Wall clock time and date at job start Tue Mar 31 2020 10:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47353 * 2 1 4 4 C 1.53124 * 109.52641 * 175.00127 * 3 2 1 5 5 C 1.53032 * 109.28012 * 177.55871 * 4 3 2 6 6 N 1.46846 * 109.52260 * 300.82015 * 5 4 3 7 7 C 1.46902 * 111.00204 * 185.84105 * 6 5 4 8 8 C 1.50697 * 109.47604 * 169.99877 * 7 6 5 9 9 C 1.38284 * 119.92411 * 269.73169 * 8 7 6 10 10 C 1.38107 * 120.07404 * 179.72519 * 9 8 7 11 11 C 1.38911 * 119.92118 * 0.54216 * 10 9 8 12 12 N 1.39680 * 120.07599 * 179.75092 * 11 10 9 13 13 C 1.46499 * 120.00031 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99615 * 359.97438 * 12 11 10 15 15 C 1.50697 * 109.46922 * 90.00196 * 14 12 11 16 16 H 1.08003 * 120.00199 * 359.97438 * 15 14 12 17 17 C 1.37887 * 119.99926 * 179.97438 * 15 14 12 18 18 N 1.31509 * 119.99900 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99930 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47071 * 90.00128 * 19 17 15 21 21 H 1.48497 * 109.47347 * 210.00328 * 19 17 15 22 22 H 1.48508 * 109.47117 * 330.00236 * 19 17 15 23 23 C 1.38914 * 119.85237 * 359.72809 * 11 10 9 24 24 C 1.38101 * 119.92494 * 0.02562 * 23 11 10 25 25 C 1.46846 * 111.19997 * 61.74591 * 6 5 4 26 26 C 1.53040 * 109.51964 * 298.25655 * 25 6 5 27 27 H 1.09000 * 109.47288 * 59.99874 * 1 2 3 28 28 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47044 * 300.00333 * 1 2 3 30 30 H 1.09007 * 109.47044 * 239.99667 * 2 1 3 31 31 H 1.09000 * 109.47288 * 120.00126 * 2 1 3 32 32 H 1.09003 * 109.52576 * 54.87028 * 3 2 1 33 33 H 1.08999 * 109.49853 * 57.61495 * 4 3 2 34 34 H 1.08994 * 109.53481 * 297.52286 * 4 3 2 35 35 H 1.09001 * 109.46314 * 180.80749 * 5 4 3 36 36 H 1.08999 * 109.45415 * 60.83229 * 5 4 3 37 37 H 1.08997 * 109.47248 * 290.00292 * 7 6 5 38 38 H 1.09002 * 109.47302 * 49.99792 * 7 6 5 39 39 H 1.08000 * 119.96664 * 359.97020 * 9 8 7 40 40 H 1.07999 * 120.04222 * 180.27004 * 10 9 8 41 41 H 1.09005 * 109.47024 * 90.00320 * 13 12 11 42 42 H 1.09004 * 109.46779 * 209.99789 * 13 12 11 43 43 H 1.08997 * 109.47387 * 329.99868 * 13 12 11 44 44 H 1.09004 * 109.46996 * 210.00126 * 14 12 11 45 45 H 1.08996 * 109.47278 * 329.99872 * 14 12 11 46 46 H 0.96996 * 120.00030 * 179.97438 * 18 17 15 47 47 H 1.08008 * 120.03853 * 179.97438 * 23 11 10 48 48 H 1.07998 * 119.96087 * 180.02562 * 24 23 11 49 49 H 1.08996 * 109.46231 * 58.27402 * 25 6 5 50 50 H 1.09004 * 109.46418 * 178.24241 * 25 6 5 51 51 H 1.09004 * 109.50602 * 299.23671 * 26 25 6 52 52 H 1.08998 * 109.50366 * 179.12192 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5661 1.4457 0.1257 5 6 4.0751 2.8875 0.0639 6 7 3.6697 3.4969 -1.2091 7 6 4.2579 4.8341 -1.3637 8 6 4.0272 5.3250 -2.7696 9 6 4.9604 5.0592 -3.7549 10 6 4.7495 5.5028 -5.0457 11 6 3.6037 6.2264 -5.3512 12 7 3.3896 6.6810 -6.6545 13 6 2.1805 7.4435 -6.9749 14 6 4.3743 6.3953 -7.7008 15 6 4.0320 5.0889 -8.3695 16 1 3.1677 4.5274 -8.0470 17 6 4.8223 4.6105 -9.3931 18 7 5.8751 5.2940 -9.7855 19 14 4.3984 2.9907 -10.2215 20 1 3.4943 3.2448 -11.3717 21 1 5.6433 2.3410 -10.7044 22 1 3.7206 2.0987 -9.2466 23 6 2.6711 6.4964 -4.3577 24 6 2.8858 6.0455 -3.0702 25 6 2.2072 3.5480 -1.3315 26 6 1.6424 2.1258 -1.3113 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6041 1.9830 0.8402 33 1 3.9998 0.8711 -0.6927 34 1 3.8543 0.9984 1.0770 35 1 5.1625 2.8923 0.1388 36 1 3.6516 3.4578 0.8907 37 1 3.7902 5.5205 -0.6578 38 1 5.3289 4.7849 -1.1671 39 1 5.8533 4.5007 -3.5157 40 1 5.4765 5.2911 -5.8157 41 1 2.3724 8.5067 -6.8303 42 1 1.9014 7.2626 -8.0130 43 1 1.3681 7.1285 -6.3200 44 1 4.3616 7.1962 -8.4401 45 1 5.3672 6.3268 -7.2565 46 1 6.4313 4.9572 -10.5053 47 1 1.7794 7.0591 -4.5918 48 1 2.1609 6.2548 -2.2975 49 1 1.7927 4.1153 -0.4982 50 1 1.9380 4.0324 -2.2701 51 1 2.0459 1.5619 -2.1524 52 1 0.5557 2.1647 -1.3864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125342997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:03 Heat of formation + Delta-G solvation = 1.349284 kcal Electronic energy + Delta-G solvation = -26650.521684 eV Core-core repulsion = 23227.212229 eV Total energy + Delta-G solvation = -3423.309454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74571 -39.83294 -37.54079 -36.00488 -34.73595 -32.51425 -31.98042 -31.53818 -30.47491 -29.59624 -27.45470 -26.19451 -24.90071 -24.17434 -23.37488 -22.82784 -21.80892 -20.98283 -20.52770 -18.63829 -18.08589 -16.94559 -16.91205 -16.41037 -16.07727 -15.76540 -15.50298 -15.34233 -15.31028 -14.87884 -14.73893 -14.51628 -14.31096 -14.18512 -14.01569 -13.94261 -13.36896 -13.17504 -13.09516 -12.94656 -12.88388 -12.72449 -12.64963 -12.54518 -12.35578 -12.21389 -12.06431 -11.95239 -11.80975 -11.73491 -11.43155 -11.37360 -11.01722 -10.95987 -10.64398 -10.38569 -9.64268 -9.11044 -8.36176 -7.79093 -6.37674 0.71676 0.84908 1.35897 1.37498 1.48568 2.34109 2.63956 2.93385 3.05829 3.38238 3.84186 3.88778 3.94466 4.06078 4.09090 4.22878 4.37327 4.39266 4.43024 4.44471 4.51873 4.54958 4.64626 4.67114 4.72075 4.72486 4.75546 4.79242 4.85542 4.86826 4.91986 5.00834 5.01847 5.10465 5.13003 5.14305 5.18020 5.21259 5.23653 5.29299 5.33172 5.36930 5.49009 5.59531 5.62103 5.67423 5.70303 5.94480 6.07198 6.19425 6.27769 6.35034 6.50547 6.82881 6.94562 7.34189 8.83013 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.003087 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.477077 B = 9068.456866 C =10043.046580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.083 4.083 4 C -0.109 4.109 5 C 0.056 3.944 6 N -0.549 5.549 7 C 0.115 3.885 8 C -0.153 4.153 9 C -0.056 4.056 10 C -0.216 4.216 11 C 0.213 3.787 12 N -0.633 5.633 13 C 0.098 3.902 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.274 1.274 23 C -0.217 4.217 24 C -0.061 4.061 25 C 0.055 3.945 26 C -0.110 4.110 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.009 0.991 45 H 0.010 0.990 46 H 0.267 0.733 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.037 0.963 50 H 0.065 0.935 51 H 0.049 0.951 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 -4.663 22.964 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.102 4.102 4 C -0.147 4.147 5 C -0.071 4.071 6 N -0.274 5.274 7 C -0.012 4.012 8 C -0.155 4.155 9 C -0.075 4.075 10 C -0.239 4.239 11 C 0.108 3.892 12 N -0.341 5.341 13 C -0.044 4.044 14 C 0.145 3.855 15 C -0.580 4.580 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.198 1.198 23 C -0.239 4.239 24 C -0.080 4.080 25 C -0.072 4.072 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.076 0.924 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.056 0.944 50 H 0.084 0.916 51 H 0.068 0.932 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.538 -4.871 22.252 24.326 hybrid contribution -0.014 -0.169 -0.737 0.756 sum -8.552 -5.041 21.515 23.695 Atomic orbital electron populations 1.21810 0.95574 1.01772 1.01885 1.21532 0.96186 0.95815 1.01876 1.21197 0.95483 0.96250 0.97235 1.21630 0.95224 0.95735 1.02107 1.22114 1.00566 0.95303 0.89119 1.61890 1.09666 1.21302 1.34583 1.20782 1.00041 0.88516 0.91855 1.19475 0.96412 1.03763 0.95881 1.20765 0.98891 0.96586 0.91299 1.20774 0.99198 1.06222 0.97733 1.18201 0.93846 0.92192 0.84956 1.46961 1.23169 1.57605 1.06337 1.21596 0.86799 0.94874 1.01180 1.18758 0.87311 0.94476 0.84916 1.21776 1.11533 1.06959 1.17738 0.93391 1.25775 0.94650 1.00893 0.97321 1.70031 1.16730 1.40363 1.29518 0.85514 0.77923 0.79355 0.78660 1.19445 1.20315 1.19835 1.20764 1.00693 1.09397 0.93073 1.20864 0.96279 0.95555 0.95268 1.22107 0.87148 0.97305 1.00677 1.21651 1.00170 0.95081 0.97832 0.93005 0.92494 0.92306 0.92894 0.91244 0.91014 0.92560 0.90078 0.90486 0.94400 0.93419 0.89986 0.86173 0.88821 0.92914 0.92556 0.90378 0.97263 0.97173 0.92364 0.84969 0.84496 0.94445 0.91635 0.93216 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 71.98 0.70 -1.36 16 2 C -0.12 -1.71 5.40 30.59 0.17 -1.54 16 3 C -0.08 -1.34 2.25 -10.71 -0.02 -1.37 16 4 C -0.11 -1.81 5.38 30.65 0.16 -1.64 16 5 C 0.06 1.01 5.46 86.32 0.47 1.49 16 6 N -0.55 -12.65 4.65 -900.94 -4.19 -16.84 16 7 C 0.11 2.66 5.12 85.56 0.44 3.10 16 8 C -0.15 -4.53 4.89 -19.84 -0.10 -4.63 16 9 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 10 C -0.22 -9.35 9.21 22.40 0.21 -9.15 16 11 C 0.21 8.88 6.55 38.21 0.25 9.13 16 12 N -0.63 -28.31 2.99 -726.56 -2.17 -30.48 16 13 C 0.10 3.48 10.19 127.77 1.30 4.78 16 14 C 0.27 14.33 4.91 85.63 0.42 14.75 16 15 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 16 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 17 C 0.01 0.73 5.46 84.66 0.46 1.19 16 18 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 19 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 23 C -0.22 -7.26 9.21 22.40 0.21 -7.06 16 24 C -0.06 -1.74 7.86 22.25 0.17 -1.57 16 25 C 0.06 1.21 5.15 86.33 0.44 1.66 16 26 C -0.11 -2.20 5.08 30.65 0.16 -2.04 16 27 H 0.05 0.76 6.64 -2.39 -0.02 0.74 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.31 8.02 -2.39 -0.02 1.29 16 36 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 0.97 8.07 -2.39 -0.02 0.95 16 38 H 0.08 1.78 7.93 -2.39 -0.02 1.76 16 39 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 40 H 0.09 4.67 6.14 -2.91 -0.02 4.65 16 41 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 43 H 0.08 2.34 6.20 -2.39 -0.01 2.33 16 44 H 0.01 0.53 8.07 -2.38 -0.02 0.51 16 45 H 0.01 0.60 6.20 -2.39 -0.01 0.58 16 46 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 47 H 0.13 3.83 6.14 -2.91 -0.02 3.81 16 48 H 0.14 3.07 7.95 -2.91 -0.02 3.04 16 49 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 1.68 5.75 -2.38 -0.01 1.67 16 51 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.07 1.32 6.71 -2.39 -0.02 1.30 16 Total: -1.00 -64.12 398.27 2.70 -61.42 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.86 Total: 20.73 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 5.89 Total: -26.85 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -6.08 Total: -102.21 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.12 2.70 -61.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125342997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.768 kcal (2) G-P(sol) polarization free energy of solvation -64.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds