Wall clock time and date at job start Tue Mar 31 2020 10:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47000 * 60.00482 * 8 6 4 10 10 H 1.48506 * 109.47330 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47185 * 300.00291 * 8 6 4 12 12 C 1.39674 * 120.00040 * 179.97438 * 2 1 3 13 13 C 1.38916 * 120.07159 * 179.72423 * 12 2 1 14 14 C 1.38110 * 119.91982 * 179.77154 * 13 12 2 15 15 C 1.38286 * 120.07631 * 0.50493 * 14 13 12 16 16 C 1.50693 * 119.92645 * 179.72457 * 15 14 13 17 17 N 1.46904 * 109.47328 * 270.02358 * 16 15 14 18 18 C 1.47480 * 110.99818 * 91.52380 * 17 16 15 19 19 C 1.53505 * 87.93018 * 138.70617 * 18 17 16 20 20 C 1.53004 * 114.17277 * 87.62338 * 19 18 17 21 21 C 1.53003 * 114.17291 * 220.32821 * 19 18 17 22 22 C 1.47473 * 111.00129 * 187.49452 * 17 16 15 23 23 C 1.52999 * 113.47721 * 336.06615 * 22 17 16 24 24 C 1.53009 * 113.47313 * 106.53003 * 22 17 16 25 25 C 1.38293 * 120.14766 * 359.74853 * 15 14 13 26 26 C 1.38102 * 120.07322 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07998 * 120.04002 * 0.02562 * 13 12 2 34 34 H 1.07995 * 119.95873 * 180.25408 * 14 13 12 35 35 H 1.08999 * 109.46953 * 30.02116 * 16 15 14 36 36 H 1.09000 * 109.47248 * 150.02627 * 16 15 14 37 37 H 1.09003 * 113.47720 * 253.47252 * 18 17 16 38 38 H 1.09002 * 113.48060 * 23.94032 * 18 17 16 39 39 H 1.09004 * 109.47235 * 79.50530 * 20 19 18 40 40 H 1.09001 * 109.47326 * 199.50310 * 20 19 18 41 41 H 1.09003 * 109.46996 * 319.50325 * 20 19 18 42 42 H 1.08999 * 109.47246 * 40.49260 * 21 19 18 43 43 H 1.08998 * 109.47437 * 160.49303 * 21 19 18 44 44 H 1.08995 * 109.47034 * 280.49774 * 21 19 18 45 45 H 1.08999 * 109.47494 * 79.50462 * 23 22 17 46 46 H 1.09007 * 109.46822 * 199.50177 * 23 22 17 47 47 H 1.08997 * 109.47265 * 319.50107 * 23 22 17 48 48 H 1.09002 * 109.46847 * 40.49639 * 24 22 17 49 49 H 1.09003 * 109.46835 * 160.49538 * 24 22 17 50 50 H 1.08993 * 109.47035 * 280.49519 * 24 22 17 51 51 H 1.08001 * 119.95958 * 179.97438 * 25 15 14 52 52 H 1.08005 * 120.03290 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.1407 3.5936 -4.1347 10 1 4.1805 4.7029 -3.4340 11 1 4.2414 2.3820 -4.1333 12 6 2.1634 -1.2096 0.0005 13 6 3.5525 -1.2113 -0.0052 14 6 4.2400 -2.4092 0.0001 15 6 3.5470 -3.6059 0.0006 16 6 4.3005 -4.9110 0.0002 17 7 4.5449 -5.3349 -1.3850 18 6 5.8420 -4.8291 -1.8714 19 6 6.0634 -6.1958 -2.5342 20 6 5.4860 -6.3081 -3.9467 21 6 7.4952 -6.7230 -2.4199 22 6 5.1209 -6.6917 -1.4287 23 6 5.8465 -7.0876 -0.1412 24 6 4.1322 -7.7586 -1.9036 25 6 2.1641 -3.6077 0.0011 26 6 1.4705 -2.4135 0.0015 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0943 -0.2771 -0.0098 34 1 5.3199 -2.4113 -0.0003 35 1 5.2530 -4.7807 0.5137 36 1 3.7115 -5.6707 0.5140 37 1 5.7489 -4.0104 -2.5850 38 1 6.5515 -4.6140 -1.0724 39 1 6.1629 -5.8303 -4.6549 40 1 5.3689 -7.3596 -4.2089 41 1 4.5149 -5.8143 -3.9825 42 1 7.8824 -6.5098 -1.4236 43 1 7.5005 -7.7998 -2.5890 44 1 8.1226 -6.2350 -3.1656 45 1 5.1164 -7.3924 0.6085 46 1 6.5243 -7.9163 -0.3462 47 1 6.4160 -6.2361 0.2314 48 1 3.5382 -7.3624 -2.7273 49 1 4.6809 -8.6378 -2.2414 50 1 3.4734 -8.0354 -1.0807 51 1 1.6259 -4.5441 0.0011 52 1 0.3904 -2.4156 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093508069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:32 Heat of formation + Delta-G solvation = 45.464491 kcal Electronic energy + Delta-G solvation = -27063.254600 eV Core-core repulsion = 23641.858125 eV Total energy + Delta-G solvation = -3421.396475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26114 -40.30943 -37.41178 -34.93582 -34.15935 -32.21729 -31.88783 -31.14530 -29.66443 -29.55465 -27.91708 -26.91196 -26.27386 -24.76043 -23.62172 -23.00617 -22.14891 -20.88583 -18.66211 -18.12671 -17.95126 -17.06567 -16.68199 -16.59051 -16.48151 -16.03722 -15.56310 -15.34523 -14.93516 -14.78339 -14.44007 -14.37728 -14.24552 -14.03290 -13.57607 -13.32456 -13.25997 -13.18795 -13.13684 -13.05269 -13.04816 -12.77777 -12.71095 -12.61030 -12.54084 -12.49558 -12.29949 -12.05711 -11.85149 -11.77714 -11.74413 -11.37208 -11.21036 -10.71104 -10.65481 -10.35080 -9.68143 -9.60399 -8.37244 -7.80406 -6.39003 0.69832 0.85005 1.35110 1.37229 1.45568 2.32891 2.62474 2.96000 3.04345 3.27650 3.38825 3.78564 3.96547 4.10126 4.16641 4.18939 4.25333 4.31030 4.34864 4.42140 4.46323 4.59440 4.65042 4.69308 4.71333 4.74424 4.84410 4.86090 4.86786 4.89679 4.94776 4.95999 4.97839 4.99977 5.10159 5.12256 5.14508 5.16778 5.21024 5.24115 5.31875 5.35591 5.44237 5.54044 5.60123 5.65896 5.67792 5.71065 5.96267 6.06105 6.19193 6.32639 6.48904 6.81277 6.92792 7.32787 8.81623 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.003210 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.323499 B = 8720.071244 C = 9803.161410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.633 5.633 3 C 0.268 3.732 4 C -0.544 4.544 5 H 0.046 0.954 6 C 0.014 3.986 7 N -0.926 5.926 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.211 3.789 13 C -0.215 4.215 14 C -0.068 4.068 15 C -0.148 4.148 16 C 0.081 3.919 17 N -0.470 5.470 18 C 0.001 3.999 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.133 4.133 22 C 0.056 3.944 23 C -0.153 4.153 24 C -0.124 4.124 25 C -0.054 4.054 26 C -0.216 4.216 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.268 0.732 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.053 0.947 51 H 0.138 0.862 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -24.791 -0.383 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.341 5.341 3 C 0.146 3.854 4 C -0.583 4.583 5 H 0.065 0.935 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.107 3.893 13 C -0.238 4.238 14 C -0.087 4.087 15 C -0.151 4.151 16 C -0.046 4.046 17 N -0.192 5.192 18 C -0.128 4.128 19 C -0.080 4.080 20 C -0.176 4.176 21 C -0.190 4.190 22 C -0.034 4.034 23 C -0.212 4.212 24 C -0.182 4.182 25 C -0.073 4.073 26 C -0.239 4.239 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.155 0.845 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.263 -24.249 -0.647 24.476 hybrid contribution 0.847 1.324 -0.236 1.589 sum 4.110 -22.925 -0.883 23.307 Atomic orbital electron populations 1.21584 0.79417 1.02570 1.00709 1.46949 1.05615 1.03707 1.77838 1.18773 0.91056 0.80209 0.95341 1.21749 1.36561 1.06554 0.93388 0.93546 1.25767 0.95021 0.96253 1.01525 1.70021 1.38909 1.14798 1.32840 0.85578 0.78606 0.77588 0.79738 1.19337 1.20102 1.20011 1.18178 0.91561 0.86484 0.93101 1.20740 0.93258 0.98370 1.11386 1.20751 0.98984 0.91420 0.97570 1.19489 0.93845 0.94024 1.07731 1.21344 0.98693 0.93551 0.91047 1.69083 1.26882 1.04598 1.18650 1.23975 0.91492 0.98007 0.99360 1.22056 0.96008 0.94682 0.95253 1.21455 1.00317 1.02184 0.93604 1.21704 0.93608 1.01592 1.02096 1.22849 0.94093 0.90974 0.95464 1.22079 1.00823 1.02270 0.95987 1.21601 0.98259 0.97165 1.01136 1.20844 0.93479 0.97010 0.95969 1.20793 1.00006 0.90726 1.12370 0.94403 0.89763 0.91931 0.97153 0.97216 0.92323 0.88801 0.86570 0.92824 0.89613 0.92217 0.91103 0.92568 0.91060 0.93337 0.92061 0.91092 0.92352 0.91596 0.90098 0.92521 0.92621 0.90863 0.92764 0.84462 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.63 10.23 127.77 1.31 4.93 16 2 N -0.63 -28.82 2.99 -726.54 -2.17 -30.99 16 3 C 0.27 14.50 4.95 85.63 0.42 14.92 16 4 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 5 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 6 C 0.01 0.78 5.46 84.65 0.46 1.25 16 7 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 8 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.21 9.03 6.55 38.21 0.25 9.29 16 13 C -0.21 -9.43 9.21 22.40 0.21 -9.22 16 14 C -0.07 -2.45 9.69 22.25 0.22 -2.24 16 15 C -0.15 -4.58 5.45 -19.84 -0.11 -4.69 16 16 C 0.08 1.93 4.01 85.55 0.34 2.27 16 17 N -0.47 -11.00 5.88 -881.68 -5.19 -16.19 16 18 C 0.00 0.02 6.53 83.57 0.55 0.56 16 19 C -0.08 -1.39 1.39 -51.84 -0.07 -1.46 16 20 C -0.12 -2.11 7.91 71.98 0.57 -1.54 16 21 C -0.13 -1.77 8.26 71.98 0.59 -1.18 16 22 C 0.06 0.97 1.20 0.80 0.00 0.97 16 23 C -0.15 -2.14 6.49 71.98 0.47 -1.67 16 24 C -0.12 -1.94 8.44 71.99 0.61 -1.33 16 25 C -0.05 -1.66 9.69 22.25 0.22 -1.44 16 26 C -0.22 -7.58 9.21 22.40 0.21 -7.37 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 2.48 6.20 -2.39 -0.01 2.46 16 29 H 0.06 2.19 7.89 -2.39 -0.02 2.17 16 30 H 0.01 0.59 7.89 -2.38 -0.02 0.57 16 31 H 0.01 0.58 6.21 -2.39 -0.01 0.56 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.09 4.72 6.15 -2.91 -0.02 4.71 16 34 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.05 1.19 5.86 -2.39 -0.01 1.18 16 36 H 0.09 1.80 7.58 -2.39 -0.02 1.78 16 37 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 38 H 0.07 1.52 6.56 -2.39 -0.02 1.50 16 39 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.07 1.03 7.74 -2.39 -0.02 1.01 16 41 H 0.05 1.06 7.65 -2.39 -0.02 1.05 16 42 H 0.06 0.78 6.82 -2.39 -0.02 0.77 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.88 7.72 -2.39 -0.02 0.86 16 46 H 0.08 0.89 7.48 -2.38 -0.02 0.87 16 47 H 0.06 0.85 5.54 -2.39 -0.01 0.84 16 48 H 0.05 1.01 7.13 -2.39 -0.02 1.00 16 49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 52 H 0.13 4.02 6.14 -2.91 -0.02 4.00 16 Total: -1.00 -65.35 396.85 2.30 -63.05 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.87 Total: 21.25 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 6.48 Total: -29.24 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -7.07 Total: -102.17 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.35 2.30 -63.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093508069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.513 kcal (2) G-P(sol) polarization free energy of solvation -65.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds