Wall clock time and date at job start Tue Mar 31 2020 10:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38305 * 119.95664 * 2 1 4 4 C 1.38271 * 120.14666 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07353 * 359.97438 * 4 3 2 6 6 C 1.38889 * 119.92353 * 0.02562 * 5 4 3 7 7 N 1.39676 * 120.07164 * 180.02562 * 6 5 4 8 8 C 1.46952 * 111.00139 * 123.79542 * 7 6 5 9 9 C 1.53055 * 109.36722 * 176.80965 * 8 7 6 10 10 N 1.46955 * 109.36226 * 58.39960 * 9 8 7 11 11 C 1.46907 * 110.99900 * 176.81325 * 10 9 8 12 12 C 1.53001 * 109.46828 * 210.55469 * 11 10 9 13 13 C 1.52995 * 109.47237 * 294.50229 * 12 11 10 14 14 C 1.52997 * 109.46980 * 54.50774 * 12 11 10 15 15 C 1.53005 * 109.46559 * 174.50357 * 12 11 10 16 16 C 1.50705 * 109.46789 * 180.02562 * 15 12 11 17 17 H 1.07993 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99703 * 180.02562 * 16 15 12 19 19 N 1.31510 * 120.00015 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99633 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47295 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47335 * 120.00274 * 20 18 16 23 23 H 1.48507 * 109.47049 * 239.99855 * 20 18 16 24 24 C 1.46960 * 110.88132 * 300.67974 * 10 9 8 25 25 C 1.46955 * 110.99993 * 359.97438 * 7 6 5 26 26 C 1.38073 * 119.96500 * 179.72514 * 2 1 3 27 27 H 1.08999 * 109.47202 * 90.00166 * 1 2 3 28 28 H 1.08999 * 109.46429 * 210.00108 * 1 2 3 29 29 H 1.08995 * 109.47228 * 329.99745 * 1 2 3 30 30 H 1.08000 * 119.93198 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.95982 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.03779 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.49319 * 296.77775 * 8 7 6 34 34 H 1.09000 * 109.49548 * 56.84227 * 8 7 6 35 35 H 1.08998 * 109.48962 * 298.43258 * 9 8 7 36 36 H 1.08996 * 109.50960 * 178.38231 * 9 8 7 37 37 H 1.08998 * 109.46891 * 330.55721 * 11 10 9 38 38 H 1.09004 * 109.46519 * 90.55952 * 11 10 9 39 39 H 1.08996 * 109.47068 * 72.00016 * 13 12 11 40 40 H 1.08998 * 109.46658 * 192.00100 * 13 12 11 41 41 H 1.09001 * 109.47190 * 312.00042 * 13 12 11 42 42 H 1.08999 * 109.47580 * 55.43575 * 14 12 11 43 43 H 1.09000 * 109.47232 * 175.43971 * 14 12 11 44 44 H 1.09004 * 109.46982 * 295.43432 * 14 12 11 45 45 H 1.08997 * 109.47289 * 299.99973 * 15 12 11 46 46 H 1.09001 * 109.47004 * 60.00603 * 15 12 11 47 47 H 0.97006 * 119.99957 * 180.02562 * 19 18 16 48 48 H 1.08994 * 109.49190 * 299.35530 * 24 10 9 49 49 H 1.08997 * 109.49114 * 179.28522 * 24 10 9 50 50 H 1.09000 * 109.49005 * 303.15380 * 25 7 6 51 51 H 1.09003 * 109.48958 * 63.20289 * 25 7 6 52 52 H 1.08007 * 120.03940 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2029 -0.0005 5 6 4.2765 0.0099 -0.0005 6 6 3.5860 -1.1952 -0.0005 7 7 4.2868 -2.4034 0.0000 8 6 3.8905 -3.2416 1.1401 9 6 4.6200 -4.5848 1.0604 10 7 6.0710 -4.3520 1.0608 11 6 6.8081 -5.6228 1.0613 12 6 8.1383 -5.4404 1.7949 13 6 9.0247 -4.4711 1.0105 14 6 7.8766 -4.8753 3.1924 15 6 8.8436 -6.7928 1.9156 16 6 10.1536 -6.6134 2.6388 17 1 10.4531 -5.6329 2.9780 18 6 10.9699 -7.7009 2.8664 19 7 10.6057 -8.8947 2.4520 20 14 12.5939 -7.4784 3.7622 21 1 12.7701 -6.0479 4.1197 22 1 12.5945 -8.3017 4.9980 23 1 13.7087 -7.9086 2.8803 24 6 6.4673 -3.5138 -0.0795 25 6 5.7378 -2.1706 -0.0001 26 6 2.1967 -1.1962 0.0057 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6559 2.1325 -0.0004 31 1 4.1167 2.1403 -0.0010 32 1 5.3565 0.0141 -0.0005 33 1 4.1550 -2.7389 2.0704 34 1 2.8141 -3.4102 1.1109 35 1 4.3346 -5.0998 0.1431 36 1 4.3497 -5.1974 1.9204 37 1 6.2161 -6.3859 1.5665 38 1 6.9993 -5.9322 0.0337 39 1 8.6291 -3.4598 1.1045 40 1 10.0389 -4.5031 1.4085 41 1 9.0376 -4.7599 -0.0405 42 1 7.1803 -5.5250 3.7227 43 1 8.8151 -4.8213 3.7441 44 1 7.4480 -3.8768 3.1061 45 1 8.2121 -7.4834 2.4744 46 1 9.0300 -7.1954 0.9199 47 1 11.1799 -9.6599 2.6124 48 1 6.2029 -4.0165 -1.0097 49 1 7.5438 -3.3452 -0.0501 50 1 6.0079 -1.5585 -0.8606 51 1 6.0235 -1.6552 0.9169 52 1 1.6568 -2.1316 0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122000674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:45 Heat of formation + Delta-G solvation = 30.603217 kcal Electronic energy + Delta-G solvation = -26955.363822 eV Core-core repulsion = 23533.322914 eV Total energy + Delta-G solvation = -3422.040908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55522 -38.78429 -36.92754 -34.57772 -32.74341 -32.17233 -31.17380 -30.11818 -27.47397 -27.11244 -26.72578 -26.27419 -24.40195 -23.77577 -22.44526 -21.80498 -21.08061 -19.60755 -17.97403 -17.31742 -16.22601 -16.05248 -15.83724 -15.22739 -14.97615 -14.77978 -14.58353 -14.30598 -14.04472 -13.94710 -13.73409 -13.42209 -13.15811 -12.79313 -12.64652 -12.44701 -12.37085 -12.06280 -12.02098 -11.73444 -11.54396 -11.40303 -11.27654 -11.07748 -10.95759 -10.81582 -10.72692 -10.61511 -10.32835 -10.30159 -9.95279 -9.78989 -9.61635 -8.95985 -8.90032 -8.83965 -8.31034 -8.00234 -7.93821 -5.95522 -3.95221 1.19174 1.24139 3.32800 3.40769 3.42631 3.44250 3.74899 4.09995 4.50050 4.58779 4.66104 4.76518 4.94557 5.00550 5.07564 5.10942 5.18947 5.26839 5.32336 5.35191 5.38797 5.40342 5.45024 5.54613 5.65493 5.67653 5.69715 5.78940 5.86056 5.90967 5.95181 6.03706 6.06677 6.12965 6.26578 6.27552 6.33305 6.42189 6.55922 6.61498 6.72343 6.81347 6.86496 6.87425 7.14690 7.23064 7.25152 7.28821 7.37880 7.47403 7.72662 7.87609 8.05159 8.49830 9.10370 9.67366 11.16143 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.002378 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.493250 B =11770.255993 C =12142.878273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.153 4.153 4 C -0.090 4.090 5 C -0.177 4.177 6 C 0.122 3.878 7 N -0.492 5.492 8 C 0.064 3.936 9 C 0.054 3.946 10 N -0.531 5.531 11 C 0.066 3.934 12 C -0.051 4.051 13 C -0.133 4.133 14 C -0.113 4.113 15 C 0.032 3.968 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.053 3.947 19 N -0.897 5.897 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.040 3.960 25 C 0.055 3.945 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.014 0.986 46 H 0.012 0.988 47 H 0.258 0.742 48 H 0.037 0.963 49 H 0.104 0.896 50 H 0.081 0.919 51 H 0.055 0.945 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 17.855 -5.610 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.065 4.065 3 C -0.172 4.172 4 C -0.109 4.109 5 C -0.198 4.198 6 C 0.024 3.976 7 N -0.207 5.207 8 C -0.061 4.061 9 C -0.074 4.074 10 N -0.255 5.255 11 C -0.061 4.061 12 C -0.051 4.051 13 C -0.190 4.190 14 C -0.170 4.170 15 C -0.005 4.005 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.537 5.537 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.088 4.088 25 C -0.072 4.072 26 C -0.164 4.164 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.067 0.933 48 H 0.055 0.945 49 H 0.122 0.878 50 H 0.100 0.900 51 H 0.073 0.927 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.131 17.571 -5.597 25.861 hybrid contribution 0.934 -0.165 0.229 0.975 sum -17.197 17.406 -5.368 25.050 Atomic orbital electron populations 1.20791 0.91252 1.02698 1.02309 1.19752 0.95848 0.92814 0.98086 1.20910 0.94207 0.97301 1.04802 1.20978 0.94179 0.97572 0.98133 1.21333 1.00292 0.91926 1.06268 1.19001 0.92876 0.89045 0.96650 1.59236 1.06536 1.13481 1.41432 1.22292 0.99657 0.93457 0.90695 1.22214 0.88667 0.95441 1.01117 1.62184 1.03785 1.17635 1.41936 1.22349 0.95943 0.88690 0.99090 1.20557 0.91782 0.98361 0.94447 1.21989 1.01102 0.97258 0.98629 1.21568 1.00514 0.98830 0.96106 1.19133 0.94752 0.89862 0.96754 1.21270 1.03421 0.93836 1.35747 0.92192 1.25023 0.98097 0.95437 0.96141 1.69977 1.37560 0.98974 1.47237 0.86612 0.84188 0.78133 0.79527 1.19777 1.21188 1.21220 1.22643 1.01459 0.92563 0.92118 1.22382 0.85204 0.98071 1.01543 1.20636 0.92258 0.97866 1.05647 0.91162 0.91562 0.91581 0.86454 0.86183 0.85534 0.92932 0.90129 0.94354 0.89940 0.91700 0.94731 0.93976 0.91548 0.94491 0.94601 0.92661 0.93968 0.96788 0.96956 0.93251 0.94519 0.87829 0.90041 0.92691 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.06 -0.60 5.88 -104.65 -0.62 -1.21 16 3 C -0.15 -1.39 9.70 -39.54 -0.38 -1.77 16 4 C -0.09 -0.85 10.04 -39.61 -0.40 -1.24 16 5 C -0.18 -1.89 8.82 -39.38 -0.35 -2.23 16 6 C 0.12 1.40 5.64 -83.79 -0.47 0.93 16 7 N -0.49 -5.84 4.75 -170.95 -0.81 -6.65 16 8 C 0.06 0.73 5.38 -3.77 -0.02 0.71 16 9 C 0.05 0.68 5.49 -3.77 -0.02 0.66 16 10 N -0.53 -7.67 3.64 -234.46 -0.85 -8.53 16 11 C 0.07 1.13 4.24 -3.82 -0.02 1.11 16 12 C -0.05 -1.00 0.61 -154.51 -0.09 -1.09 16 13 C -0.13 -2.45 6.87 37.16 0.26 -2.19 16 14 C -0.11 -2.17 7.98 37.16 0.30 -1.87 16 15 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 16 C -0.50 -13.70 7.42 -34.44 -0.26 -13.96 16 17 H 0.06 1.59 5.77 -52.49 -0.30 1.29 16 18 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 19 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 C 0.04 0.53 5.09 -3.76 -0.02 0.52 16 25 C 0.05 0.64 4.30 -3.77 -0.02 0.63 16 26 C -0.14 -1.50 8.84 -39.39 -0.35 -1.85 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 1.24 5.81 -52.49 -0.31 0.94 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.80 6.81 -51.93 -0.35 0.44 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.00 7.98 -51.93 -0.41 0.58 16 37 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 38 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 39 H 0.04 0.68 6.10 -51.93 -0.32 0.36 16 40 H 0.07 1.36 6.32 -51.93 -0.33 1.03 16 41 H 0.04 0.65 7.82 -51.93 -0.41 0.25 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 1.15 6.48 -51.93 -0.34 0.82 16 44 H 0.04 0.74 7.59 -51.93 -0.39 0.35 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 49 H 0.10 1.42 4.23 -51.93 -0.22 1.20 16 50 H 0.08 0.87 7.17 -51.93 -0.37 0.49 16 51 H 0.05 0.67 7.58 -51.93 -0.39 0.27 16 52 H 0.12 1.17 7.17 -52.48 -0.38 0.79 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -29.63 388.15 -11.50 -41.13 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -9.10 Total: -1.15 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -2.30 Total: -21.15 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: -0.93 Total: -41.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.63 -11.50 -41.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122000674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.734 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds