Wall clock time and date at job start Tue Mar 31 2020 10:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47353 * 2 1 4 4 C 1.53124 * 109.52641 * 175.00127 * 3 2 1 5 5 C 1.53032 * 109.28012 * 177.55871 * 4 3 2 6 6 N 1.46846 * 109.52260 * 300.82015 * 5 4 3 7 7 C 1.46902 * 111.00204 * 185.84105 * 6 5 4 8 8 C 1.50697 * 109.47604 * 169.99877 * 7 6 5 9 9 C 1.38284 * 119.92411 * 269.73169 * 8 7 6 10 10 C 1.38107 * 120.07404 * 179.72519 * 9 8 7 11 11 C 1.38911 * 119.92118 * 0.54216 * 10 9 8 12 12 N 1.39680 * 120.07599 * 179.75092 * 11 10 9 13 13 C 1.46499 * 120.00031 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99615 * 359.97438 * 12 11 10 15 15 C 1.50697 * 109.46922 * 90.00196 * 14 12 11 16 16 H 1.08003 * 120.00199 * 359.97438 * 15 14 12 17 17 C 1.37887 * 119.99926 * 179.97438 * 15 14 12 18 18 N 1.31509 * 119.99900 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99930 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47071 * 90.00128 * 19 17 15 21 21 H 1.48497 * 109.47347 * 210.00328 * 19 17 15 22 22 H 1.48508 * 109.47117 * 330.00236 * 19 17 15 23 23 C 1.38914 * 119.85237 * 359.72809 * 11 10 9 24 24 C 1.38101 * 119.92494 * 0.02562 * 23 11 10 25 25 C 1.46846 * 111.19997 * 61.74591 * 6 5 4 26 26 C 1.53040 * 109.51964 * 298.25655 * 25 6 5 27 27 H 1.09000 * 109.47288 * 59.99874 * 1 2 3 28 28 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47044 * 300.00333 * 1 2 3 30 30 H 1.09007 * 109.47044 * 239.99667 * 2 1 3 31 31 H 1.09000 * 109.47288 * 120.00126 * 2 1 3 32 32 H 1.09003 * 109.52576 * 54.87028 * 3 2 1 33 33 H 1.08999 * 109.49853 * 57.61495 * 4 3 2 34 34 H 1.08994 * 109.53481 * 297.52286 * 4 3 2 35 35 H 1.09001 * 109.46314 * 180.80749 * 5 4 3 36 36 H 1.08999 * 109.45415 * 60.83229 * 5 4 3 37 37 H 1.08997 * 109.47248 * 290.00292 * 7 6 5 38 38 H 1.09002 * 109.47302 * 49.99792 * 7 6 5 39 39 H 1.08000 * 119.96664 * 359.97020 * 9 8 7 40 40 H 1.07999 * 120.04222 * 180.27004 * 10 9 8 41 41 H 1.09005 * 109.47024 * 90.00320 * 13 12 11 42 42 H 1.09004 * 109.46779 * 209.99789 * 13 12 11 43 43 H 1.08997 * 109.47387 * 329.99868 * 13 12 11 44 44 H 1.09004 * 109.46996 * 210.00126 * 14 12 11 45 45 H 1.08996 * 109.47278 * 329.99872 * 14 12 11 46 46 H 0.96996 * 120.00030 * 179.97438 * 18 17 15 47 47 H 1.08008 * 120.03853 * 179.97438 * 23 11 10 48 48 H 1.07998 * 119.96087 * 180.02562 * 24 23 11 49 49 H 1.08996 * 109.46231 * 58.27402 * 25 6 5 50 50 H 1.09004 * 109.46418 * 178.24241 * 25 6 5 51 51 H 1.09004 * 109.50602 * 299.23671 * 26 25 6 52 52 H 1.08998 * 109.50366 * 179.12192 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5661 1.4457 0.1257 5 6 4.0751 2.8875 0.0639 6 7 3.6697 3.4969 -1.2091 7 6 4.2579 4.8341 -1.3637 8 6 4.0272 5.3250 -2.7696 9 6 4.9604 5.0592 -3.7549 10 6 4.7495 5.5028 -5.0457 11 6 3.6037 6.2264 -5.3512 12 7 3.3896 6.6810 -6.6545 13 6 2.1805 7.4435 -6.9749 14 6 4.3743 6.3953 -7.7008 15 6 4.0320 5.0889 -8.3695 16 1 3.1677 4.5274 -8.0470 17 6 4.8223 4.6105 -9.3931 18 7 5.8751 5.2940 -9.7855 19 14 4.3984 2.9907 -10.2215 20 1 3.4943 3.2448 -11.3717 21 1 5.6433 2.3410 -10.7044 22 1 3.7206 2.0987 -9.2466 23 6 2.6711 6.4964 -4.3577 24 6 2.8858 6.0455 -3.0702 25 6 2.2072 3.5480 -1.3315 26 6 1.6424 2.1258 -1.3113 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6041 1.9830 0.8402 33 1 3.9998 0.8711 -0.6927 34 1 3.8543 0.9984 1.0770 35 1 5.1625 2.8923 0.1388 36 1 3.6516 3.4578 0.8907 37 1 3.7902 5.5205 -0.6578 38 1 5.3289 4.7849 -1.1671 39 1 5.8533 4.5007 -3.5157 40 1 5.4765 5.2911 -5.8157 41 1 2.3724 8.5067 -6.8303 42 1 1.9014 7.2626 -8.0130 43 1 1.3681 7.1285 -6.3200 44 1 4.3616 7.1962 -8.4401 45 1 5.3672 6.3268 -7.2565 46 1 6.4313 4.9572 -10.5053 47 1 1.7794 7.0591 -4.5918 48 1 2.1609 6.2548 -2.2975 49 1 1.7927 4.1153 -0.4982 50 1 1.9380 4.0324 -2.2701 51 1 2.0459 1.5619 -2.1524 52 1 0.5557 2.1647 -1.3864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125342997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:04 Heat of formation + Delta-G solvation = 14.846265 kcal Electronic energy + Delta-G solvation = -26649.936411 eV Core-core repulsion = 23227.212229 eV Total energy + Delta-G solvation = -3422.724181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.61431 -38.64737 -36.21224 -34.89611 -32.72166 -31.52343 -30.83436 -30.34812 -29.29402 -27.78795 -26.24451 -24.72937 -23.78002 -23.03655 -22.03087 -21.46475 -20.96373 -19.72003 -19.52828 -16.62859 -16.43222 -16.03254 -15.39287 -15.10620 -14.92591 -14.57807 -14.36277 -14.15861 -13.99176 -13.80702 -13.69205 -13.24778 -13.13686 -12.90243 -12.84605 -12.43063 -12.16665 -12.01717 -11.93314 -11.70892 -11.48258 -11.36735 -11.25162 -11.22621 -11.14119 -10.94285 -10.78024 -10.66878 -10.61531 -10.26556 -10.23386 -10.12643 -9.86651 -9.72416 -8.80882 -8.49218 -8.24208 -8.15748 -6.43989 -5.99846 -4.15799 2.14098 2.24862 3.27533 3.34430 3.39544 4.00533 4.17993 4.43038 4.56026 4.63793 4.65744 4.73299 5.07843 5.10807 5.19855 5.21258 5.23090 5.32481 5.40407 5.44891 5.47225 5.54129 5.55793 5.60201 5.68808 5.73650 5.79293 5.80271 5.85118 5.89984 5.94066 5.97527 6.04092 6.05407 6.10626 6.16306 6.20633 6.29537 6.38420 6.43134 6.47044 6.66797 6.95720 7.04152 7.14798 7.22050 7.27830 7.30924 7.41183 7.63870 7.82732 8.17252 8.29002 8.51313 8.93361 9.51044 10.97128 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.003087 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.477077 B = 9068.456866 C =10043.046580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.111 4.111 5 C 0.056 3.944 6 N -0.531 5.531 7 C 0.112 3.888 8 C -0.166 4.166 9 C -0.051 4.051 10 C -0.188 4.188 11 C 0.241 3.759 12 N -0.616 5.616 13 C 0.099 3.901 14 C 0.249 3.751 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.222 4.222 24 C -0.069 4.069 25 C 0.054 3.946 26 C -0.112 4.112 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.024 0.976 50 H 0.085 0.915 51 H 0.072 0.928 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 -3.890 20.194 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.107 4.107 4 C -0.149 4.149 5 C -0.072 4.072 6 N -0.256 5.256 7 C -0.015 4.015 8 C -0.169 4.169 9 C -0.071 4.071 10 C -0.210 4.210 11 C 0.134 3.866 12 N -0.322 5.322 13 C -0.045 4.045 14 C 0.129 3.871 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.245 4.245 24 C -0.088 4.088 25 C -0.074 4.074 26 C -0.150 4.150 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.130 0.870 48 H 0.122 0.878 49 H 0.042 0.958 50 H 0.103 0.897 51 H 0.090 0.910 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.828 -4.102 19.447 21.015 hybrid contribution -0.546 -0.400 -0.015 0.677 sum -7.374 -4.502 19.432 21.266 Atomic orbital electron populations 1.21817 0.96061 1.01357 1.01878 1.21554 0.95771 0.96420 1.01858 1.21235 0.95575 0.95825 0.98067 1.21633 0.95209 0.96333 1.01724 1.22059 1.00127 0.94997 0.90011 1.61947 1.09304 1.21544 1.32794 1.20802 0.99146 0.87843 0.93726 1.19123 0.97439 1.05424 0.94871 1.20621 0.97828 0.96657 0.91969 1.20888 0.99000 1.03969 0.97161 1.17945 0.92861 0.90989 0.84787 1.47093 1.22583 1.55999 1.06527 1.21463 0.87568 0.94266 1.01239 1.19277 0.87183 0.95995 0.84607 1.21586 1.11891 1.06105 1.17363 0.92261 1.24960 0.94845 0.97524 0.96730 1.69927 1.15864 1.38717 1.28951 0.86529 0.77880 0.83647 0.79639 1.20651 1.21069 1.19750 1.20512 1.00951 1.09880 0.93174 1.20495 0.95994 0.97008 0.95306 1.22140 0.87265 0.96678 1.01276 1.21682 0.99817 0.95806 0.97657 0.92342 0.93032 0.93034 0.91835 0.92333 0.91873 0.90979 0.91978 0.90969 0.95521 0.95173 0.90805 0.87098 0.85121 0.94677 0.91494 0.92739 0.95257 0.94617 0.92661 0.87019 0.87845 0.95756 0.89668 0.90977 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.84 16 2 C -0.12 -0.99 5.40 -26.74 -0.14 -1.13 16 3 C -0.09 -0.82 2.25 -90.50 -0.20 -1.03 16 4 C -0.11 -1.05 5.38 -26.65 -0.14 -1.20 16 5 C 0.06 0.59 5.46 -3.84 -0.02 0.56 16 6 N -0.53 -6.74 4.65 -236.12 -1.10 -7.84 16 7 C 0.11 1.45 5.12 -4.98 -0.03 1.42 16 8 C -0.17 -2.60 4.89 -104.59 -0.51 -3.11 16 9 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 10 C -0.19 -3.85 9.21 -39.38 -0.36 -4.22 16 11 C 0.24 4.93 6.55 -83.78 -0.55 4.38 16 12 N -0.62 -13.32 2.99 -181.00 -0.54 -13.86 16 13 C 0.10 1.75 10.19 59.85 0.61 2.36 16 14 C 0.25 6.30 4.91 -5.20 -0.03 6.27 16 15 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 16 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 24 C -0.07 -1.07 7.86 -39.61 -0.31 -1.39 16 25 C 0.05 0.66 5.15 -3.83 -0.02 0.64 16 26 C -0.11 -1.22 5.08 -26.65 -0.14 -1.35 16 27 H 0.06 0.47 6.64 -51.93 -0.34 0.13 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 38 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.13 2.96 6.14 -52.49 -0.32 2.64 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 43 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16 48 H 0.10 1.38 7.95 -52.49 -0.42 0.97 16 49 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 1.19 5.75 -51.93 -0.30 0.89 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.06 0.64 6.71 -51.93 -0.35 0.29 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -28.68 398.27 -11.97 -40.65 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -9.40 Total: 1.12 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.65 Total: -17.46 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.90 Total: -46.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.68 -11.97 -40.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125342997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.498 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds