Wall clock time and date at job start Tue Mar 31 2020 11:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47045 * 2 1 4 4 H 1.08996 * 109.46590 * 305.00277 * 3 2 1 5 5 C 1.50698 * 109.47165 * 185.00805 * 3 2 1 6 6 H 1.07996 * 119.99916 * 239.99578 * 5 3 2 7 7 C 1.37882 * 119.99963 * 59.99576 * 5 3 2 8 8 N 1.31513 * 120.00290 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47470 * 59.99855 * 9 7 5 11 11 H 1.48504 * 109.47166 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46922 * 299.99788 * 9 7 5 13 13 N 1.46891 * 109.47315 * 65.00365 * 3 2 1 14 14 C 1.46894 * 111.00044 * 204.12181 * 13 3 2 15 15 H 1.08998 * 109.50756 * 325.51419 * 14 13 3 16 16 C 1.53124 * 109.50696 * 205.43300 * 14 13 3 17 17 C 1.53117 * 109.16484 * 182.40632 * 16 14 13 18 18 H 1.09004 * 109.49997 * 297.71313 * 17 16 14 19 19 C 1.52998 * 109.50471 * 177.63362 * 17 16 14 20 20 C 1.53034 * 109.27899 * 57.65484 * 17 16 14 21 21 N 1.46855 * 109.52227 * 300.82219 * 20 17 16 22 22 C 1.46900 * 110.99801 * 185.83798 * 21 20 17 23 23 C 1.50700 * 109.47089 * 293.95268 * 22 21 20 24 24 C 1.38231 * 119.99862 * 269.72123 * 23 22 21 25 25 C 1.38235 * 119.99834 * 179.78690 * 24 23 22 26 26 C 1.38242 * 120.00012 * 0.47591 * 25 24 23 27 27 C 1.38238 * 119.99837 * 359.75856 * 26 25 24 28 28 C 1.38233 * 119.99809 * 0.03018 * 27 26 25 29 29 C 1.46846 * 111.19850 * 61.74054 * 21 20 17 30 30 H 1.09001 * 109.47053 * 184.43236 * 1 2 3 31 31 H 1.09001 * 109.47373 * 304.42571 * 1 2 3 32 32 H 1.08998 * 109.47185 * 64.43170 * 1 2 3 33 33 H 1.08992 * 109.47598 * 239.99491 * 2 1 3 34 34 H 1.09002 * 109.47129 * 119.99582 * 2 1 3 35 35 H 0.96998 * 119.99915 * 180.02562 * 8 7 5 36 36 H 1.00909 * 111.00322 * 80.17038 * 13 3 2 37 37 H 1.09001 * 109.51822 * 302.31162 * 16 14 13 38 38 H 1.09002 * 109.51876 * 62.43513 * 16 14 13 39 39 H 1.09008 * 109.46982 * 59.99884 * 19 17 16 40 40 H 1.08994 * 109.46855 * 179.97438 * 19 17 16 41 41 H 1.09001 * 109.47049 * 300.00357 * 19 17 16 42 42 H 1.09000 * 109.46343 * 60.83779 * 20 17 16 43 43 H 1.08999 * 109.46429 * 180.81078 * 20 17 16 44 44 H 1.09004 * 109.46949 * 53.95751 * 22 21 20 45 45 H 1.09002 * 109.46675 * 173.95492 * 22 21 20 46 46 H 1.07997 * 120.00167 * 0.02562 * 24 23 22 47 47 H 1.08000 * 120.00206 * 180.25909 * 25 24 23 48 48 H 1.08001 * 120.00208 * 179.78768 * 26 25 24 49 49 H 1.07991 * 120.00259 * 180.02562 * 27 26 25 50 50 H 1.08000 * 119.99900 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.46070 * 178.23905 * 29 21 20 52 52 H 1.09006 * 109.46317 * 58.27425 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1240 6 1 4.1471 1.8890 0.6520 7 6 4.1430 0.8784 -1.2283 8 7 3.4059 0.3366 -2.1731 9 14 6.0047 0.8801 -1.3816 10 1 6.5966 0.1454 -0.2348 11 1 6.3975 0.2168 -2.6509 12 1 6.5001 2.2801 -1.3814 13 7 1.6514 2.0993 1.2552 14 6 1.5928 3.5577 1.0900 15 1 2.3652 3.8761 0.3899 16 6 1.8198 4.2352 2.4444 17 6 1.6975 5.7520 2.2744 18 1 2.4712 6.1053 1.5928 19 6 1.8645 6.4335 3.6341 20 6 0.3190 6.0866 1.7002 21 7 0.1510 5.4157 0.4047 22 6 -1.1039 5.8240 -0.2407 23 6 -2.2716 5.3292 0.5734 24 6 -2.8183 4.0865 0.3134 25 6 -3.8865 3.6307 1.0630 26 6 -4.4145 4.4219 2.0663 27 6 -3.8708 5.6667 2.3231 28 6 -2.7998 6.1205 1.5763 29 6 0.2174 3.9560 0.5501 30 1 -0.3633 -1.0246 0.0794 31 1 -0.3634 0.5810 0.8477 32 1 -0.3633 0.4435 -0.9270 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8900 35 1 3.8290 -0.0619 -2.9497 36 1 2.2770 1.8452 2.0050 37 1 1.0711 3.8868 3.1558 38 1 2.8154 3.9881 2.8129 39 1 2.8454 6.1919 4.0435 40 1 1.7778 7.5131 3.5123 41 1 1.0897 6.0807 4.3148 42 1 -0.4539 5.7453 2.3889 43 1 0.2340 7.1648 1.5645 44 1 -1.1416 6.9114 -0.3065 45 1 -1.1527 5.3974 -1.2425 46 1 -2.4083 3.4700 -0.4729 47 1 -4.3110 2.6581 0.8627 48 1 -5.2513 4.0673 2.6497 49 1 -4.2829 6.2846 3.1070 50 1 -2.3753 7.0932 1.7766 51 1 0.0585 3.4867 -0.4208 52 1 -0.5551 3.6246 1.2442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136959140.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:42 Heat of formation + Delta-G solvation = -3.812061 kcal Electronic energy + Delta-G solvation = -28005.218903 eV Core-core repulsion = 24581.685637 eV Total energy + Delta-G solvation = -3423.533267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07761 -39.50583 -37.64928 -35.64373 -34.44954 -33.14977 -31.91754 -31.78805 -30.12163 -27.76433 -27.58328 -27.27337 -24.67249 -23.80215 -23.46221 -22.00784 -21.89354 -21.13593 -20.44688 -18.62778 -17.62628 -16.88307 -16.74222 -16.46775 -16.15093 -15.94230 -15.76457 -15.46627 -15.21948 -14.91686 -14.71268 -14.35111 -14.26816 -13.77956 -13.69427 -13.41702 -13.34930 -13.20849 -13.11809 -13.05872 -12.95082 -12.71781 -12.58750 -12.33936 -12.25463 -12.13452 -12.00027 -11.80173 -11.63107 -11.55170 -11.49084 -11.23368 -11.14340 -10.85149 -10.43798 -9.77448 -9.66548 -9.22828 -9.03580 -8.04240 -6.26071 0.44451 0.52338 1.38373 1.38668 1.46247 2.40297 2.80248 3.07324 3.16280 3.66787 3.82837 3.86488 4.00468 4.05498 4.10418 4.17273 4.29670 4.33394 4.42422 4.52353 4.61326 4.64202 4.67064 4.69067 4.75767 4.76824 4.78714 4.80660 4.88855 4.91744 4.94487 4.97965 5.13837 5.15885 5.16997 5.18615 5.21847 5.33127 5.35557 5.41213 5.50060 5.55741 5.58093 5.64232 5.64860 5.70012 5.78430 6.07232 6.14225 6.15575 6.22383 6.24405 6.44800 6.84939 7.03610 7.45110 8.92066 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.004122 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.213238 B = 6791.005924 C = 7940.292341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.229 3.771 4 H -0.004 1.004 5 C -0.558 4.558 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.098 3.902 15 H 0.014 0.986 16 C -0.106 4.106 17 C -0.086 4.086 18 H 0.062 0.938 19 C -0.135 4.135 20 C 0.065 3.935 21 N -0.540 5.540 22 C 0.094 3.906 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.114 4.114 29 C 0.094 3.906 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.330 0.670 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.128 0.872 48 H 0.141 0.859 49 H 0.145 0.855 50 H 0.137 0.863 51 H 0.039 0.961 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 13.159 10.408 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.121 3.879 4 H 0.014 0.986 5 C -0.597 4.597 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.305 5.305 14 C -0.013 4.013 15 H 0.033 0.967 16 C -0.144 4.144 17 C -0.106 4.106 18 H 0.080 0.920 19 C -0.192 4.192 20 C -0.062 4.062 21 N -0.262 5.262 22 C -0.033 4.033 23 C -0.128 4.128 24 C -0.141 4.141 25 C -0.150 4.150 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.132 4.132 29 C -0.034 4.034 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.123 0.877 47 H 0.146 0.854 48 H 0.159 0.841 49 H 0.163 0.837 50 H 0.154 0.846 51 H 0.057 0.943 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.234 13.120 9.799 21.055 hybrid contribution 1.547 -0.693 -0.372 1.736 sum -11.687 12.427 9.427 19.491 Atomic orbital electron populations 1.21537 0.96538 0.99778 1.00135 1.21355 0.94282 0.98513 0.99936 1.18844 0.91311 0.91229 0.86563 0.98617 1.22132 0.94165 1.37891 1.05529 0.93475 1.25635 1.01949 0.94816 0.95481 1.69998 1.36377 1.38800 1.09771 0.85779 0.81278 0.78121 0.77450 1.19618 1.20853 1.20229 1.60756 1.55514 1.06237 1.08009 1.21265 0.95394 0.88349 0.96244 0.96749 1.21741 1.01220 0.95637 0.95766 1.21127 0.97321 0.94134 0.97994 0.91955 1.21701 1.01973 1.00739 0.94830 1.22188 0.96105 0.99079 0.88832 1.62218 1.33150 1.06849 1.23990 1.21264 0.84015 1.01565 0.96473 1.20688 0.97985 0.95316 0.98767 1.21184 0.96777 0.96052 1.00099 1.21367 0.96661 1.00452 0.96485 1.21449 1.00551 0.94760 0.97661 1.21457 0.96403 0.96511 0.99980 1.21264 0.96571 1.00060 0.95318 1.21694 0.96176 0.86907 0.98669 0.93637 0.92509 0.95396 0.92169 0.95377 0.92961 0.85342 0.91659 0.92571 0.92447 0.91077 0.92273 0.94353 0.89192 0.87995 0.91119 0.87684 0.85370 0.84116 0.83726 0.84566 0.94287 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.85 71.98 0.71 -4.37 16 2 C -0.10 -5.02 5.45 30.59 0.17 -4.85 16 3 C 0.23 11.67 1.79 44.17 0.08 11.75 16 4 H 0.00 -0.24 7.17 -2.39 -0.02 -0.26 16 5 C -0.56 -30.89 8.22 25.60 0.21 -30.68 16 6 H 0.05 2.59 7.75 -2.91 -0.02 2.56 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -53.00 11.29 21.45 0.24 -52.76 16 9 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 N -0.68 -28.77 5.43 -473.07 -2.57 -31.34 16 14 C 0.10 3.81 2.46 44.97 0.11 3.92 16 15 H 0.01 0.68 7.60 -2.39 -0.02 0.66 16 16 C -0.11 -3.26 4.55 30.68 0.14 -3.12 16 17 C -0.09 -2.20 2.88 -10.74 -0.03 -2.23 16 18 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 19 C -0.13 -2.55 9.20 71.98 0.66 -1.89 16 20 C 0.07 1.57 4.11 86.32 0.35 1.93 16 21 N -0.54 -15.91 4.86 -900.90 -4.38 -20.29 16 22 C 0.09 2.35 5.56 85.56 0.48 2.83 16 23 C -0.13 -3.04 4.03 -19.87 -0.08 -3.12 16 24 C -0.12 -3.23 8.03 22.27 0.18 -3.05 16 25 C -0.13 -3.04 10.05 22.27 0.22 -2.81 16 26 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 27 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 28 C -0.11 -2.26 8.12 22.27 0.18 -2.08 16 29 C 0.09 3.35 4.04 86.33 0.35 3.70 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 2.26 7.63 -2.39 -0.02 2.24 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 3.33 5.95 -2.39 -0.01 3.31 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.33 13.86 8.07 -89.69 -0.72 13.14 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.04 0.93 6.55 -2.39 -0.02 0.92 16 43 H 0.09 1.77 8.06 -2.39 -0.02 1.75 16 44 H 0.10 2.05 8.01 -2.38 -0.02 2.04 16 45 H 0.07 1.91 8.08 -2.39 -0.02 1.89 16 46 H 0.11 3.04 8.03 -2.91 -0.02 3.01 16 47 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 48 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 49 H 0.14 1.79 8.06 -2.92 -0.02 1.77 16 50 H 0.14 2.14 8.03 -2.91 -0.02 2.11 16 51 H 0.04 1.61 7.45 -2.39 -0.02 1.60 16 52 H 0.04 1.32 6.48 -2.38 -0.02 1.30 16 Total: -1.00 -61.68 396.81 0.08 -61.60 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.14 Total: 33.21 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 4.63 Total: -36.68 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -6.70 Total: -104.39 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -61.68 0.08 -61.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136959140.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.784 kcal (2) G-P(sol) polarization free energy of solvation -61.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds