Wall clock time and date at job start Tue Mar 31 2020 11:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46632 * 2 1 4 4 N 1.46893 * 109.47160 * 119.99457 * 2 1 3 5 5 C 1.46909 * 111.00116 * 64.23441 * 4 2 1 6 6 C 1.50702 * 109.46734 * 59.27209 * 5 4 2 7 7 C 1.38287 * 119.92687 * 264.33050 * 6 5 4 8 8 C 1.38109 * 120.07538 * 179.72552 * 7 6 5 9 9 C 1.38911 * 119.91894 * 0.54706 * 8 7 6 10 10 N 1.39679 * 120.07158 * 179.74488 * 9 8 7 11 11 C 1.46496 * 120.00150 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99769 * 359.97438 * 10 9 8 13 13 C 1.50706 * 109.47190 * 89.99869 * 12 10 9 14 14 H 1.08002 * 119.99731 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00100 * 179.97438 * 13 12 10 16 16 N 1.31513 * 119.99800 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47470 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47150 * 120.00189 * 17 15 13 20 20 H 1.48503 * 109.46774 * 239.99853 * 17 15 13 21 21 C 1.38912 * 119.85735 * 359.72667 * 9 8 7 22 22 C 1.38100 * 119.92135 * 359.97438 * 21 9 8 23 23 C 1.46901 * 111.00424 * 188.18955 * 4 2 1 24 24 C 1.53773 * 113.61812 * 180.02562 * 23 4 2 25 25 C 1.53783 * 87.07997 * 219.93522 * 24 23 4 26 26 C 1.53775 * 87.08145 * 25.42943 * 25 24 23 27 27 H 1.08993 * 109.47333 * 297.83930 * 1 2 3 28 28 H 1.08998 * 109.46870 * 57.84596 * 1 2 3 29 29 H 1.09005 * 109.46716 * 177.83533 * 1 2 3 30 30 H 1.08997 * 109.47295 * 240.00290 * 2 1 3 31 31 H 1.09003 * 109.46706 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47042 * 299.99517 * 3 2 1 33 33 H 1.09000 * 109.47570 * 59.99601 * 3 2 1 34 34 H 1.08995 * 109.47352 * 179.27135 * 5 4 2 35 35 H 1.09002 * 109.46694 * 299.27790 * 5 4 2 36 36 H 1.07993 * 119.96207 * 359.97438 * 7 6 5 37 37 H 1.07994 * 120.03493 * 180.27449 * 8 7 6 38 38 H 1.09002 * 109.46950 * 90.00495 * 11 10 9 39 39 H 1.08999 * 109.47467 * 210.00682 * 11 10 9 40 40 H 1.08996 * 109.47106 * 330.00574 * 11 10 9 41 41 H 1.08997 * 109.47194 * 209.99214 * 12 10 9 42 42 H 1.08992 * 109.47208 * 330.00110 * 12 10 9 43 43 H 0.96998 * 119.99837 * 179.97438 * 16 15 13 44 44 H 1.07994 * 120.03723 * 179.97438 * 21 9 8 45 45 H 1.07997 * 119.96300 * 179.97438 * 22 21 9 46 46 H 1.09004 * 112.84400 * 311.20133 * 23 4 2 47 47 H 1.08994 * 113.61863 * 105.38598 * 24 23 4 48 48 H 1.09001 * 113.69312 * 334.48909 * 24 23 4 49 49 H 1.08997 * 113.61775 * 139.97995 * 25 24 23 50 50 H 1.09008 * 113.61401 * 270.87892 * 25 24 23 51 51 H 1.09002 * 113.61486 * 89.11876 * 26 25 24 52 52 H 1.09005 * 113.61702 * 220.02202 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6923 1.1994 5 6 1.6331 -2.1096 1.1840 6 6 2.2054 -2.7729 -0.0422 7 6 1.4315 -2.9035 -1.1807 8 6 1.9547 -3.5058 -2.3080 9 6 3.2563 -3.9909 -2.2935 10 7 3.7869 -4.6055 -3.4301 11 6 5.1599 -5.1160 -3.4132 12 6 2.9704 -4.7394 -4.6390 13 6 3.1640 -3.5269 -5.5129 14 1 3.8284 -2.7355 -5.1988 15 6 2.4928 -3.4279 -6.7132 16 7 1.6841 -4.3918 -7.0958 17 14 2.7333 -1.9253 -7.7966 18 1 3.6876 -0.9927 -7.1448 19 1 3.2736 -2.3463 -9.1141 20 1 1.4293 -1.2420 -7.9918 21 6 4.0292 -3.8633 -1.1463 22 6 3.5017 -3.2544 -0.0246 23 6 3.4750 -0.5451 1.3352 24 6 4.0526 -1.2494 2.5741 25 6 4.9706 -0.0274 2.7436 26 6 3.9039 0.7805 1.9859 27 1 -0.3633 0.4799 0.9087 28 1 -0.3633 0.5469 -0.8700 29 1 -0.3633 -1.0270 -0.0388 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9565 0.8899 34 1 2.0193 -2.6013 2.0768 35 1 0.5462 -2.1895 1.1664 36 1 0.4181 -2.5304 -1.1897 37 1 1.3512 -3.6034 -3.1983 38 1 5.1579 -6.1529 -3.0769 39 1 5.5806 -5.0605 -4.4172 40 1 5.7629 -4.5146 -2.7329 41 1 3.2734 -5.6327 -5.1850 42 1 1.9199 -4.8225 -4.3606 43 1 1.2116 -4.3220 -7.9400 44 1 5.0412 -4.2398 -1.1316 45 1 4.1018 -3.1551 0.8678 46 1 4.0111 -0.7732 0.4139 47 1 4.5889 -2.1697 2.3429 48 1 3.3333 -1.3708 3.3841 49 1 5.0981 0.2825 3.7808 50 1 5.9158 -0.1136 2.2074 51 1 3.1430 1.2150 2.6342 52 1 4.3202 1.4990 1.2797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093608369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:29 Heat of formation + Delta-G solvation = 56.396047 kcal Electronic energy + Delta-G solvation = -27731.187837 eV Core-core repulsion = 24310.265390 eV Total energy + Delta-G solvation = -3420.922447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19327 -38.62341 -36.50431 -35.24715 -32.80601 -31.96747 -30.48805 -29.22707 -27.91927 -27.60368 -25.72532 -25.38009 -24.48048 -23.52855 -22.36481 -21.50144 -20.02169 -19.56169 -19.03304 -16.69321 -16.47047 -16.31019 -15.73167 -15.31464 -15.18574 -14.63465 -14.47485 -14.11019 -13.74730 -13.62471 -13.30441 -13.01497 -12.82773 -12.58105 -12.36763 -12.20665 -12.12361 -12.05964 -11.79394 -11.70234 -11.48264 -11.41785 -11.28015 -11.23744 -10.96343 -10.87414 -10.82390 -10.72426 -10.54194 -10.28799 -10.25448 -10.04963 -9.84619 -9.76211 -8.82853 -8.54089 -8.29120 -8.13932 -6.49088 -6.04708 -4.20681 2.07077 2.20481 3.22528 3.30818 3.35565 4.06888 4.12135 4.38229 4.50639 4.62971 4.70888 4.85881 4.91382 5.08833 5.17793 5.18472 5.34319 5.42330 5.49122 5.54726 5.60629 5.65984 5.70288 5.76135 5.78173 5.78783 5.84153 5.89081 5.93703 5.96900 5.97087 6.03017 6.06251 6.12863 6.24462 6.26463 6.29671 6.34690 6.40785 6.42625 6.49411 6.61988 6.91789 6.99875 7.14147 7.20433 7.27166 7.31361 7.40684 7.57815 7.77931 8.12259 8.23539 8.45736 8.88594 9.46362 10.92478 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003795 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.657686 B = 7376.390417 C = 8132.588451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 C -0.150 4.150 4 N -0.515 5.515 5 C 0.104 3.896 6 C -0.206 4.206 7 C -0.063 4.063 8 C -0.188 4.188 9 C 0.241 3.759 10 N -0.615 5.615 11 C 0.099 3.901 12 C 0.249 3.751 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.223 4.223 22 C -0.066 4.066 23 C 0.059 3.941 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.126 4.126 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 6.555 17.985 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.208 4.208 4 N -0.238 5.238 5 C -0.023 4.023 6 C -0.210 4.210 7 C -0.082 4.082 8 C -0.210 4.210 9 C 0.134 3.866 10 N -0.321 5.321 11 C -0.045 4.045 12 C 0.129 3.871 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.246 4.246 22 C -0.086 4.086 23 C -0.049 4.049 24 C -0.169 4.169 25 C -0.184 4.184 26 C -0.164 4.164 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.321 6.618 18.032 19.348 hybrid contribution 0.530 0.335 -1.677 1.790 sum 2.851 6.953 16.355 17.999 Atomic orbital electron populations 1.21846 0.94780 1.01844 1.01515 1.21611 0.95317 0.94490 0.92348 1.22070 1.01488 0.95772 1.01428 1.62778 1.11290 1.11629 1.38075 1.20983 0.99803 0.86689 0.94872 1.20003 0.95867 1.07724 0.97366 1.20729 0.98382 0.96856 0.92268 1.20885 0.95366 1.05061 0.99733 1.17957 0.92153 0.89962 0.86525 1.47101 1.13023 1.60059 1.11913 1.21464 0.83948 0.97105 1.02026 1.19283 0.90707 0.96888 0.80197 1.21607 1.26798 1.04918 1.03642 0.92281 1.24957 0.94948 0.96493 0.97628 1.69938 1.28507 1.32412 1.22485 0.86483 0.78128 0.82855 0.80275 1.19758 1.20896 1.20800 1.20559 1.00139 1.10023 0.93859 1.20638 0.94606 0.96442 0.96885 1.23059 0.88329 0.96671 0.96868 1.23039 0.98518 0.97110 0.98268 1.22766 0.97545 0.97565 1.00515 1.23140 0.97913 0.96169 0.99134 0.92368 0.92579 0.92536 0.92661 0.92101 0.92828 0.92330 0.90878 0.90673 0.87259 0.85190 0.94623 0.91461 0.92768 0.95221 0.94661 0.92679 0.87073 0.87332 0.91281 0.91740 0.89581 0.91560 0.90525 0.89525 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.00 37.16 0.33 -1.32 16 2 C 0.07 0.90 2.26 -67.71 -0.15 0.74 16 3 C -0.15 -1.72 7.99 37.16 0.30 -1.42 16 4 N -0.51 -6.21 4.58 -219.18 -1.00 -7.21 16 5 C 0.10 1.30 5.06 -4.97 -0.03 1.28 16 6 C -0.21 -3.10 4.07 -104.58 -0.43 -3.52 16 7 C -0.06 -1.06 8.20 -39.61 -0.32 -1.39 16 8 C -0.19 -3.79 9.21 -39.38 -0.36 -4.15 16 9 C 0.24 4.87 6.55 -83.78 -0.55 4.33 16 10 N -0.62 -13.19 2.99 -181.00 -0.54 -13.74 16 11 C 0.10 1.74 10.19 59.84 0.61 2.35 16 12 C 0.25 6.25 4.91 -5.19 -0.03 6.22 16 13 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C -0.22 -3.86 9.21 -39.38 -0.36 -4.23 16 22 C -0.07 -1.02 8.09 -39.61 -0.32 -1.34 16 23 C 0.06 0.68 1.46 -66.91 -0.10 0.58 16 24 C -0.13 -1.31 6.09 -25.92 -0.16 -1.47 16 25 C -0.15 -1.32 8.08 -25.92 -0.21 -1.53 16 26 C -0.13 -1.25 5.73 -25.92 -0.15 -1.39 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.66 5.31 -51.93 -0.28 0.39 16 30 H 0.06 0.87 6.02 -51.93 -0.31 0.55 16 31 H 0.06 0.70 5.00 -51.93 -0.26 0.44 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.07 0.86 6.86 -51.93 -0.36 0.50 16 35 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 36 H 0.11 1.68 6.72 -52.49 -0.35 1.33 16 37 H 0.13 2.91 6.14 -52.49 -0.32 2.59 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 41 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 42 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.11 1.76 6.14 -52.49 -0.32 1.44 16 45 H 0.11 1.44 5.52 -52.49 -0.29 1.15 16 46 H 0.07 0.96 7.11 -51.93 -0.37 0.59 16 47 H 0.06 0.64 6.36 -51.93 -0.33 0.31 16 48 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 51 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 52 H 0.06 0.62 6.75 -51.93 -0.35 0.27 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -28.00 384.59 -11.06 -39.06 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.69 Total: 4.11 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -2.34 Total: -19.44 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.81 Total: -45.79 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.00 -11.06 -39.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093608369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.455 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds