Wall clock time and date at job start Tue Mar 31 2020 11:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09003 * 110.28760 * 324.32598 * 15 14 13 17 17 C 1.54264 * 110.32302 * 86.45396 * 15 14 13 18 18 C 1.54379 * 105.05895 * 118.89546 * 17 15 14 19 19 N 1.48560 * 104.59522 * 23.85388 * 18 17 15 20 20 C 1.46898 * 111.00344 * 200.96199 * 19 18 17 21 21 C 1.50705 * 109.46819 * 290.12542 * 20 19 18 22 22 C 1.38236 * 120.00061 * 269.72550 * 21 20 19 23 23 C 1.38239 * 120.00090 * 179.76629 * 22 21 20 24 24 C 1.38236 * 119.99883 * 0.48518 * 23 22 21 25 25 C 1.38239 * 120.00035 * 359.79062 * 24 23 22 26 26 C 1.38239 * 119.99878 * 89.99655 * 21 20 19 27 27 C 1.48568 * 104.22317 * 320.51634 * 19 18 17 28 28 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 30 30 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 33 33 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 34 34 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 36 36 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 38 38 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 39 39 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 40 40 H 1.08995 * 110.32183 * 237.78931 * 17 15 14 41 41 H 1.09002 * 110.31999 * 0.02562 * 17 15 14 42 42 H 1.08994 * 110.41529 * 142.63087 * 18 17 15 43 43 H 1.08999 * 110.41424 * 265.07463 * 18 17 15 44 44 H 1.08998 * 109.47232 * 50.11763 * 20 19 18 45 45 H 1.08994 * 109.47631 * 170.12327 * 20 19 18 46 46 H 1.07994 * 119.99841 * 359.97438 * 22 21 20 47 47 H 1.07997 * 119.99922 * 180.25146 * 23 22 21 48 48 H 1.07993 * 120.00148 * 179.76627 * 24 23 22 49 49 H 1.08001 * 120.00170 * 179.97438 * 25 24 23 50 50 H 1.07995 * 120.00048 * 0.02562 * 26 21 20 51 51 H 1.09003 * 110.40957 * 280.70768 * 27 19 18 52 52 H 1.08992 * 110.41156 * 158.26366 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 1 2.0552 -1.7740 3.5237 17 6 3.4153 -0.1640 4.0659 18 6 3.2235 0.4651 5.4626 19 7 2.0274 -0.2175 6.0196 20 6 1.4193 0.5787 7.0939 21 6 2.3260 0.5737 8.2976 22 6 2.1853 -0.4038 9.2649 23 6 3.0201 -0.4113 10.3667 24 6 3.9891 0.5647 10.5062 25 6 4.1261 1.5456 9.5418 26 6 3.2947 1.5499 8.4373 27 6 1.1052 -0.3412 4.8613 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7218 -1.2489 35 1 1.6767 -1.7491 -1.2491 36 1 2.8618 -1.8826 -4.7335 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7489 1.2494 39 1 1.8198 0.9437 2.4401 40 1 4.1323 -0.9835 4.1151 41 1 3.7492 0.5906 3.3537 42 1 4.0954 0.2750 6.0882 43 1 3.0435 1.5366 5.3754 44 1 1.2769 1.6034 6.7506 45 1 0.4548 0.1486 7.3637 46 1 1.4253 -1.1636 9.1581 47 1 2.9128 -1.1773 11.1203 48 1 4.6389 0.5611 11.3688 49 1 4.8829 2.3083 9.6510 50 1 3.4015 2.3164 7.6840 51 1 0.5937 0.6042 4.6800 52 1 0.3824 -1.1384 5.0343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135126980.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:46 Heat of formation + Delta-G solvation = 15.701210 kcal Electronic energy + Delta-G solvation = -26153.942990 eV Core-core repulsion = 22731.255882 eV Total energy + Delta-G solvation = -3422.687108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.97835 -38.88683 -37.23748 -34.52657 -32.61122 -31.72165 -31.16809 -29.83886 -28.23324 -26.85798 -26.33707 -25.60903 -24.63310 -22.88466 -22.33851 -21.87421 -20.96247 -20.34884 -17.89826 -17.04476 -16.38647 -16.15714 -15.99669 -15.47953 -15.34134 -14.72454 -14.53637 -14.16765 -13.91470 -13.78402 -13.63608 -13.41885 -12.99021 -12.89987 -12.73547 -12.42723 -12.26797 -12.09491 -11.99279 -11.65964 -11.53317 -11.30184 -11.19020 -11.14931 -10.98009 -10.87303 -10.75406 -10.69366 -10.49512 -10.25816 -10.09578 -9.68439 -9.18372 -9.10580 -9.00249 -8.81242 -8.63550 -8.31623 -8.07882 -5.95868 -3.95936 1.06217 1.14436 3.32482 3.40344 3.42123 3.43813 3.93737 4.35765 4.46948 4.52485 4.58202 4.61209 4.73009 4.83101 4.89627 4.94839 5.06241 5.23097 5.26714 5.31593 5.38058 5.39935 5.46682 5.58122 5.66578 5.72919 5.74852 5.76242 5.77986 5.88526 5.93891 6.01238 6.06842 6.18435 6.24154 6.27019 6.31966 6.35235 6.51102 6.60342 6.66246 6.71860 6.79970 6.81522 6.83100 7.21033 7.24385 7.26901 7.41882 7.66626 7.71956 7.86354 8.04587 8.48966 9.09738 9.66867 11.15762 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.039709 B = 0.001976 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.952279 B =14166.864860 C =14247.618588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.680 5.680 15 C 0.085 3.915 16 H 0.086 0.914 17 C -0.155 4.155 18 C 0.037 3.963 19 N -0.507 5.507 20 C 0.082 3.918 21 C -0.073 4.073 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.114 4.114 27 C 0.044 3.956 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.012 0.988 35 H 0.015 0.985 36 H 0.258 0.742 37 H 0.024 0.976 38 H 0.066 0.934 39 H 0.338 0.662 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.045 0.955 45 H 0.084 0.916 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.117 0.883 51 H 0.052 0.948 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 4.830 27.639 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.057 4.057 14 N -0.311 5.311 15 C -0.027 4.027 16 H 0.105 0.895 17 C -0.195 4.195 18 C -0.091 4.091 19 N -0.231 5.231 20 C -0.046 4.046 21 C -0.074 4.074 22 C -0.118 4.118 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.084 4.084 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.158 0.842 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.102 0.898 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.135 0.865 51 H 0.071 0.929 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.350 3.879 27.723 27.996 hybrid contribution 0.628 1.418 -1.248 1.991 sum 0.978 5.297 26.475 27.018 Atomic orbital electron populations 1.21598 0.95016 1.00589 1.00111 1.20634 0.95851 0.94942 0.94487 1.21769 0.99656 0.96827 1.00349 1.19123 0.95874 0.95215 0.90184 1.21278 1.30642 1.11894 0.90610 0.92251 1.25029 0.95437 0.95148 0.99083 1.69976 1.37347 1.23224 1.23168 0.86607 0.78576 0.79735 0.83502 1.19789 1.21222 1.21154 1.22119 0.96455 0.98028 0.89116 1.60624 1.63305 1.06172 1.00995 1.22272 0.90964 0.99466 0.89965 0.89544 1.23102 0.99318 1.00895 0.96208 1.23073 0.94538 0.96027 0.95436 1.65440 1.05672 1.44491 1.07459 1.21198 0.96597 0.96600 0.90171 1.19739 0.96849 0.95262 0.95540 1.21039 0.99371 0.97745 0.93654 1.21158 0.95956 0.98795 0.98093 1.21146 0.98572 0.95288 0.99166 1.21119 0.99408 0.98923 0.94528 1.21070 0.95564 0.98682 0.97897 1.23108 0.95093 1.01398 0.88821 0.93956 0.92728 0.94147 0.94136 0.91713 0.94941 0.96942 0.96670 0.93230 0.95785 0.91525 0.84233 0.90966 0.91173 0.90412 0.94025 0.93661 0.89778 0.85973 0.86154 0.86300 0.86223 0.86458 0.92933 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.82 7.65 -34.44 -0.26 -14.08 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.07 1.21 4.48 -3.82 -0.02 1.19 16 14 N -0.68 -9.47 5.44 -105.26 -0.57 -10.04 16 15 C 0.08 1.03 3.36 -66.33 -0.22 0.81 16 16 H 0.09 1.13 7.86 -51.93 -0.41 0.72 16 17 C -0.16 -1.74 6.58 -25.35 -0.17 -1.91 16 18 C 0.04 0.38 5.48 -2.18 -0.01 0.37 16 19 N -0.51 -5.24 5.36 -231.41 -1.24 -6.48 16 20 C 0.08 0.74 4.97 -4.97 -0.02 0.71 16 21 C -0.07 -0.67 5.10 -104.62 -0.53 -1.20 16 22 C -0.10 -0.86 9.70 -39.58 -0.38 -1.25 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.11 -0.98 8.73 -39.58 -0.35 -1.32 16 27 C 0.04 0.48 6.20 -2.18 -0.01 0.46 16 28 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 29 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 33 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 38 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.34 4.57 6.26 -39.29 -0.25 4.33 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.81 7.64 -51.93 -0.40 0.41 16 42 H 0.08 0.80 7.81 -51.93 -0.41 0.40 16 43 H 0.04 0.40 7.82 -51.93 -0.41 0.00 16 44 H 0.05 0.40 7.82 -51.93 -0.41 -0.01 16 45 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 51 H 0.05 0.58 7.91 -51.93 -0.41 0.17 16 52 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -29.34 401.32 -12.38 -41.72 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -9.45 Total: 1.66 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -2.89 Total: -23.38 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -1.08 Total: -42.65 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.34 -12.38 -41.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135126980.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.426 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds