Wall clock time and date at job start Tue Mar 31 2020 10:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38305 * 119.95664 * 2 1 4 4 C 1.38271 * 120.14666 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07353 * 359.97438 * 4 3 2 6 6 C 1.38889 * 119.92353 * 0.02562 * 5 4 3 7 7 N 1.39676 * 120.07164 * 180.02562 * 6 5 4 8 8 C 1.46952 * 111.00139 * 123.79542 * 7 6 5 9 9 C 1.53055 * 109.36722 * 176.80965 * 8 7 6 10 10 N 1.46955 * 109.36226 * 58.39960 * 9 8 7 11 11 C 1.46907 * 110.99900 * 176.81325 * 10 9 8 12 12 C 1.53001 * 109.46828 * 210.55469 * 11 10 9 13 13 C 1.52995 * 109.47237 * 294.50229 * 12 11 10 14 14 C 1.52997 * 109.46980 * 54.50774 * 12 11 10 15 15 C 1.53005 * 109.46559 * 174.50357 * 12 11 10 16 16 C 1.50705 * 109.46789 * 180.02562 * 15 12 11 17 17 H 1.07993 * 119.99761 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99703 * 180.02562 * 16 15 12 19 19 N 1.31510 * 120.00015 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99633 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47295 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47335 * 120.00274 * 20 18 16 23 23 H 1.48507 * 109.47049 * 239.99855 * 20 18 16 24 24 C 1.46960 * 110.88132 * 300.67974 * 10 9 8 25 25 C 1.46955 * 110.99993 * 359.97438 * 7 6 5 26 26 C 1.38073 * 119.96500 * 179.72514 * 2 1 3 27 27 H 1.08999 * 109.47202 * 90.00166 * 1 2 3 28 28 H 1.08999 * 109.46429 * 210.00108 * 1 2 3 29 29 H 1.08995 * 109.47228 * 329.99745 * 1 2 3 30 30 H 1.08000 * 119.93198 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.95982 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.03779 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.49319 * 296.77775 * 8 7 6 34 34 H 1.09000 * 109.49548 * 56.84227 * 8 7 6 35 35 H 1.08998 * 109.48962 * 298.43258 * 9 8 7 36 36 H 1.08996 * 109.50960 * 178.38231 * 9 8 7 37 37 H 1.08998 * 109.46891 * 330.55721 * 11 10 9 38 38 H 1.09004 * 109.46519 * 90.55952 * 11 10 9 39 39 H 1.08996 * 109.47068 * 72.00016 * 13 12 11 40 40 H 1.08998 * 109.46658 * 192.00100 * 13 12 11 41 41 H 1.09001 * 109.47190 * 312.00042 * 13 12 11 42 42 H 1.08999 * 109.47580 * 55.43575 * 14 12 11 43 43 H 1.09000 * 109.47232 * 175.43971 * 14 12 11 44 44 H 1.09004 * 109.46982 * 295.43432 * 14 12 11 45 45 H 1.08997 * 109.47289 * 299.99973 * 15 12 11 46 46 H 1.09001 * 109.47004 * 60.00603 * 15 12 11 47 47 H 0.97006 * 119.99957 * 180.02562 * 19 18 16 48 48 H 1.08994 * 109.49190 * 299.35530 * 24 10 9 49 49 H 1.08997 * 109.49114 * 179.28522 * 24 10 9 50 50 H 1.09000 * 109.49005 * 303.15380 * 25 7 6 51 51 H 1.09003 * 109.48958 * 63.20289 * 25 7 6 52 52 H 1.08007 * 120.03940 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2029 -0.0005 5 6 4.2765 0.0099 -0.0005 6 6 3.5860 -1.1952 -0.0005 7 7 4.2868 -2.4034 0.0000 8 6 3.8905 -3.2416 1.1401 9 6 4.6200 -4.5848 1.0604 10 7 6.0710 -4.3520 1.0608 11 6 6.8081 -5.6228 1.0613 12 6 8.1383 -5.4404 1.7949 13 6 9.0247 -4.4711 1.0105 14 6 7.8766 -4.8753 3.1924 15 6 8.8436 -6.7928 1.9156 16 6 10.1536 -6.6134 2.6388 17 1 10.4531 -5.6329 2.9780 18 6 10.9699 -7.7009 2.8664 19 7 10.6057 -8.8947 2.4520 20 14 12.5939 -7.4784 3.7622 21 1 12.7701 -6.0479 4.1197 22 1 12.5945 -8.3017 4.9980 23 1 13.7087 -7.9086 2.8803 24 6 6.4673 -3.5138 -0.0795 25 6 5.7378 -2.1706 -0.0001 26 6 2.1967 -1.1962 0.0057 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6559 2.1325 -0.0004 31 1 4.1167 2.1403 -0.0010 32 1 5.3565 0.0141 -0.0005 33 1 4.1550 -2.7389 2.0704 34 1 2.8141 -3.4102 1.1109 35 1 4.3346 -5.0998 0.1431 36 1 4.3497 -5.1974 1.9204 37 1 6.2161 -6.3859 1.5665 38 1 6.9993 -5.9322 0.0337 39 1 8.6291 -3.4598 1.1045 40 1 10.0389 -4.5031 1.4085 41 1 9.0376 -4.7599 -0.0405 42 1 7.1803 -5.5250 3.7227 43 1 8.8151 -4.8213 3.7441 44 1 7.4480 -3.8768 3.1061 45 1 8.2121 -7.4834 2.4744 46 1 9.0300 -7.1954 0.9199 47 1 11.1799 -9.6599 2.6124 48 1 6.2029 -4.0165 -1.0097 49 1 7.5438 -3.3452 -0.0501 50 1 6.0079 -1.5585 -0.8606 51 1 6.0235 -1.6552 0.9169 52 1 1.6568 -2.1316 0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122000674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:44 Heat of formation + Delta-G solvation = 15.496252 kcal Electronic energy + Delta-G solvation = -26956.018909 eV Core-core repulsion = 23533.322914 eV Total energy + Delta-G solvation = -3422.695996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.42875 -39.85926 -38.16562 -35.87779 -34.26270 -33.35706 -32.12707 -31.05739 -29.01603 -28.45153 -27.78910 -27.62143 -25.86857 -24.71208 -24.14831 -22.61426 -21.93762 -20.54934 -19.56966 -18.31829 -18.18835 -16.93656 -16.69361 -16.59389 -16.12434 -16.02246 -15.84431 -15.53572 -15.00580 -14.80786 -14.65738 -14.51899 -14.30319 -14.16714 -14.04798 -13.87215 -13.61316 -13.08315 -12.99251 -12.79880 -12.78965 -12.64691 -12.51854 -12.41575 -12.29438 -12.18792 -12.10687 -12.03480 -11.91457 -11.78390 -11.50311 -11.30310 -10.84597 -10.69058 -10.54932 -10.49811 -9.60496 -9.20996 -8.76207 -8.13065 -6.19402 0.46681 0.51003 1.40299 1.41521 1.53559 2.44124 2.63112 2.93554 2.97136 3.20863 3.79303 3.88316 3.98850 4.03997 4.12507 4.19973 4.24821 4.28188 4.34341 4.40530 4.44679 4.49581 4.52365 4.57279 4.63116 4.74839 4.77608 4.82866 4.86070 4.87276 4.88593 4.94631 4.97326 5.05021 5.09228 5.11669 5.22871 5.25861 5.28192 5.37200 5.54058 5.56101 5.56955 5.63597 5.68385 5.73127 5.87228 5.90240 5.95056 6.01068 6.10504 6.20698 6.37922 6.40417 6.95769 7.47480 8.99347 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.002378 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.493250 B =11770.255993 C =12142.878273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.070 4.070 3 C -0.157 4.157 4 C -0.096 4.096 5 C -0.191 4.191 6 C 0.103 3.897 7 N -0.499 5.499 8 C 0.072 3.928 9 C 0.055 3.945 10 N -0.532 5.532 11 C 0.078 3.922 12 C -0.047 4.047 13 C -0.124 4.124 14 C -0.102 4.102 15 C 0.039 3.961 16 C -0.510 4.510 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.042 3.958 25 C 0.063 3.937 26 C -0.155 4.155 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.036 0.964 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.039 0.961 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.063 0.937 45 H -0.016 1.016 46 H -0.017 1.017 47 H 0.259 0.741 48 H 0.031 0.969 49 H 0.101 0.899 50 H 0.093 0.907 51 H 0.052 0.948 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.180 20.421 -5.472 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.071 4.071 3 C -0.176 4.176 4 C -0.114 4.114 5 C -0.211 4.211 6 C 0.006 3.994 7 N -0.214 5.214 8 C -0.054 4.054 9 C -0.073 4.073 10 N -0.256 5.256 11 C -0.050 4.050 12 C -0.047 4.047 13 C -0.181 4.181 14 C -0.159 4.159 15 C 0.002 3.998 16 C -0.548 4.548 17 H 0.084 0.916 18 C -0.203 4.203 19 N -0.579 5.579 20 Si 0.781 3.219 21 H -0.185 1.185 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.086 4.086 25 C -0.064 4.064 26 C -0.176 4.176 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.003 0.997 46 H 0.002 0.998 47 H 0.068 0.932 48 H 0.049 0.951 49 H 0.118 0.882 50 H 0.111 0.889 51 H 0.071 0.929 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.094 20.165 -5.460 28.303 hybrid contribution 1.141 -0.922 0.153 1.475 sum -17.953 19.243 -5.308 26.848 Atomic orbital electron populations 1.20834 0.89464 1.03579 1.03032 1.20096 0.97283 0.92532 0.97201 1.21248 0.94321 0.98170 1.03876 1.21273 0.94647 0.97998 0.97493 1.21487 1.00678 0.92218 1.06763 1.19140 0.93380 0.89002 0.97908 1.59268 1.06446 1.14099 1.41595 1.22227 1.00318 0.92438 0.90388 1.22251 0.87369 0.96468 1.01197 1.62116 1.04784 1.16067 1.42647 1.22054 0.94837 0.90012 0.98080 1.20412 0.93002 0.95628 0.95693 1.21898 0.99527 0.98383 0.98303 1.21450 0.99488 0.99795 0.95180 1.19011 0.94335 0.92221 0.94249 1.21633 1.04058 0.93973 1.35114 0.91613 1.25920 1.01945 0.95199 0.97199 1.70116 1.39109 0.99861 1.48846 0.85530 0.79607 0.78597 0.78132 1.18478 1.20902 1.20889 1.22626 1.01493 0.93128 0.91320 1.22298 0.85283 0.96908 1.01949 1.20798 0.92080 0.98647 1.06034 0.90415 0.91119 0.90325 0.84365 0.84258 0.85181 0.93668 0.88580 0.94617 0.89500 0.92293 0.95440 0.91221 0.93737 0.94225 0.95082 0.94508 0.91824 0.99727 0.99846 0.93227 0.95117 0.88157 0.88890 0.92930 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.51 16 2 C -0.07 -1.16 5.88 -19.88 -0.12 -1.28 16 3 C -0.16 -2.46 9.70 22.29 0.22 -2.24 16 4 C -0.10 -1.59 10.04 22.25 0.22 -1.37 16 5 C -0.19 -3.74 8.82 22.40 0.20 -3.55 16 6 C 0.10 2.21 5.64 38.21 0.22 2.43 16 7 N -0.50 -11.15 4.75 -694.78 -3.30 -14.46 16 8 C 0.07 1.53 5.38 86.31 0.46 2.00 16 9 C 0.06 1.34 5.49 86.31 0.47 1.81 16 10 N -0.53 -14.86 3.64 -895.69 -3.26 -18.12 16 11 C 0.08 2.67 4.24 86.30 0.37 3.03 16 12 C -0.05 -1.85 0.61 -52.18 -0.03 -1.88 16 13 C -0.12 -4.51 6.87 71.98 0.49 -4.02 16 14 C -0.10 -3.86 7.98 71.98 0.57 -3.29 16 15 C 0.04 2.04 4.04 29.85 0.12 2.16 16 16 C -0.51 -28.19 7.42 25.60 0.19 -28.00 16 17 H 0.07 3.50 5.77 -2.91 -0.02 3.49 16 18 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 19 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 20 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 C 0.04 1.07 5.09 86.31 0.44 1.51 16 25 C 0.06 1.37 4.30 86.31 0.37 1.75 16 26 C -0.16 -3.00 8.84 22.40 0.20 -2.80 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.08 0.65 8.08 -2.39 -0.02 0.64 16 30 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.13 2.35 5.81 -2.91 -0.02 2.33 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.75 6.81 -2.39 -0.02 1.73 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 2.02 7.98 -2.39 -0.02 2.00 16 37 H 0.06 2.07 7.67 -2.39 -0.02 2.05 16 38 H 0.03 0.97 7.76 -2.38 -0.02 0.95 16 39 H 0.07 2.14 6.10 -2.39 -0.01 2.13 16 40 H 0.04 1.80 6.32 -2.39 -0.02 1.78 16 41 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.04 1.51 6.48 -2.39 -0.02 1.49 16 44 H 0.06 2.13 7.59 -2.39 -0.02 2.11 16 45 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 47 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 48 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 49 H 0.10 2.60 4.23 -2.39 -0.01 2.58 16 50 H 0.09 1.82 7.17 -2.39 -0.02 1.81 16 51 H 0.05 1.18 7.58 -2.39 -0.02 1.17 16 52 H 0.13 2.22 7.17 -2.91 -0.02 2.20 16 Total: -1.00 -64.30 388.15 2.19 -62.11 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.87 Total: 15.11 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 5.57 Total: -34.13 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -6.28 Total: -89.74 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.30 2.19 -62.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122000674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.603 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds