Wall clock time and date at job start Tue Mar 31 2020 11:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.46722 * 2 1 4 4 C 1.46900 * 110.99869 * 166.22996 * 3 2 1 5 5 C 1.50704 * 109.46910 * 293.95554 * 4 3 2 6 6 C 1.38292 * 119.92262 * 269.72849 * 5 4 3 7 7 C 1.38108 * 120.07131 * 179.73025 * 6 5 4 8 8 C 1.38908 * 119.92580 * 0.53844 * 7 6 5 9 9 N 1.39670 * 120.07403 * 179.74980 * 8 7 6 10 10 C 1.46502 * 120.00039 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00198 * 359.97438 * 9 8 7 12 12 C 1.50703 * 109.47219 * 89.99217 * 11 9 8 13 13 H 1.08000 * 120.00035 * 0.02562 * 12 11 9 14 14 C 1.37876 * 120.00055 * 179.97438 * 12 11 9 15 15 N 1.31507 * 120.00203 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99847 * 0.02562 * 14 12 11 17 17 H 1.48490 * 109.47130 * 89.99873 * 16 14 12 18 18 H 1.48505 * 109.46901 * 209.99974 * 16 14 12 19 19 H 1.48500 * 109.47008 * 329.99671 * 16 14 12 20 20 C 1.38914 * 119.85027 * 359.73376 * 8 7 6 21 21 C 1.38098 * 119.92525 * 359.97438 * 20 8 7 22 22 C 1.46899 * 111.00100 * 290.17896 * 3 2 1 23 23 C 1.54266 * 110.03488 * 292.29258 * 22 3 2 24 24 C 1.54963 * 104.15986 * 217.13390 * 23 22 3 25 25 C 1.54886 * 102.77613 * 37.88846 * 24 23 22 26 26 C 1.53871 * 110.03321 * 175.07278 * 22 3 2 27 27 H 1.09004 * 109.46529 * 185.72702 * 1 2 3 28 28 H 1.09000 * 109.47152 * 305.71863 * 1 2 3 29 29 H 1.08995 * 109.47436 * 65.72493 * 1 2 3 30 30 H 1.08996 * 109.47238 * 120.00176 * 2 1 3 31 31 H 1.08999 * 109.47093 * 240.00553 * 2 1 3 32 32 H 1.08999 * 109.47263 * 53.94681 * 4 3 2 33 33 H 1.08993 * 109.47236 * 173.95484 * 4 3 2 34 34 H 1.07994 * 119.95941 * 359.97146 * 6 5 4 35 35 H 1.07995 * 120.03404 * 180.27262 * 7 6 5 36 36 H 1.08998 * 109.46956 * 90.00073 * 10 9 8 37 37 H 1.09002 * 109.46984 * 210.00496 * 10 9 8 38 38 H 1.08999 * 109.47328 * 330.00359 * 10 9 8 39 39 H 1.08991 * 109.47410 * 209.99626 * 11 9 8 40 40 H 1.08996 * 109.46920 * 329.99926 * 11 9 8 41 41 H 0.97001 * 120.00022 * 180.02562 * 15 14 12 42 42 H 1.08003 * 120.03552 * 179.97438 * 20 8 7 43 43 H 1.08002 * 119.96355 * 179.97438 * 21 20 8 44 44 H 1.08999 * 110.01173 * 53.68432 * 22 3 2 45 45 H 1.08993 * 110.48595 * 335.78520 * 23 22 3 46 46 H 1.09001 * 110.48491 * 98.42849 * 23 22 3 47 47 H 1.08999 * 110.71887 * 279.57603 * 24 23 22 48 48 H 1.09005 * 110.92067 * 156.29421 * 24 23 22 49 49 H 1.09006 * 110.48798 * 203.40376 * 25 24 23 50 50 H 1.09003 * 110.60429 * 80.81761 * 25 24 23 51 51 H 1.08995 * 110.03468 * 238.57432 * 26 22 3 52 52 H 1.09000 * 110.03220 * 359.95205 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4509 1.4375 0.3264 5 6 3.6587 0.9837 1.7484 6 6 3.6316 1.9065 2.7780 7 6 3.8162 1.4932 4.0828 8 6 4.0403 0.1506 4.3593 9 7 4.2325 -0.2700 5.6773 10 6 4.4683 -1.6866 5.9671 11 6 4.1984 0.7053 6.7698 12 6 2.7875 0.8355 7.2832 13 1 1.9955 0.2499 6.8402 14 6 2.5079 1.7014 8.3191 15 7 1.2768 1.8146 8.7674 16 14 3.8780 2.7137 9.0858 17 1 3.9995 4.0072 8.3667 18 1 3.5645 2.9692 10.5147 19 1 5.1590 1.9693 8.9855 20 6 4.0726 -0.7730 3.3221 21 6 3.8813 -0.3538 2.0203 22 6 1.7490 2.0391 -1.2872 23 6 2.6033 1.3937 -2.3979 24 6 2.9999 2.5820 -3.3099 25 6 3.2475 3.7252 -2.2947 26 6 2.1580 3.5210 -1.2218 27 1 -0.3632 -1.0226 0.1026 28 1 -0.3633 0.6000 0.8344 29 1 -0.3634 0.4225 -0.9367 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 4.0017 0.7820 -0.3482 33 1 3.8118 2.4598 0.2149 34 1 3.4621 2.9509 2.5618 35 1 3.7905 2.2138 4.8868 36 1 5.5387 -1.8900 5.9386 37 1 4.0794 -1.9245 6.9572 38 1 3.9621 -2.2993 5.2211 39 1 4.8493 0.3696 7.5771 40 1 4.5426 1.6727 6.4041 41 1 1.0801 2.4241 9.4960 42 1 4.2470 -1.8176 3.5337 43 1 3.9066 -1.0712 1.2134 44 1 0.6906 1.9544 -1.5335 45 1 3.4914 0.9261 -1.9729 46 1 2.0162 0.6636 -2.9550 47 1 2.1850 2.8368 -3.9875 48 1 3.9088 2.3576 -3.8683 49 1 3.1307 4.6958 -2.7771 50 1 4.2398 3.6371 -1.8523 51 1 1.2984 4.1555 -1.4371 52 1 2.5565 3.7551 -0.2346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153675207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:39 Heat of formation + Delta-G solvation = 33.046516 kcal Electronic energy + Delta-G solvation = -27047.150393 eV Core-core repulsion = 23625.215434 eV Total energy + Delta-G solvation = -3421.934959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.90572 -38.73620 -36.17948 -34.94306 -32.64247 -31.28939 -30.53385 -29.72534 -28.85847 -28.32135 -27.25448 -25.42708 -24.05439 -22.35144 -22.12116 -21.32302 -20.70826 -19.70487 -18.85445 -16.92995 -16.81157 -16.30877 -16.02776 -15.32239 -14.97930 -14.59266 -14.31679 -14.24205 -14.00319 -13.63616 -13.53019 -13.28109 -13.11834 -12.95613 -12.67394 -12.39668 -12.18510 -11.79661 -11.63692 -11.61075 -11.47224 -11.44428 -11.29166 -11.27717 -11.16548 -11.00167 -10.91307 -10.68643 -10.64211 -10.57379 -10.35838 -10.22725 -10.03149 -9.56936 -8.87082 -8.64502 -8.28256 -8.11128 -6.38975 -6.13050 -4.13017 2.08020 2.19572 3.22674 3.30324 3.31066 3.95254 4.07641 4.33430 4.43744 4.51376 4.58664 4.77063 5.07867 5.16491 5.17761 5.22460 5.29127 5.32394 5.37918 5.41763 5.48411 5.52681 5.56020 5.59133 5.65208 5.65544 5.74638 5.77586 5.83322 5.86797 5.90680 5.97335 6.03099 6.08942 6.14006 6.18537 6.19459 6.23872 6.31022 6.37565 6.39335 6.55949 6.76422 6.76581 6.99534 7.07357 7.17947 7.28828 7.33456 7.53840 7.56168 8.06125 8.35787 8.52860 8.94793 9.46786 11.00031 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.003030 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.681397 B = 9239.960252 C = 9650.686602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.523 5.523 4 C 0.106 3.894 5 C -0.161 4.161 6 C -0.052 4.052 7 C -0.187 4.187 8 C 0.240 3.760 9 N -0.612 5.612 10 C 0.099 3.901 11 C 0.221 3.779 12 C -0.534 4.534 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.872 3.128 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.218 4.218 21 C -0.070 4.070 22 C 0.080 3.920 23 C -0.161 4.161 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.121 4.121 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -1.324 -21.627 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.246 5.246 4 C -0.021 4.021 5 C -0.164 4.164 6 C -0.071 4.071 7 C -0.210 4.210 8 C 0.134 3.866 9 N -0.318 5.318 10 C -0.045 4.045 11 C 0.100 3.900 12 C -0.573 4.573 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.699 3.301 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.241 4.241 21 C -0.089 4.089 22 C -0.029 4.029 23 C -0.200 4.200 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.159 4.159 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.270 -1.046 -20.861 21.319 hybrid contribution 0.830 0.051 -0.007 0.831 sum 5.100 -0.995 -20.868 21.505 Atomic orbital electron populations 1.21760 0.95302 1.01383 1.01921 1.22157 0.95831 0.89255 1.01069 1.62319 1.16413 1.16755 1.29103 1.20886 0.87769 1.00670 0.92753 1.19186 1.09474 0.93523 0.94214 1.20614 0.96366 0.98466 0.91659 1.20823 1.08325 0.94804 0.97005 1.17897 0.91354 0.92849 0.84496 1.46699 1.74558 1.06979 1.03545 1.21482 0.98910 0.82419 1.01676 1.19648 0.97750 0.87870 0.84769 1.21481 0.93223 1.25053 1.17502 0.90566 1.24898 0.95339 0.96455 0.96324 1.69901 1.18691 1.37364 1.27318 0.86917 0.82867 0.81280 0.79067 1.19879 1.20983 1.19041 1.20509 1.12917 0.98438 0.92190 1.20511 0.98401 0.94671 0.95311 1.22409 0.99392 0.93791 0.87323 1.23101 1.00775 0.98216 0.97949 1.22421 1.00842 0.95272 0.97328 1.22389 0.99153 0.98328 0.96525 1.22242 0.98512 0.95302 0.99860 0.92693 0.91570 0.93428 0.89685 0.95371 0.94794 0.90422 0.87060 0.85479 0.94604 0.91305 0.92442 0.95502 0.95503 0.92520 0.86896 0.87700 0.89880 0.90979 0.92031 0.91697 0.91972 0.91841 0.91713 0.91666 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.81 37.16 0.36 -1.28 16 2 C 0.04 0.53 5.40 -3.82 -0.02 0.51 16 3 N -0.52 -6.41 4.42 -226.74 -1.00 -7.41 16 4 C 0.11 1.32 4.26 -4.97 -0.02 1.30 16 5 C -0.16 -2.46 4.93 -104.58 -0.52 -2.97 16 6 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 7 C -0.19 -3.73 9.21 -39.38 -0.36 -4.09 16 8 C 0.24 4.78 6.55 -83.79 -0.55 4.23 16 9 N -0.61 -12.81 2.99 -181.00 -0.54 -13.35 16 10 C 0.10 1.70 10.19 59.85 0.61 2.31 16 11 C 0.22 5.21 3.98 -5.19 -0.02 5.19 16 12 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 16 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 20 C -0.22 -3.72 9.21 -39.38 -0.36 -4.08 16 21 C -0.07 -1.06 7.83 -39.62 -0.31 -1.37 16 22 C 0.08 0.81 2.86 -66.60 -0.19 0.62 16 23 C -0.16 -1.46 5.10 -25.03 -0.13 -1.58 16 24 C -0.12 -0.95 6.91 -24.70 -0.17 -1.12 16 25 C -0.13 -1.04 6.81 -25.07 -0.17 -1.22 16 26 C -0.12 -1.17 5.82 -25.62 -0.15 -1.32 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.48 6.82 -51.93 -0.35 0.12 16 30 H 0.08 1.16 5.24 -51.93 -0.27 0.89 16 31 H 0.03 0.31 7.12 -51.93 -0.37 -0.06 16 32 H 0.03 0.40 6.19 -51.93 -0.32 0.08 16 33 H 0.08 0.93 6.09 -51.93 -0.32 0.62 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.13 2.73 6.14 -52.49 -0.32 2.41 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 39 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 40 H 0.03 0.63 5.63 -51.93 -0.29 0.34 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.11 1.74 6.14 -52.48 -0.32 1.42 16 43 H 0.10 1.36 7.78 -52.49 -0.41 0.95 16 44 H 0.08 0.86 6.54 -51.93 -0.34 0.52 16 45 H 0.07 0.71 5.63 -51.93 -0.29 0.41 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.08 0.86 6.53 -51.93 -0.34 0.52 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -29.75 388.49 -11.28 -41.03 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.88 Total: 3.51 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.82 Total: -19.41 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.77 Total: -47.09 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.75 -11.28 -41.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153675207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.080 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds