Wall clock time and date at job start Tue Mar 31 2020 11:17:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53005 * 109.47045 * 2 1
4 4 H 1.08996 * 109.46590 * 305.00277 * 3 2 1
5 5 C 1.50698 * 109.47165 * 185.00805 * 3 2 1
6 6 H 1.07996 * 119.99916 * 239.99578 * 5 3 2
7 7 C 1.37882 * 119.99963 * 59.99576 * 5 3 2
8 8 N 1.31513 * 120.00290 * 359.97438 * 7 5 3
9 9 Si 1.86800 * 119.99735 * 180.02562 * 7 5 3
10 10 H 1.48497 * 109.47470 * 59.99855 * 9 7 5
11 11 H 1.48504 * 109.47166 * 180.02562 * 9 7 5
12 12 H 1.48505 * 109.46922 * 299.99788 * 9 7 5
13 13 N 1.46891 * 109.47315 * 65.00365 * 3 2 1
14 14 C 1.46894 * 111.00044 * 204.12181 * 13 3 2
15 15 H 1.08998 * 109.50756 * 325.51419 * 14 13 3
16 16 C 1.53124 * 109.50696 * 205.43300 * 14 13 3
17 17 C 1.53117 * 109.16484 * 182.40632 * 16 14 13
18 18 H 1.09004 * 109.49997 * 297.71313 * 17 16 14
19 19 C 1.52998 * 109.50471 * 177.63362 * 17 16 14
20 20 C 1.53034 * 109.27899 * 57.65484 * 17 16 14
21 21 N 1.46855 * 109.52227 * 300.82219 * 20 17 16
22 22 C 1.46900 * 110.99801 * 185.83798 * 21 20 17
23 23 C 1.50700 * 109.47089 * 293.95268 * 22 21 20
24 24 C 1.38231 * 119.99862 * 269.72123 * 23 22 21
25 25 C 1.38235 * 119.99834 * 179.78690 * 24 23 22
26 26 C 1.38242 * 120.00012 * 0.47591 * 25 24 23
27 27 C 1.38238 * 119.99837 * 359.75856 * 26 25 24
28 28 C 1.38233 * 119.99809 * 0.03018 * 27 26 25
29 29 C 1.46846 * 111.19850 * 61.74054 * 21 20 17
30 30 H 1.09001 * 109.47053 * 184.43236 * 1 2 3
31 31 H 1.09001 * 109.47373 * 304.42571 * 1 2 3
32 32 H 1.08998 * 109.47185 * 64.43170 * 1 2 3
33 33 H 1.08992 * 109.47598 * 239.99491 * 2 1 3
34 34 H 1.09002 * 109.47129 * 119.99582 * 2 1 3
35 35 H 0.96998 * 119.99915 * 180.02562 * 8 7 5
36 36 H 1.00909 * 111.00322 * 80.17038 * 13 3 2
37 37 H 1.09001 * 109.51822 * 302.31162 * 16 14 13
38 38 H 1.09002 * 109.51876 * 62.43513 * 16 14 13
39 39 H 1.09008 * 109.46982 * 59.99884 * 19 17 16
40 40 H 1.08994 * 109.46855 * 179.97438 * 19 17 16
41 41 H 1.09001 * 109.47049 * 300.00357 * 19 17 16
42 42 H 1.09000 * 109.46343 * 60.83779 * 20 17 16
43 43 H 1.08999 * 109.46429 * 180.81078 * 20 17 16
44 44 H 1.09004 * 109.46949 * 53.95751 * 22 21 20
45 45 H 1.09002 * 109.46675 * 173.95492 * 22 21 20
46 46 H 1.07997 * 120.00167 * 0.02562 * 24 23 22
47 47 H 1.08000 * 120.00206 * 180.25909 * 25 24 23
48 48 H 1.08001 * 120.00208 * 179.78768 * 26 25 24
49 49 H 1.07991 * 120.00259 * 180.02562 * 27 26 25
50 50 H 1.08000 * 119.99900 * 179.97438 * 28 27 26
51 51 H 1.09001 * 109.46070 * 178.23905 * 29 21 20
52 52 H 1.09006 * 109.46317 * 58.27425 * 29 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6052 1.9815 -0.8418
5 6 3.5418 1.4444 -0.1240
6 1 4.1471 1.8890 0.6520
7 6 4.1430 0.8784 -1.2283
8 7 3.4059 0.3366 -2.1731
9 14 6.0047 0.8801 -1.3816
10 1 6.5966 0.1454 -0.2348
11 1 6.3975 0.2168 -2.6509
12 1 6.5001 2.2801 -1.3814
13 7 1.6514 2.0993 1.2552
14 6 1.5928 3.5577 1.0900
15 1 2.3652 3.8761 0.3899
16 6 1.8198 4.2352 2.4444
17 6 1.6975 5.7520 2.2744
18 1 2.4712 6.1053 1.5928
19 6 1.8645 6.4335 3.6341
20 6 0.3190 6.0866 1.7002
21 7 0.1510 5.4157 0.4047
22 6 -1.1039 5.8240 -0.2407
23 6 -2.2716 5.3292 0.5734
24 6 -2.8183 4.0865 0.3134
25 6 -3.8865 3.6307 1.0630
26 6 -4.4145 4.4219 2.0663
27 6 -3.8708 5.6667 2.3231
28 6 -2.7998 6.1205 1.5763
29 6 0.2174 3.9560 0.5501
30 1 -0.3633 -1.0246 0.0794
31 1 -0.3634 0.5810 0.8477
32 1 -0.3633 0.4435 -0.9270
33 1 1.8933 -0.5139 -0.8898
34 1 1.8933 -0.5138 0.8900
35 1 3.8290 -0.0619 -2.9497
36 1 2.2770 1.8452 2.0050
37 1 1.0711 3.8868 3.1558
38 1 2.8154 3.9881 2.8129
39 1 2.8454 6.1919 4.0435
40 1 1.7778 7.5131 3.5123
41 1 1.0897 6.0807 4.3148
42 1 -0.4539 5.7453 2.3889
43 1 0.2340 7.1648 1.5645
44 1 -1.1416 6.9114 -0.3065
45 1 -1.1527 5.3974 -1.2425
46 1 -2.4083 3.4700 -0.4729
47 1 -4.3110 2.6581 0.8627
48 1 -5.2513 4.0673 2.6497
49 1 -4.2829 6.2846 3.1070
50 1 -2.3753 7.0932 1.7766
51 1 0.0585 3.4867 -0.4208
52 1 -0.5551 3.6246 1.2442
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000136959140.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:42
Heat of formation + Delta-G solvation = 10.731035 kcal
Electronic energy + Delta-G solvation = -28004.588268 eV
Core-core repulsion = 24581.685637 eV
Total energy + Delta-G solvation = -3422.902631 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-39.99978 -38.38046 -35.94975 -34.49194 -32.69667 -31.34368 -30.91726 -30.84726
-28.52991 -26.62107 -26.23306 -25.70736 -22.86162 -22.66052 -22.51563 -20.90865
-20.58042 -19.37661 -19.09755 -16.77181 -16.52488 -15.68930 -15.36588 -15.12654
-14.80180 -14.70742 -14.50420 -14.09729 -13.88818 -13.48430 -13.41943 -13.10618
-12.80713 -12.65699 -12.48038 -12.27879 -12.09896 -11.97573 -11.62990 -11.41977
-11.27473 -11.24495 -11.15406 -11.11626 -10.86313 -10.75319 -10.62063 -10.41616
-10.23319 -10.10717 -9.81542 -9.53907 -9.35819 -8.99738 -8.88813 -8.75050
-8.32748 -8.05372 -7.20914 -5.95600 -4.08116 1.32863 1.40270 3.30597
3.35607 3.38183 3.74534 4.20372 4.42865 4.78961 4.81743 4.93079
4.98273 5.08972 5.12408 5.16525 5.29551 5.34714 5.48540 5.50096
5.62061 5.67195 5.71824 5.74572 5.82667 5.84072 5.89385 6.01832
6.03109 6.08306 6.18896 6.20042 6.33265 6.34805 6.41230 6.43760
6.49524 6.51699 6.53746 6.62150 6.69524 6.73926 6.94952 7.00074
7.16510 7.19588 7.33353 7.34984 7.50236 7.65239 7.81816 8.13427
8.22071 8.39467 8.71684 9.04577 9.59250 11.04347
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.013905 B = 0.004122 C = 0.003525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2013.213238 B = 6791.005924 C = 7940.292341
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.106 4.106
3 C 0.218 3.782
4 H 0.033 0.967
5 C -0.543 4.543
6 H 0.051 0.949
7 C 0.068 3.932
8 N -0.885 5.885
9 Si 0.887 3.113
10 H -0.278 1.278
11 H -0.287 1.287
12 H -0.278 1.278
13 N -0.686 5.686
14 C 0.097 3.903
15 H 0.055 0.945
16 C -0.114 4.114
17 C -0.088 4.088
18 H 0.077 0.923
19 C -0.143 4.143
20 C 0.061 3.939
21 N -0.527 5.527
22 C 0.093 3.907
23 C -0.116 4.116
24 C -0.100 4.100
25 C -0.119 4.119
26 C -0.124 4.124
27 C -0.126 4.126
28 C -0.112 4.112
29 C 0.072 3.928
30 H 0.023 0.977
31 H 0.049 0.951
32 H 0.034 0.966
33 H 0.089 0.911
34 H 0.029 0.971
35 H 0.261 0.739
36 H 0.329 0.671
37 H 0.059 0.941
38 H 0.059 0.941
39 H 0.055 0.945
40 H 0.051 0.949
41 H 0.051 0.949
42 H 0.036 0.964
43 H 0.065 0.935
44 H 0.079 0.921
45 H 0.084 0.916
46 H 0.123 0.877
47 H 0.121 0.879
48 H 0.117 0.883
49 H 0.117 0.883
50 H 0.117 0.883
51 H 0.071 0.929
52 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.191 11.414 8.146 18.581
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.145 4.145
3 C 0.110 3.890
4 H 0.051 0.949
5 C -0.582 4.582
6 H 0.070 0.930
7 C -0.134 4.134
8 N -0.524 5.524
9 Si 0.715 3.285
10 H -0.204 1.204
11 H -0.213 1.213
12 H -0.204 1.204
13 N -0.316 5.316
14 C -0.014 4.014
15 H 0.073 0.927
16 C -0.152 4.152
17 C -0.108 4.108
18 H 0.095 0.905
19 C -0.200 4.200
20 C -0.067 4.067
21 N -0.249 5.249
22 C -0.035 4.035
23 C -0.118 4.118
24 C -0.119 4.119
25 C -0.137 4.137
26 C -0.142 4.142
27 C -0.144 4.144
28 C -0.130 4.130
29 C -0.056 4.056
30 H 0.042 0.958
31 H 0.068 0.932
32 H 0.053 0.947
33 H 0.108 0.892
34 H 0.047 0.953
35 H 0.071 0.929
36 H 0.146 0.854
37 H 0.077 0.923
38 H 0.077 0.923
39 H 0.074 0.926
40 H 0.070 0.930
41 H 0.070 0.930
42 H 0.054 0.946
43 H 0.084 0.916
44 H 0.097 0.903
45 H 0.102 0.898
46 H 0.141 0.859
47 H 0.139 0.861
48 H 0.135 0.865
49 H 0.135 0.865
50 H 0.135 0.865
51 H 0.089 0.911
52 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges -12.434 11.363 7.526 18.448
hybrid contribution 1.347 -0.174 0.349 1.402
sum -11.087 11.189 7.875 17.610
Atomic orbital electron populations
1.21703 0.99138 0.98357 1.00229 1.21497 0.91995 0.99441 1.01555
1.19136 0.92630 0.91015 0.86251 0.94932 1.21827 0.92837 1.38072
1.05491 0.93048 1.24909 0.97742 0.95040 0.95711 1.69862 1.34811
1.38254 1.09428 0.86749 0.86311 0.78170 0.77288 1.20375 1.21286
1.20406 1.60797 1.56176 1.04938 1.09694 1.21246 0.95638 0.89507
0.94976 0.92678 1.21818 1.01303 0.94018 0.98105 1.21125 0.97333
0.95884 0.96421 0.90501 1.21769 1.01609 0.99879 0.96787 1.22141
0.96583 0.97999 0.89939 1.62254 1.31471 1.08619 1.22560 1.21257
0.84634 1.00425 0.97188 1.20732 0.97824 0.95221 0.98014 1.21170
0.95619 0.95471 0.99621 1.21172 0.96790 0.99669 0.96066 1.21118
1.00166 0.94755 0.98166 1.21086 0.97009 0.96445 0.99824 1.21025
0.96467 0.99532 0.96005 1.22087 0.97611 0.85048 1.00833 0.95801
0.93192 0.94682 0.89242 0.95264 0.92908 0.85439 0.92252 0.92253
0.92578 0.92990 0.93008 0.94587 0.91633 0.90277 0.89794 0.85885
0.86143 0.86462 0.86489 0.86516 0.91061 0.94233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.80 9.85 37.15 0.37 -2.44 16
2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16
3 C 0.22 5.29 1.79 -68.87 -0.12 5.16 16
4 H 0.03 0.89 7.17 -51.93 -0.37 0.51 16
5 C -0.54 -14.53 8.22 -34.44 -0.28 -14.82 16
6 H 0.05 1.37 7.75 -52.49 -0.41 0.97 16
7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16
8 N -0.89 -24.95 11.29 55.43 0.63 -24.32 16
9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16
10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16
11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
13 N -0.69 -14.12 5.43 -100.88 -0.55 -14.66 16
14 C 0.10 1.81 2.46 -67.63 -0.17 1.65 16
15 H 0.06 1.22 7.60 -51.93 -0.39 0.82 16
16 C -0.11 -1.79 4.55 -26.61 -0.12 -1.91 16
17 C -0.09 -1.19 2.88 -90.54 -0.26 -1.45 16
18 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
19 C -0.14 -1.56 9.20 37.16 0.34 -1.22 16
20 C 0.06 0.80 4.11 -3.83 -0.02 0.78 16
21 N -0.53 -7.76 4.86 -236.10 -1.15 -8.91 16
22 C 0.09 1.17 5.56 -4.98 -0.03 1.14 16
23 C -0.12 -1.44 4.03 -104.62 -0.42 -1.87 16
24 C -0.10 -1.30 8.03 -39.58 -0.32 -1.61 16
25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16
26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16
27 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16
28 C -0.11 -1.26 8.12 -39.58 -0.32 -1.58 16
29 C 0.07 1.23 4.04 -3.83 -0.02 1.22 16
30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
31 H 0.05 0.99 7.63 -51.93 -0.40 0.59 16
32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16
34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
36 H 0.33 6.78 8.07 -39.29 -0.32 6.46 16
37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
39 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16
40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
42 H 0.04 0.49 6.55 -51.93 -0.34 0.15 16
43 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16
44 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16
45 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16
46 H 0.12 1.63 8.03 -52.49 -0.42 1.20 16
47 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16
48 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16
49 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
50 H 0.12 1.14 8.03 -52.49 -0.42 0.72 16
51 H 0.07 1.36 7.45 -51.93 -0.39 0.97 16
52 H 0.04 0.70 6.48 -51.93 -0.34 0.36 16
LS Contribution 396.81 15.07 5.98 5.98
Total: -1.00 -27.59 396.81 -12.48 -40.06
By element:
Atomic # 1 Polarization: 18.34 SS G_CDS: -9.57 Total: 8.77 kcal
Atomic # 6 Polarization: -20.31 SS G_CDS: -2.80 Total: -23.11 kcal
Atomic # 7 Polarization: -46.83 SS G_CDS: -1.07 Total: -47.90 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -27.59 -12.48 -40.06 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000136959140.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.792 kcal
(2) G-P(sol) polarization free energy of solvation -27.585 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.476 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.731 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds