Wall clock time and date at job start Tue Mar 31 2020 11:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46632 * 2 1 4 4 N 1.46893 * 109.47160 * 119.99457 * 2 1 3 5 5 C 1.46909 * 111.00116 * 64.23441 * 4 2 1 6 6 C 1.50702 * 109.46734 * 59.27209 * 5 4 2 7 7 C 1.38287 * 119.92687 * 264.33050 * 6 5 4 8 8 C 1.38109 * 120.07538 * 179.72552 * 7 6 5 9 9 C 1.38911 * 119.91894 * 0.54706 * 8 7 6 10 10 N 1.39679 * 120.07158 * 179.74488 * 9 8 7 11 11 C 1.46496 * 120.00150 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99769 * 359.97438 * 10 9 8 13 13 C 1.50706 * 109.47190 * 89.99869 * 12 10 9 14 14 H 1.08002 * 119.99731 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00100 * 179.97438 * 13 12 10 16 16 N 1.31513 * 119.99800 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47470 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47150 * 120.00189 * 17 15 13 20 20 H 1.48503 * 109.46774 * 239.99853 * 17 15 13 21 21 C 1.38912 * 119.85735 * 359.72667 * 9 8 7 22 22 C 1.38100 * 119.92135 * 359.97438 * 21 9 8 23 23 C 1.46901 * 111.00424 * 188.18955 * 4 2 1 24 24 C 1.53773 * 113.61812 * 180.02562 * 23 4 2 25 25 C 1.53783 * 87.07997 * 219.93522 * 24 23 4 26 26 C 1.53775 * 87.08145 * 25.42943 * 25 24 23 27 27 H 1.08993 * 109.47333 * 297.83930 * 1 2 3 28 28 H 1.08998 * 109.46870 * 57.84596 * 1 2 3 29 29 H 1.09005 * 109.46716 * 177.83533 * 1 2 3 30 30 H 1.08997 * 109.47295 * 240.00290 * 2 1 3 31 31 H 1.09003 * 109.46706 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47042 * 299.99517 * 3 2 1 33 33 H 1.09000 * 109.47570 * 59.99601 * 3 2 1 34 34 H 1.08995 * 109.47352 * 179.27135 * 5 4 2 35 35 H 1.09002 * 109.46694 * 299.27790 * 5 4 2 36 36 H 1.07993 * 119.96207 * 359.97438 * 7 6 5 37 37 H 1.07994 * 120.03493 * 180.27449 * 8 7 6 38 38 H 1.09002 * 109.46950 * 90.00495 * 11 10 9 39 39 H 1.08999 * 109.47467 * 210.00682 * 11 10 9 40 40 H 1.08996 * 109.47106 * 330.00574 * 11 10 9 41 41 H 1.08997 * 109.47194 * 209.99214 * 12 10 9 42 42 H 1.08992 * 109.47208 * 330.00110 * 12 10 9 43 43 H 0.96998 * 119.99837 * 179.97438 * 16 15 13 44 44 H 1.07994 * 120.03723 * 179.97438 * 21 9 8 45 45 H 1.07997 * 119.96300 * 179.97438 * 22 21 9 46 46 H 1.09004 * 112.84400 * 311.20133 * 23 4 2 47 47 H 1.08994 * 113.61863 * 105.38598 * 24 23 4 48 48 H 1.09001 * 113.69312 * 334.48909 * 24 23 4 49 49 H 1.08997 * 113.61775 * 139.97995 * 25 24 23 50 50 H 1.09008 * 113.61401 * 270.87892 * 25 24 23 51 51 H 1.09002 * 113.61486 * 89.11876 * 26 25 24 52 52 H 1.09005 * 113.61702 * 220.02202 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6923 1.1994 5 6 1.6331 -2.1096 1.1840 6 6 2.2054 -2.7729 -0.0422 7 6 1.4315 -2.9035 -1.1807 8 6 1.9547 -3.5058 -2.3080 9 6 3.2563 -3.9909 -2.2935 10 7 3.7869 -4.6055 -3.4301 11 6 5.1599 -5.1160 -3.4132 12 6 2.9704 -4.7394 -4.6390 13 6 3.1640 -3.5269 -5.5129 14 1 3.8284 -2.7355 -5.1988 15 6 2.4928 -3.4279 -6.7132 16 7 1.6841 -4.3918 -7.0958 17 14 2.7333 -1.9253 -7.7966 18 1 3.6876 -0.9927 -7.1448 19 1 3.2736 -2.3463 -9.1141 20 1 1.4293 -1.2420 -7.9918 21 6 4.0292 -3.8633 -1.1463 22 6 3.5017 -3.2544 -0.0246 23 6 3.4750 -0.5451 1.3352 24 6 4.0526 -1.2494 2.5741 25 6 4.9706 -0.0274 2.7436 26 6 3.9039 0.7805 1.9859 27 1 -0.3633 0.4799 0.9087 28 1 -0.3633 0.5469 -0.8700 29 1 -0.3633 -1.0270 -0.0388 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9565 0.8899 34 1 2.0193 -2.6013 2.0768 35 1 0.5462 -2.1895 1.1664 36 1 0.4181 -2.5304 -1.1897 37 1 1.3512 -3.6034 -3.1983 38 1 5.1579 -6.1529 -3.0769 39 1 5.5806 -5.0605 -4.4172 40 1 5.7629 -4.5146 -2.7329 41 1 3.2734 -5.6327 -5.1850 42 1 1.9199 -4.8225 -4.3606 43 1 1.2116 -4.3220 -7.9400 44 1 5.0412 -4.2398 -1.1316 45 1 4.1018 -3.1551 0.8678 46 1 4.0111 -0.7732 0.4139 47 1 4.5889 -2.1697 2.3429 48 1 3.3333 -1.3708 3.3841 49 1 5.0981 0.2825 3.7808 50 1 5.9158 -0.1136 2.2074 51 1 3.1430 1.2150 2.6342 52 1 4.3202 1.4990 1.2797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093608369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:28 Heat of formation + Delta-G solvation = 42.865575 kcal Electronic energy + Delta-G solvation = -27731.774563 eV Core-core repulsion = 24310.265390 eV Total energy + Delta-G solvation = -3421.509173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27030 -39.90904 -37.68067 -36.55239 -34.80236 -33.13605 -31.94618 -30.48031 -29.69213 -28.63361 -27.08422 -26.20598 -25.90298 -24.64813 -23.84043 -22.95012 -21.36837 -20.58737 -20.00206 -18.67613 -18.10468 -17.24692 -16.91683 -16.66706 -16.41209 -16.08588 -15.88037 -15.39278 -15.24540 -14.86946 -14.55808 -14.28702 -14.16665 -14.06788 -13.55081 -13.31420 -13.27093 -13.14511 -13.08527 -12.95075 -12.88783 -12.75666 -12.62973 -12.57731 -12.45780 -12.29910 -12.16680 -11.92701 -11.77157 -11.71795 -11.54139 -11.28768 -11.09495 -10.84004 -10.67968 -10.38659 -9.69305 -9.19789 -8.39420 -7.83129 -6.41087 0.65791 0.81040 1.32660 1.34333 1.46368 2.30908 2.59609 2.98048 3.02720 3.22915 3.79164 3.90129 3.97184 4.05462 4.08517 4.14496 4.19160 4.23239 4.30033 4.38806 4.48634 4.56782 4.59892 4.66161 4.75089 4.80717 4.85539 4.87114 4.90952 4.94105 4.95406 4.99412 5.01725 5.06100 5.11506 5.13205 5.16309 5.18120 5.21065 5.29201 5.40663 5.41438 5.51030 5.55524 5.59916 5.65724 5.66616 5.87427 6.03515 6.17333 6.26242 6.38286 6.46318 6.79041 6.89751 7.30931 8.80023 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003795 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.657686 B = 7376.390417 C = 8132.588451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 C -0.145 4.145 4 N -0.505 5.505 5 C 0.105 3.895 6 C -0.188 4.188 7 C -0.062 4.062 8 C -0.216 4.216 9 C 0.213 3.787 10 N -0.632 5.632 11 C 0.099 3.901 12 C 0.268 3.732 13 C -0.541 4.541 14 H 0.047 0.953 15 C 0.014 3.986 16 N -0.925 5.925 17 Si 0.960 3.040 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.276 1.276 21 C -0.219 4.219 22 C -0.060 4.060 23 C 0.050 3.950 24 C -0.127 4.127 25 C -0.139 4.139 26 C -0.121 4.121 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.021 0.979 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.268 0.732 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.044 0.956 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 8.120 20.681 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 C -0.203 4.203 4 N -0.227 5.227 5 C -0.022 4.022 6 C -0.192 4.192 7 C -0.081 4.081 8 C -0.239 4.239 9 C 0.108 3.892 10 N -0.340 5.340 11 C -0.044 4.044 12 C 0.146 3.854 13 C -0.580 4.580 14 H 0.065 0.935 15 C -0.185 4.185 16 N -0.565 5.565 17 Si 0.785 3.215 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.202 1.202 21 C -0.241 4.241 22 C -0.079 4.079 23 C -0.059 4.059 24 C -0.164 4.164 25 C -0.177 4.177 26 C -0.158 4.158 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.157 0.843 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.111 0.889 49 H 0.099 0.901 50 H 0.096 0.904 51 H 0.108 0.892 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.268 8.190 20.765 22.559 hybrid contribution 0.209 -0.111 -2.393 2.405 sum 3.477 8.079 18.372 20.369 Atomic orbital electron populations 1.21815 0.93939 1.01764 1.02127 1.21599 0.96038 0.95030 0.91209 1.22024 1.01337 0.94909 1.01984 1.62850 1.11835 1.10875 1.37173 1.21081 1.00245 0.86907 0.93972 1.20346 0.95550 1.05846 0.97500 1.20854 0.99144 0.96168 0.91970 1.20771 0.95812 1.07602 0.99746 1.18213 0.92634 0.91195 0.87190 1.46963 1.14069 1.61698 1.11245 1.21588 0.82300 0.98413 1.02126 1.18758 0.90004 0.95220 0.81423 1.21776 1.26596 1.05258 1.04338 0.93506 1.25761 0.94538 0.99311 0.98917 1.70039 1.29235 1.34171 1.23085 0.85474 0.78156 0.79267 0.78594 1.19665 1.19778 1.20182 1.20793 1.00644 1.09561 0.93139 1.20988 0.94788 0.94922 0.97181 1.23129 0.87511 0.98605 0.96638 1.23036 0.98656 0.97436 0.97291 1.22740 0.97117 0.96566 1.01238 1.23101 0.98277 0.95436 0.99027 0.91130 0.92624 0.92924 0.96085 0.92307 0.92931 0.91080 0.89025 0.90059 0.86259 0.88903 0.92899 0.92517 0.90513 0.97289 0.97224 0.92335 0.85215 0.84343 0.93765 0.91520 0.88861 0.90126 0.90416 0.89152 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.00 71.98 0.65 -2.39 16 2 C 0.07 1.69 2.26 44.92 0.10 1.79 16 3 C -0.15 -3.10 7.99 71.98 0.57 -2.53 16 4 N -0.50 -11.00 4.58 -847.35 -3.88 -14.87 16 5 C 0.11 2.37 5.06 85.56 0.43 2.81 16 6 C -0.19 -5.43 4.07 -19.84 -0.08 -5.51 16 7 C -0.06 -2.14 8.20 22.25 0.18 -1.96 16 8 C -0.22 -9.23 9.21 22.40 0.21 -9.03 16 9 C 0.21 8.84 6.55 38.21 0.25 9.09 16 10 N -0.63 -28.19 2.99 -726.57 -2.17 -30.37 16 11 C 0.10 3.50 10.19 127.77 1.30 4.80 16 12 C 0.27 14.29 4.91 85.63 0.42 14.71 16 13 C -0.54 -30.84 9.39 25.60 0.24 -30.60 16 14 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 15 C 0.01 0.80 5.46 84.65 0.46 1.26 16 16 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 17 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.22 -7.35 9.21 22.40 0.21 -7.15 16 22 C -0.06 -1.71 8.09 22.25 0.18 -1.53 16 23 C 0.05 1.02 1.46 45.44 0.07 1.09 16 24 C -0.13 -2.07 6.09 31.12 0.19 -1.88 16 25 C -0.14 -2.04 8.08 31.12 0.25 -1.79 16 26 C -0.12 -2.06 5.73 31.12 0.18 -1.88 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.17 5.31 -2.38 -0.01 1.16 16 30 H 0.02 0.66 6.02 -2.39 -0.01 0.65 16 31 H 0.06 1.27 5.00 -2.39 -0.01 1.26 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 34 H 0.09 1.79 6.86 -2.39 -0.02 1.78 16 35 H 0.08 1.78 6.40 -2.39 -0.02 1.77 16 36 H 0.12 3.76 6.72 -2.91 -0.02 3.74 16 37 H 0.09 4.59 6.14 -2.91 -0.02 4.57 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 40 H 0.08 2.32 6.20 -2.39 -0.01 2.31 16 41 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 42 H 0.01 0.56 6.20 -2.39 -0.01 0.55 16 43 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.13 3.82 6.14 -2.91 -0.02 3.80 16 45 H 0.14 3.16 5.52 -2.91 -0.02 3.15 16 46 H 0.04 1.16 7.11 -2.39 -0.02 1.14 16 47 H 0.07 1.07 6.36 -2.39 -0.02 1.05 16 48 H 0.09 1.44 7.91 -2.39 -0.02 1.42 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.09 1.51 8.13 -2.39 -0.02 1.49 16 52 H 0.06 1.08 6.75 -2.38 -0.02 1.07 16 Total: -1.00 -62.83 384.59 2.97 -59.86 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.89 Total: 23.93 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 5.81 Total: -30.68 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -5.77 Total: -99.68 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.83 2.97 -59.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093608369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.730 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds