 -1.0724 39 1 6.1629 -5.8303 -4.6549 40 1 5.3689 -7.3596 -4.2089 41 1 4.5149 -5.8143 -3.9825 42 1 7.8824 -6.5098 -1.4236 43 1 7.5005 -7.7998 -2.5890 44 1 8.1226 -6.2350 -3.1656 45 1 5.1164 -7.3924 0.6085 46 1 6.5243 -7.9163 -0.3462 47 1 6.4160 -6.2361 0.2314 48 1 3.5382 -7.3624 -2.7273 49 1 4.6809 -8.6378 -2.2414 50 1 3.4734 -8.0354 -1.0807 51 1 1.6259 -4.5441 0.0011 52 1 0.3904 -2.4156 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093508069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:33 Heat of formation + Delta-G solvation = 60.854163 kcal Electronic energy + Delta-G solvation = -27062.587254 eV Core-core repulsion = 23641.858125 eV Total energy + Delta-G solvation = -3420.729129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40189 -38.82672 -35.85461 -33.40414 -32.59390 -31.41841 -30.39509 -29.88277 -28.89076 -27.76904 -26.68376 -26.21535 -24.64445 -23.41576 -22.34269 -21.56140 -21.02293 -19.45506 -17.17185 -16.64914 -16.46100 -16.00900 -15.71867 -15.39267 -15.07365 -14.49611 -14.22150 -13.92184 -13.75716 -13.60241 -13.25271 -13.04827 -12.83738 -12.70747 -12.57757 -12.46370 -12.25163 -12.09550 -12.03460 -11.90834 -11.78532 -11.75164 -11.44020 -11.21841 -11.18489 -11.02799 -10.84741 -10.77128 -10.62934 -10.31490 -10.22454 -9.92969 -9.84871 -9.70521 -8.82830 -8.63722 -8.48348 -8.20762 -6.42123 -5.98930 -4.15298 2.16869 2.29290 3.29585 3.33482 3.37437 3.95480 4.14390 4.19471 4.43348 4.53565 4.64600 4.87143 4.97322 5.04975 5.09813 5.23156 5.24198 5.35305 5.40685 5.46813 5.51018 5.55332 5.60197 5.63761 5.66300 5.68986 5.70603 5.75886 5.82651 5.83785 5.87518 5.95489 5.99996 6.03290 6.08174 6.15592 6.18808 6.32947 6.36610 6.38296 6.47175 6.55934 6.69538 6.98768 7.08047 7.19939 7.26503 7.31251 7.40026 7.65746 7.83110 8.18152 8.30434 8.52763 8.93703 9.51379 10.97502 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.003210 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.323499 B = 8720.071244 C = 9803.161410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.617 5.617 3 C 0.250 3.750 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.240 3.760 13 C -0.187 4.187 14 C -0.066 4.066 15 C -0.160 4.160 16 C 0.076 3.924 17 N -0.450 5.450 18 C 0.007 3.993 19 C -0.086 4.086 20 C -0.120 4.120 21 C -0.136 4.136 22 C 0.052 3.948 23 C -0.156 4.156 24 C -0.126 4.126 25 C -0.056 4.056 26 C -0.221 4.221 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.055 0.945 50 H 0.050 0.950 51 H 0.106 0.894 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -21.624 0.235 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.323 5.323 3 C 0.130 3.870 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.133 3.867 13 C -0.209 4.209 14 C -0.085 4.085 15 C -0.163 4.163 16 C -0.051 4.051 17 N -0.171 5.171 18 C -0.122 4.122 19 C -0.087 4.087 20 C -0.178 4.178 21 C -0.194 4.194 22 C -0.038 4.038 23 C -0.214 4.214 24 C -0.183 4.183 25 C -0.075 4.075 26 C -0.245 4.245 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.123 0.877 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.124 0.876 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.146 -21.043 -0.032 21.277 hybrid contribution 0.850 0.462 -0.443 1.065 sum 3.997 -20.581 -0.475 20.971 Atomic orbital electron populations 1.21446 0.81552 1.00925 1.00393 1.47070 1.04336 1.04622 1.76291 1.19276 0.92039 0.78725 0.96921 1.21554 1.36309 1.06364 0.92719 0.92327 1.24954 0.95435 0.96278 0.97383 1.69918 1.38417 1.14401 1.30805 0.86587 0.78457 0.77833 0.84773 1.20225 1.21185 1.20094 1.17917 0.91453 0.85927 0.91371 1.20836 0.92701 0.98614 1.08770 1.20604 0.98281 0.91710 0.97912 1.19086 0.93455 0.93223 1.10556 1.21365 0.98485 0.95101 0.90195 1.69134 1.26117 1.02690 1.19207 1.23942 0.91386 0.97478 0.99346 1.22068 0.94797 0.96342 0.95444 1.21478 1.01448 1.01444 0.93382 1.21723 0.95056 1.00801 1.01771 1.22774 0.94057 0.92224 0.94747 1.22086 1.00613 1.01869 0.96833 1.21604 0.98330 0.96926 1.01458 1.20454 0.93232 0.96400 0.97414 1.20545 0.98936 0.91425 1.13550 0.94160 0.92849 0.92122 0.95272 0.94718 0.92622 0.85217 0.87724 0.93673 0.91143 0.89757 0.91589 0.92724 0.92618 0.91233 0.92449 0.92525 0.92424 0.92039 0.91721 0.92073 0.91393 0.92594 0.93066 0.87580 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 10.23 59.85 0.61 2.44 16 2 N -0.62 -13.56 2.99 -180.99 -0.54 -14.10 16 3 C 0.25 6.38 4.95 -5.19 -0.03 6.36 16 4 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.24 5.01 6.55 -83.79 -0.55 4.46 16 13 C -0.19 -3.89 9.21 -39.38 -0.36 -4.26 16 14 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 15 C -0.16 -2.59 5.45 -104.59 -0.57 -3.16 16 16 C 0.08 0.99 4.01 -4.98 -0.02 0.97 16 17 N -0.45 -5.68 5.88 -230.03 -1.35 -7.03 16 18 C 0.01 0.09 6.53 -7.56 -0.05 0.04 16 19 C -0.09 -0.84 1.39 -153.98 -0.21 -1.05 16 20 C -0.12 -1.16 7.91 37.16 0.29 -0.87 16 21 C -0.14 -1.10 8.26 37.16 0.31 -0.79 16 22 C 0.05 0.52 1.20 -135.33 -0.16 0.36 16 23 C -0.16 -1.35 6.49 37.16 0.24 -1.11 16 24 C -0.13 -1.17 8.44 37.16 0.31 -0.85 16 25 C -0.06 -0.92 9.69 -39.61 -0.38 -1.30 16 26 C -0.22 -4.02 9.21 -39.38 -0.36 -4.38 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.82 6.20 -51.93 -0.32 0.50 16 29 H 0.06 1.05 7.89 -51.93 -0.41 0.64 16 30 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 31 H 0.03 0.93 6.21 -51.93 -0.32 0.61 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.13 2.98 6.15 -52.49 -0.32 2.65 16 34 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.05 0.56 5.86 -51.93 -0.30 0.25 16 36 H 0.07 0.86 7.58 -51.93 -0.39 0.47 16 37 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 38 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.47 7.74 -51.93 -0.40 0.07 16 41 H 0.07 0.79 7.65 -51.93 -0.40 0.39 16 42 H 0.06 0.45 6.82 -51.93 -0.35 0.09 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.52 7.72 -51.93 -0.40 0.12 16 46 H 0.06 0.48 7.48 -51.93 -0.39 0.09 16 47 H 0.06 0.55 5.54 -51.93 -0.29 0.26 16 48 H 0.07 0.69 7.13 -51.93 -0.37 0.32 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 52 H 0.11 1.84 6.14 -52.48 -0.32 1.52 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -29.23 396.85 -11.03 -40.26 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -9.10 Total: 1.66 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.74 Total: -18.15 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -1.16 Total: -46.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.23 -11.03 -40.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093508069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.113 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds