Wall clock time and date at job start Tue Mar 31 2020 11:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47045 * 2 1 4 4 H 1.08996 * 109.46590 * 305.00277 * 3 2 1 5 5 C 1.50698 * 109.47165 * 185.00805 * 3 2 1 6 6 H 1.07996 * 119.99916 * 239.99578 * 5 3 2 7 7 C 1.37882 * 119.99963 * 59.99576 * 5 3 2 8 8 N 1.31513 * 120.00290 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47470 * 59.99855 * 9 7 5 11 11 H 1.48504 * 109.47166 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46922 * 299.99788 * 9 7 5 13 13 N 1.46891 * 109.47315 * 65.00365 * 3 2 1 14 14 C 1.46894 * 111.00044 * 204.12181 * 13 3 2 15 15 H 1.08998 * 109.50756 * 325.51419 * 14 13 3 16 16 C 1.53124 * 109.50696 * 205.43300 * 14 13 3 17 17 C 1.53117 * 109.16484 * 182.40632 * 16 14 13 18 18 H 1.09004 * 109.49997 * 297.71313 * 17 16 14 19 19 C 1.52998 * 109.50471 * 177.63362 * 17 16 14 20 20 C 1.53034 * 109.27899 * 57.65484 * 17 16 14 21 21 N 1.46855 * 109.52227 * 300.82219 * 20 17 16 22 22 C 1.46900 * 110.99801 * 185.83798 * 21 20 17 23 23 C 1.50700 * 109.47089 * 293.95268 * 22 21 20 24 24 C 1.38231 * 119.99862 * 269.72123 * 23 22 21 25 25 C 1.38235 * 119.99834 * 179.78690 * 24 23 22 26 26 C 1.38242 * 120.00012 * 0.47591 * 25 24 23 27 27 C 1.38238 * 119.99837 * 359.75856 * 26 25 24 28 28 C 1.38233 * 119.99809 * 0.03018 * 27 26 25 29 29 C 1.46846 * 111.19850 * 61.74054 * 21 20 17 30 30 H 1.09001 * 109.47053 * 184.43236 * 1 2 3 31 31 H 1.09001 * 109.47373 * 304.42571 * 1 2 3 32 32 H 1.08998 * 109.47185 * 64.43170 * 1 2 3 33 33 H 1.08992 * 109.47598 * 239.99491 * 2 1 3 34 34 H 1.09002 * 109.47129 * 119.99582 * 2 1 3 35 35 H 0.96998 * 119.99915 * 180.02562 * 8 7 5 36 36 H 1.00909 * 111.00322 * 80.17038 * 13 3 2 37 37 H 1.09001 * 109.51822 * 302.31162 * 16 14 13 38 38 H 1.09002 * 109.51876 * 62.43513 * 16 14 13 39 39 H 1.09008 * 109.46982 * 59.99884 * 19 17 16 40 40 H 1.08994 * 109.46855 * 179.97438 * 19 17 16 41 41 H 1.09001 * 109.47049 * 300.00357 * 19 17 16 42 42 H 1.09000 * 109.46343 * 60.83779 * 20 17 16 43 43 H 1.08999 * 109.46429 * 180.81078 * 20 17 16 44 44 H 1.09004 * 109.46949 * 53.95751 * 22 21 20 45 45 H 1.09002 * 109.46675 * 173.95492 * 22 21 20 46 46 H 1.07997 * 120.00167 * 0.02562 * 24 23 22 47 47 H 1.08000 * 120.00206 * 180.25909 * 25 24 23 48 48 H 1.08001 * 120.00208 * 179.78768 * 26 25 24 49 49 H 1.07991 * 120.00259 * 180.02562 * 27 26 25 50 50 H 1.08000 * 119.99900 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.46070 * 178.23905 * 29 21 20 52 52 H 1.09006 * 109.46317 * 58.27425 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1240 6 1 4.1471 1.8890 0.6520 7 6 4.1430 0.8784 -1.2283 8 7 3.4059 0.3366 -2.1731 9 14 6.0047 0.8801 -1.3816 10 1 6.5966 0.1454 -0.2348 11 1 6.3975 0.2168 -2.6509 12 1 6.5001 2.2801 -1.3814 13 7 1.6514 2.0993 1.2552 14 6 1.5928 3.5577 1.0900 15 1 2.3652 3.8761 0.3899 16 6 1.8198 4.2352 2.4444 17 6 1.6975 5.7520 2.2744 18 1 2.4712 6.1053 1.5928 19 6 1.8645 6.4335 3.6341 20 6 0.3190 6.0866 1.7002 21 7 0.1510 5.4157 0.4047 22 6 -1.1039 5.8240 -0.2407 23 6 -2.2716 5.3292 0.5734 24 6 -2.8183 4.0865 0.3134 25 6 -3.8865 3.6307 1.0630 26 6 -4.4145 4.4219 2.0663 27 6 -3.8708 5.6667 2.3231 28 6 -2.7998 6.1205 1.5763 29 6 0.2174 3.9560 0.5501 30 1 -0.3633 -1.0246 0.0794 31 1 -0.3634 0.5810 0.8477 32 1 -0.3633 0.4435 -0.9270 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8900 35 1 3.8290 -0.0619 -2.9497 36 1 2.2770 1.8452 2.0050 37 1 1.0711 3.8868 3.1558 38 1 2.8154 3.9881 2.8129 39 1 2.8454 6.1919 4.0435 40 1 1.7778 7.5131 3.5123 41 1 1.0897 6.0807 4.3148 42 1 -0.4539 5.7453 2.3889 43 1 0.2340 7.1648 1.5645 44 1 -1.1416 6.9114 -0.3065 45 1 -1.1527 5.3974 -1.2425 46 1 -2.4083 3.4700 -0.4729 47 1 -4.3110 2.6581 0.8627 48 1 -5.2513 4.0673 2.6497 49 1 -4.2829 6.2846 3.1070 50 1 -2.3753 7.0932 1.7766 51 1 0.0585 3.4867 -0.4208 52 1 -0.5551 3.6246 1.2442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136959140.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:42 Heat of formation + Delta-G solvation = 10.731035 kcal Electronic energy + Delta-G solvation = -28004.588268 eV Core-core repulsion = 24581.685637 eV Total energy + Delta-G solvation = -3422.902631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99978 -38.38046 -35.94975 -34.49194 -32.69667 -31.34368 -30.91726 -30.84726 -28.52991 -26.62107 -26.23306 -25.70736 -22.86162 -22.66052 -22.51563 -20.90865 -20.58042 -19.37661 -19.09755 -16.77181 -16.52488 -15.68930 -15.36588 -15.12654 -14.80180 -14.70742 -14.50420 -14.09729 -13.88818 -13.48430 -13.41943 -13.10618 -12.80713 -12.65699 -12.48038 -12.27879 -12.09896 -11.97573 -11.62990 -11.41977 -11.27473 -11.24495 -11.15406 -11.11626 -10.86313 -10.75319 -10.62063 -10.41616 -10.23319 -10.10717 -9.81542 -9.53907 -9.35819 -8.99738 -8.88813 -8.75050 -8.32748 -8.05372 -7.20914 -5.95600 -4.08116 1.32863 1.40270 3.30597 3.35607 3.38183 3.74534 4.20372 4.42865 4.78961 4.81743 4.93079 4.98273 5.08972 5.12408 5.16525 5.29551 5.34714 5.48540 5.50096 5.62061 5.67195 5.71824 5.74572 5.82667 5.84072 5.89385 6.01832 6.03109 6.08306 6.18896 6.20042 6.33265 6.34805 6.41230 6.43760 6.49524 6.51699 6.53746 6.62150 6.69524 6.73926 6.94952 7.00074 7.16510 7.19588 7.33353 7.34984 7.50236 7.65239 7.81816 8.13427 8.22071 8.39467 8.71684 9.04577 9.59250 11.04347 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.004122 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.213238 B = 6791.005924 C = 7940.292341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.218 3.782 4 H 0.033 0.967 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.097 3.903 15 H 0.055 0.945 16 C -0.114 4.114 17 C -0.088 4.088 18 H 0.077 0.923 19 C -0.143 4.143 20 C 0.061 3.939 21 N -0.527 5.527 22 C 0.093 3.907 23 C -0.116 4.116 24 C -0.100 4.100 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.112 4.112 29 C 0.072 3.928 30 H 0.023 0.977 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.089 0.911 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.329 0.671 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.071 0.929 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.191 11.414 8.146 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.110 3.890 4 H 0.051 0.949 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.014 4.014 15 H 0.073 0.927 16 C -0.152 4.152 17 C -0.108 4.108 18 H 0.095 0.905 19 C -0.200 4.200 20 C -0.067 4.067 21 N -0.249 5.249 22 C -0.035 4.035 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.144 4.144 28 C -0.130 4.130 29 C -0.056 4.056 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.135 0.865 49 H 0.135 0.865 50 H 0.135 0.865 51 H 0.089 0.911 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.434 11.363 7.526 18.448 hybrid contribution 1.347 -0.174 0.349 1.402 sum -11.087 11.189 7.875 17.610 Atomic orbital electron populations 1.21703 0.99138 0.98357 1.00229 1.21497 0.91995 0.99441 1.01555 1.19136 0.92630 0.91015 0.86251 0.94932 1.21827 0.92837 1.38072 1.05491 0.93048 1.24909 0.97742 0.95040 0.95711 1.69862 1.34811 1.38254 1.09428 0.86749 0.86311 0.78170 0.77288 1.20375 1.21286 1.20406 1.60797 1.56176 1.04938 1.09694 1.21246 0.95638 0.89507 0.94976 0.92678 1.21818 1.01303 0.94018 0.98105 1.21125 0.97333 0.95884 0.96421 0.90501 1.21769 1.01609 0.99879 0.96787 1.22141 0.96583 0.97999 0.89939 1.62254 1.31471 1.08619 1.22560 1.21257 0.84634 1.00425 0.97188 1.20732 0.97824 0.95221 0.98014 1.21170 0.95619 0.95471 0.99621 1.21172 0.96790 0.99669 0.96066 1.21118 1.00166 0.94755 0.98166 1.21086 0.97009 0.96445 0.99824 1.21025 0.96467 0.99532 0.96005 1.22087 0.97611 0.85048 1.00833 0.95801 0.93192 0.94682 0.89242 0.95264 0.92908 0.85439 0.92252 0.92253 0.92578 0.92990 0.93008 0.94587 0.91633 0.90277 0.89794 0.85885 0.86143 0.86462 0.86489 0.86516 0.91061 0.94233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.85 37.15 0.37 -2.44 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.29 1.79 -68.87 -0.12 5.16 16 4 H 0.03 0.89 7.17 -51.93 -0.37 0.51 16 5 C -0.54 -14.53 8.22 -34.44 -0.28 -14.82 16 6 H 0.05 1.37 7.75 -52.49 -0.41 0.97 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -24.95 11.29 55.43 0.63 -24.32 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 N -0.69 -14.12 5.43 -100.88 -0.55 -14.66 16 14 C 0.10 1.81 2.46 -67.63 -0.17 1.65 16 15 H 0.06 1.22 7.60 -51.93 -0.39 0.82 16 16 C -0.11 -1.79 4.55 -26.61 -0.12 -1.91 16 17 C -0.09 -1.19 2.88 -90.54 -0.26 -1.45 16 18 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 19 C -0.14 -1.56 9.20 37.16 0.34 -1.22 16 20 C 0.06 0.80 4.11 -3.83 -0.02 0.78 16 21 N -0.53 -7.76 4.86 -236.10 -1.15 -8.91 16 22 C 0.09 1.17 5.56 -4.98 -0.03 1.14 16 23 C -0.12 -1.44 4.03 -104.62 -0.42 -1.87 16 24 C -0.10 -1.30 8.03 -39.58 -0.32 -1.61 16 25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.11 -1.26 8.12 -39.58 -0.32 -1.58 16 29 C 0.07 1.23 4.04 -3.83 -0.02 1.22 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.99 7.63 -51.93 -0.40 0.59 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.33 6.78 8.07 -39.29 -0.32 6.46 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.49 6.55 -51.93 -0.34 0.15 16 43 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 44 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 45 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 46 H 0.12 1.63 8.03 -52.49 -0.42 1.20 16 47 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 49 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 50 H 0.12 1.14 8.03 -52.49 -0.42 0.72 16 51 H 0.07 1.36 7.45 -51.93 -0.39 0.97 16 52 H 0.04 0.70 6.48 -51.93 -0.34 0.36 16 LS Contribution 396.81 15.07 5.98 5.98 Total: -1.00 -27.59 396.81 -12.48 -40.06 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -9.57 Total: 8.77 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -2.80 Total: -23.11 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -1.07 Total: -47.90 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -27.59 -12.48 -40.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136959140.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.792 kcal (2) G-P(sol) polarization free energy of solvation -27.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds