Wall clock time and date at job start Tue Mar 31 2020 10:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47286 * 2 1 4 4 C 1.53001 * 109.47295 * 174.99701 * 3 2 1 5 5 C 1.53001 * 115.55050 * 65.14914 * 4 3 2 6 6 N 1.46901 * 109.46871 * 39.73930 * 5 4 3 7 7 C 1.46904 * 110.99752 * 175.14864 * 6 5 4 8 8 C 1.50695 * 109.47174 * 180.02562 * 7 6 5 9 9 C 1.38288 * 119.92200 * 90.00362 * 8 7 6 10 10 C 1.38105 * 120.07288 * 179.70262 * 9 8 7 11 11 C 1.38918 * 119.92660 * 0.27439 * 10 9 8 12 12 N 1.39670 * 120.07491 * 179.97438 * 11 10 9 13 13 C 1.46502 * 120.00267 * 0.02562 * 12 11 10 14 14 C 1.46499 * 120.00139 * 180.02562 * 12 11 10 15 15 C 1.50700 * 109.47162 * 90.00149 * 14 12 11 16 16 H 1.08001 * 119.99624 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99790 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00248 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99611 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46982 * 90.00319 * 19 17 15 21 21 H 1.48503 * 109.46943 * 209.99849 * 19 17 15 22 22 H 1.48506 * 109.47328 * 330.00033 * 19 17 15 23 23 C 1.38911 * 119.84656 * 359.97438 * 11 10 9 24 24 C 1.38099 * 119.92732 * 0.02562 * 23 11 10 25 25 C 1.52998 * 117.51842 * 210.85143 * 4 3 2 26 26 C 1.52991 * 117.49728 * 279.47949 * 4 3 2 27 27 H 1.08995 * 109.47298 * 59.99681 * 1 2 3 28 28 H 1.09001 * 109.47309 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47017 * 299.99926 * 1 2 3 30 30 H 1.09000 * 109.46778 * 240.00133 * 2 1 3 31 31 H 1.08995 * 109.46896 * 119.99959 * 2 1 3 32 32 H 1.08998 * 109.47141 * 54.99451 * 3 2 1 33 33 H 1.09004 * 109.46747 * 294.99734 * 3 2 1 34 34 H 1.08999 * 109.46751 * 279.74576 * 5 4 3 35 35 H 1.08995 * 109.47243 * 159.74112 * 5 4 3 36 36 H 1.00899 * 111.00356 * 51.20160 * 6 5 4 37 37 H 1.09001 * 109.46759 * 60.00614 * 7 6 5 38 38 H 1.08991 * 109.47323 * 300.00525 * 7 6 5 39 39 H 1.07995 * 119.96356 * 359.97438 * 9 8 7 40 40 H 1.08001 * 120.03692 * 180.29840 * 10 9 8 41 41 H 1.08998 * 109.46951 * 89.99327 * 13 12 11 42 42 H 1.08996 * 109.47172 * 209.99976 * 13 12 11 43 43 H 1.09003 * 109.46907 * 329.99944 * 13 12 11 44 44 H 1.09003 * 109.47315 * 210.00777 * 14 12 11 45 45 H 1.09001 * 109.46858 * 330.00074 * 14 12 11 46 46 H 0.96995 * 119.99518 * 180.02562 * 18 17 15 47 47 H 1.08008 * 120.03276 * 180.02562 * 23 11 10 48 48 H 1.08000 * 119.96320 * 180.02562 * 24 23 11 49 49 H 1.08994 * 117.49739 * 214.97279 * 25 4 3 50 50 H 1.09001 * 117.49885 * 359.97438 * 25 4 3 51 51 H 1.09008 * 117.50113 * 359.97106 * 26 4 3 52 52 H 1.08998 * 117.49946 * 144.99601 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1258 5 6 4.3248 0.8288 -1.0509 6 7 3.6760 1.2179 -2.3101 7 6 4.4443 0.7404 -3.4676 8 6 3.7500 1.1580 -4.7382 9 6 4.0582 2.3712 -5.3260 10 6 3.4282 2.7543 -6.4938 11 6 2.4799 1.9219 -7.0749 12 7 1.8406 2.3065 -8.2556 13 6 2.1701 3.5887 -8.8830 14 6 0.8404 1.4277 -8.8668 15 6 -0.5230 1.7600 -8.3174 16 1 -0.6334 2.5474 -7.5865 17 6 -1.6294 1.0588 -8.7480 18 7 -1.4948 0.0996 -9.6377 19 14 -3.3194 1.4712 -8.0676 20 1 -3.9553 2.5097 -8.9176 21 1 -4.1634 0.2493 -8.0644 22 1 -3.1832 1.9824 -6.6799 23 6 2.1691 0.7063 -6.4790 24 6 2.8028 0.3294 -5.3113 25 6 4.2135 2.6298 0.8432 26 6 4.1585 1.2606 1.5238 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6054 1.9815 0.8417 33 1 1.7517 1.9297 -0.9314 34 1 4.3183 -0.2573 -0.9593 35 1 5.3540 1.1877 -1.0464 36 1 3.5403 2.2168 -2.3534 37 1 4.5159 -0.3467 -3.4327 38 1 5.4450 1.1715 -3.4423 39 1 4.7954 3.0179 -4.8737 40 1 3.6729 3.6998 -6.9549 41 1 2.9900 3.4484 -9.5874 42 1 1.2968 3.9690 -9.4128 43 1 2.4688 4.3026 -8.1154 44 1 0.8418 1.5717 -9.9472 45 1 1.0810 0.3894 -8.6384 46 1 -2.2732 -0.3933 -9.9408 47 1 1.4325 0.0566 -6.9284 48 1 2.5618 -0.6158 -4.8477 49 1 5.1816 2.9712 0.4769 50 1 3.5540 3.4089 1.2254 51 1 3.4628 1.1390 2.3541 52 1 5.0905 0.7013 1.6054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151551094.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:08 Heat of formation + Delta-G solvation = 26.604439 kcal Electronic energy + Delta-G solvation = -26171.112741 eV Core-core repulsion = 22748.898433 eV Total energy + Delta-G solvation = -3422.214308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.47215 -39.67862 -37.64626 -35.72978 -34.67026 -34.55962 -31.86909 -31.39230 -29.62474 -28.40082 -27.50281 -26.28139 -24.93271 -23.59545 -23.21308 -22.97856 -22.33381 -21.02432 -19.69378 -18.63642 -18.11753 -17.14510 -16.90093 -16.28464 -16.15201 -15.83304 -15.69109 -15.35292 -15.18975 -15.00720 -14.67735 -14.47009 -14.28196 -14.18928 -13.99688 -13.54859 -13.38849 -13.17335 -13.07692 -13.03294 -12.84626 -12.74284 -12.66401 -12.53238 -12.32298 -12.23519 -12.04355 -11.94127 -11.75570 -11.59526 -11.42289 -11.38821 -10.93948 -10.64213 -10.44118 -10.38459 -9.64788 -9.19235 -8.36042 -7.79127 -6.37488 0.73193 0.86044 1.36189 1.37803 1.48892 2.34375 2.64387 2.86099 3.05949 3.07964 3.53237 3.81977 4.01242 4.06385 4.09148 4.15917 4.18800 4.25229 4.41144 4.43524 4.45070 4.49623 4.60360 4.66768 4.71820 4.73628 4.78947 4.83520 4.87472 4.90499 4.92239 5.01678 5.02993 5.07628 5.09621 5.14258 5.18599 5.21443 5.22520 5.31730 5.34594 5.43730 5.58002 5.59391 5.60654 5.68026 5.70937 5.95985 6.07356 6.19066 6.27591 6.50889 6.57261 6.83103 6.95085 7.34443 8.83233 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011905 B = 0.003084 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.454835 B = 9075.844855 C =10687.348773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.067 4.067 4 C -0.127 4.127 5 C 0.102 3.898 6 N -0.686 5.686 7 C 0.122 3.878 8 C -0.156 4.156 9 C -0.061 4.061 10 C -0.217 4.217 11 C 0.213 3.787 12 N -0.633 5.633 13 C 0.098 3.902 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.960 3.040 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.273 1.273 23 C -0.218 4.218 24 C -0.055 4.055 25 C -0.177 4.177 26 C -0.166 4.166 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.342 0.658 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.009 0.991 45 H 0.010 0.990 46 H 0.267 0.733 47 H 0.092 0.908 48 H 0.119 0.881 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.097 0.903 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.680 4.034 20.056 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.104 4.104 4 C -0.127 4.127 5 C -0.026 4.026 6 N -0.317 5.317 7 C -0.006 4.006 8 C -0.159 4.159 9 C -0.080 4.080 10 C -0.240 4.240 11 C 0.108 3.892 12 N -0.341 5.341 13 C -0.045 4.045 14 C 0.145 3.855 15 C -0.580 4.580 16 H 0.067 0.933 17 C -0.187 4.187 18 N -0.567 5.567 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.241 4.241 24 C -0.074 4.074 25 C -0.214 4.214 26 C -0.203 4.203 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.076 0.924 47 H 0.111 0.889 48 H 0.137 0.863 49 H 0.114 0.886 50 H 0.112 0.888 51 H 0.116 0.884 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.062 3.424 19.743 23.919 hybrid contribution -0.681 0.428 -0.380 0.890 sum 12.381 3.852 19.362 23.303 Atomic orbital electron populations 1.21774 0.96531 1.01422 1.01278 1.21330 0.94954 0.96943 1.01524 1.20913 0.91538 0.96794 1.01186 1.21492 0.95092 1.02978 0.93186 1.21399 0.94201 0.99828 0.87221 1.60487 1.50559 1.19830 1.00824 1.20589 0.93514 1.00121 0.86425 1.19511 1.01374 0.96255 0.98780 1.20910 0.98003 0.95331 0.93740 1.20782 1.01887 1.01189 1.00152 1.18219 0.91403 0.93261 0.86339 1.46962 1.42160 1.20706 1.24249 1.21598 1.00159 0.84844 0.97866 1.18760 0.85685 0.89128 0.91914 1.21774 0.93226 1.18608 1.24350 0.93339 1.25776 1.03055 0.94640 0.95181 1.70036 1.31700 1.23114 1.31825 0.85517 0.79161 0.77983 0.78813 1.19475 1.20361 1.19733 1.20777 1.05377 0.97945 0.99952 1.20765 0.94329 0.99192 0.93127 1.23152 1.02310 0.91735 1.04158 1.23026 1.02866 0.99666 0.94781 0.94047 0.92871 0.92367 0.92633 0.92057 0.92511 0.92232 0.91219 0.94642 0.84010 0.90880 0.93613 0.84039 0.84971 0.92942 0.92570 0.90312 0.97300 0.97204 0.92380 0.88936 0.86345 0.88557 0.88762 0.88436 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.91 71.98 0.71 -2.36 16 2 C -0.11 -2.14 5.74 30.59 0.18 -1.97 16 3 C -0.07 -1.25 4.74 30.59 0.15 -1.10 16 4 C -0.13 -2.02 1.82 -52.18 -0.09 -2.11 16 5 C 0.10 1.74 5.29 86.30 0.46 2.19 16 6 N -0.69 -14.21 5.51 -517.95 -2.85 -17.07 16 7 C 0.12 2.64 5.80 85.55 0.50 3.14 16 8 C -0.16 -4.47 5.39 -19.84 -0.11 -4.57 16 9 C -0.06 -1.68 9.69 22.25 0.22 -1.46 16 10 C -0.22 -7.15 9.21 22.40 0.21 -6.95 16 11 C 0.21 8.79 6.55 38.22 0.25 9.04 16 12 N -0.63 -28.16 2.99 -726.55 -2.17 -30.34 16 13 C 0.10 3.45 10.19 127.77 1.30 4.75 16 14 C 0.27 14.28 4.91 85.63 0.42 14.70 16 15 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 16 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 19 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 C -0.22 -9.33 9.21 22.40 0.21 -9.13 16 24 C -0.05 -1.92 9.69 22.25 0.22 -1.70 16 25 C -0.18 -2.41 9.87 30.59 0.30 -2.11 16 26 C -0.17 -2.17 9.97 30.59 0.30 -1.87 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 1.26 7.87 -2.39 -0.02 1.25 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.06 1.34 7.37 -2.39 -0.02 1.32 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 0.54 7.93 -2.39 -0.02 0.52 16 36 H 0.34 7.14 8.49 -89.69 -0.76 6.38 16 37 H 0.07 1.58 8.09 -2.39 -0.02 1.57 16 38 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 39 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.13 3.75 6.14 -2.91 -0.02 3.74 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 43 H 0.08 2.33 6.20 -2.39 -0.01 2.32 16 44 H 0.01 0.50 8.07 -2.39 -0.02 0.49 16 45 H 0.01 0.58 6.20 -2.39 -0.01 0.56 16 46 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 47 H 0.09 4.60 6.14 -2.91 -0.02 4.58 16 48 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 49 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 50 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 52 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -63.11 415.83 3.30 -59.81 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.11 Total: 26.68 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 5.91 Total: -31.01 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -4.74 Total: -102.27 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.11 3.30 -59.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151551094.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.413 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds