Wall clock time and date at job start Tue Mar 31 2020 11:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.09003 * 110.28760 * 324.32598 * 15 14 13 17 17 C 1.54264 * 110.32302 * 86.45396 * 15 14 13 18 18 C 1.54379 * 105.05895 * 118.89546 * 17 15 14 19 19 N 1.48560 * 104.59522 * 23.85388 * 18 17 15 20 20 C 1.46898 * 111.00344 * 200.96199 * 19 18 17 21 21 C 1.50705 * 109.46819 * 290.12542 * 20 19 18 22 22 C 1.38236 * 120.00061 * 269.72550 * 21 20 19 23 23 C 1.38239 * 120.00090 * 179.76629 * 22 21 20 24 24 C 1.38236 * 119.99883 * 0.48518 * 23 22 21 25 25 C 1.38239 * 120.00035 * 359.79062 * 24 23 22 26 26 C 1.38239 * 119.99878 * 89.99655 * 21 20 19 27 27 C 1.48568 * 104.22317 * 320.51634 * 19 18 17 28 28 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 29 29 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 30 30 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 33 33 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 34 34 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 36 36 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 38 38 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 39 39 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 40 40 H 1.08995 * 110.32183 * 237.78931 * 17 15 14 41 41 H 1.09002 * 110.31999 * 0.02562 * 17 15 14 42 42 H 1.08994 * 110.41529 * 142.63087 * 18 17 15 43 43 H 1.08999 * 110.41424 * 265.07463 * 18 17 15 44 44 H 1.08998 * 109.47232 * 50.11763 * 20 19 18 45 45 H 1.08994 * 109.47631 * 170.12327 * 20 19 18 46 46 H 1.07994 * 119.99841 * 359.97438 * 22 21 20 47 47 H 1.07997 * 119.99922 * 180.25146 * 23 22 21 48 48 H 1.07993 * 120.00148 * 179.76627 * 24 23 22 49 49 H 1.08001 * 120.00170 * 179.97438 * 25 24 23 50 50 H 1.07995 * 120.00048 * 0.02562 * 26 21 20 51 51 H 1.09003 * 110.40957 * 280.70768 * 27 19 18 52 52 H 1.08992 * 110.41156 * 158.26366 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 1 2.0552 -1.7740 3.5237 17 6 3.4153 -0.1640 4.0659 18 6 3.2235 0.4651 5.4626 19 7 2.0274 -0.2175 6.0196 20 6 1.4193 0.5787 7.0939 21 6 2.3260 0.5737 8.2976 22 6 2.1853 -0.4038 9.2649 23 6 3.0201 -0.4113 10.3667 24 6 3.9891 0.5647 10.5062 25 6 4.1261 1.5456 9.5418 26 6 3.2947 1.5499 8.4373 27 6 1.1052 -0.3412 4.8613 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7218 -1.2489 35 1 1.6767 -1.7491 -1.2491 36 1 2.8618 -1.8826 -4.7335 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7489 1.2494 39 1 1.8198 0.9437 2.4401 40 1 4.1323 -0.9835 4.1151 41 1 3.7492 0.5906 3.3537 42 1 4.0954 0.2750 6.0882 43 1 3.0435 1.5366 5.3754 44 1 1.2769 1.6034 6.7506 45 1 0.4548 0.1486 7.3637 46 1 1.4253 -1.1636 9.1581 47 1 2.9128 -1.1773 11.1203 48 1 4.6389 0.5611 11.3688 49 1 4.8829 2.3083 9.6510 50 1 3.4015 2.3164 7.6840 51 1 0.5937 0.6042 4.6800 52 1 0.3824 -1.1384 5.0343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135126980.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:46 Heat of formation + Delta-G solvation = -0.134204 kcal Electronic energy + Delta-G solvation = -26154.629665 eV Core-core repulsion = 22731.255882 eV Total energy + Delta-G solvation = -3423.373783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74022 -39.74861 -38.62230 -35.73875 -34.36324 -32.83412 -31.75011 -30.68403 -29.44400 -28.60101 -27.88781 -26.67479 -25.91054 -24.17402 -23.45292 -22.58755 -21.76335 -21.26036 -19.51877 -18.33454 -17.66011 -17.23846 -16.91932 -16.46347 -16.19015 -16.04858 -15.79045 -15.39761 -15.13589 -14.84044 -14.51870 -14.37162 -14.18752 -14.04871 -13.90788 -13.72981 -13.52734 -13.21323 -13.07803 -12.95212 -12.72358 -12.67648 -12.42537 -12.28665 -12.28234 -12.22859 -12.11867 -11.86459 -11.81068 -11.77731 -11.59829 -11.37230 -10.85680 -10.71109 -10.51098 -9.78321 -9.72239 -9.38737 -9.26527 -8.13935 -6.20854 0.45743 0.54898 1.40024 1.41072 1.53216 2.43584 2.74698 3.12148 3.19925 3.43314 3.65865 3.77525 3.97541 3.98497 4.08867 4.16976 4.20937 4.26505 4.30867 4.37892 4.39186 4.41166 4.54321 4.62643 4.67841 4.73836 4.78717 4.80225 4.82379 4.87344 4.95720 5.01772 5.05521 5.08740 5.14281 5.16663 5.20357 5.22700 5.23520 5.52527 5.54910 5.57941 5.59705 5.65208 5.66545 5.70317 5.81938 5.88325 5.93555 6.02198 6.16094 6.16858 6.37661 6.53976 6.94748 7.46448 8.98505 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.039709 B = 0.001976 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.952279 B =14166.864860 C =14247.618588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.066 0.934 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.086 3.914 14 N -0.672 5.672 15 C 0.084 3.916 16 H 0.075 0.925 17 C -0.152 4.152 18 C 0.045 3.955 19 N -0.514 5.514 20 C 0.085 3.915 21 C -0.087 4.087 22 C -0.113 4.113 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.124 4.124 27 C 0.052 3.948 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.067 0.933 34 H -0.017 1.017 35 H -0.017 1.017 36 H 0.259 0.741 37 H 0.018 0.982 38 H 0.055 0.945 39 H 0.344 0.656 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.127 0.873 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.123 0.877 51 H 0.055 0.945 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 6.481 29.194 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.044 4.044 14 N -0.304 5.304 15 C -0.027 4.027 16 H 0.094 0.906 17 C -0.192 4.192 18 C -0.083 4.083 19 N -0.238 5.238 20 C -0.043 4.043 21 C -0.087 4.087 22 C -0.132 4.132 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.076 4.076 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.164 0.836 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.145 0.855 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.154 0.846 50 H 0.141 0.859 51 H 0.074 0.926 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.227 5.546 29.301 29.822 hybrid contribution 0.840 0.866 -1.648 2.042 sum 0.613 6.412 27.653 28.393 Atomic orbital electron populations 1.21503 0.94274 1.00101 1.00528 1.20499 0.96318 0.95586 0.93181 1.21680 0.99436 0.95618 1.01162 1.19007 0.93923 0.94087 0.92768 1.21657 1.30061 1.11886 0.91432 0.91550 1.25944 0.95778 0.95962 1.02646 1.70117 1.38919 1.24963 1.23944 0.85512 0.78092 0.78805 0.79341 1.18411 1.20866 1.20900 1.21792 0.95882 0.97344 0.89338 1.60552 1.63140 1.06310 1.00403 1.22271 0.92066 0.98740 0.89595 0.90637 1.23038 0.98464 1.00740 0.96947 1.22996 0.94508 0.96316 0.94503 1.65431 1.05656 1.45209 1.07483 1.21199 0.96777 0.96591 0.89684 1.19823 0.97314 0.95791 0.95767 1.21225 0.99910 0.97992 0.94062 1.21435 0.95767 0.99323 0.98259 1.21458 0.98662 0.94955 0.99732 1.21399 0.99625 0.99434 0.94348 1.21230 0.95719 0.98856 0.98451 1.22993 0.94788 1.01544 0.88282 0.91296 0.94342 0.95124 0.94473 0.93482 0.91440 0.99829 0.99836 0.93203 0.96420 0.92656 0.83560 0.91440 0.91279 0.90572 0.93207 0.93260 0.89212 0.85493 0.84498 0.84383 0.84610 0.85876 0.92636 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.01 8.06 71.98 0.58 -3.43 16 2 C -0.06 -2.17 0.60 -52.18 -0.03 -2.21 16 3 C -0.12 -4.30 7.89 71.98 0.57 -3.74 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.37 7.65 25.60 0.20 -28.17 16 6 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 8 N -0.94 -57.61 13.29 21.45 0.28 -57.32 16 9 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.09 2.88 4.48 86.30 0.39 3.27 16 14 N -0.67 -17.62 5.44 -486.92 -2.65 -20.27 16 15 C 0.08 1.94 3.36 45.81 0.15 2.10 16 16 H 0.08 1.93 7.86 -2.39 -0.02 1.91 16 17 C -0.15 -3.22 6.58 31.49 0.21 -3.01 16 18 C 0.04 0.83 5.48 86.45 0.47 1.31 16 19 N -0.51 -9.79 5.36 -886.05 -4.75 -14.54 16 20 C 0.09 1.38 4.97 85.56 0.42 1.81 16 21 C -0.09 -1.46 5.10 -19.86 -0.10 -1.56 16 22 C -0.11 -1.83 9.70 22.27 0.22 -1.62 16 23 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 24 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 25 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 26 C -0.12 -1.95 8.73 22.27 0.19 -1.76 16 27 C 0.05 1.03 6.20 86.45 0.54 1.57 16 28 H 0.07 2.21 7.60 -2.39 -0.02 2.19 16 29 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 30 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 33 H 0.07 1.91 6.57 -2.39 -0.02 1.89 16 34 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 36 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.02 0.61 8.11 -2.39 -0.02 0.59 16 38 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 39 H 0.34 8.41 6.26 -89.69 -0.56 7.85 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.48 7.64 -2.39 -0.02 1.47 16 42 H 0.08 1.46 7.81 -2.39 -0.02 1.45 16 43 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 44 H 0.05 0.76 7.82 -2.39 -0.02 0.74 16 45 H 0.09 1.34 8.07 -2.39 -0.02 1.32 16 46 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 47 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 48 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 50 H 0.12 1.70 8.06 -2.91 -0.02 1.68 16 51 H 0.06 1.09 7.91 -2.39 -0.02 1.07 16 52 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.63 401.32 0.27 -63.35 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.30 Total: 20.10 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 5.06 Total: -37.95 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -7.12 Total: -92.13 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.63 0.27 -63.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135126980.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.220 kcal (2) G-P(sol) polarization free energy of solvation -63.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds