Wall clock time and date at job start Tue Mar 31 2020 11:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.46722 * 2 1 4 4 C 1.46900 * 110.99869 * 166.22996 * 3 2 1 5 5 C 1.50704 * 109.46910 * 293.95554 * 4 3 2 6 6 C 1.38292 * 119.92262 * 269.72849 * 5 4 3 7 7 C 1.38108 * 120.07131 * 179.73025 * 6 5 4 8 8 C 1.38908 * 119.92580 * 0.53844 * 7 6 5 9 9 N 1.39670 * 120.07403 * 179.74980 * 8 7 6 10 10 C 1.46502 * 120.00039 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00198 * 359.97438 * 9 8 7 12 12 C 1.50703 * 109.47219 * 89.99217 * 11 9 8 13 13 H 1.08000 * 120.00035 * 0.02562 * 12 11 9 14 14 C 1.37876 * 120.00055 * 179.97438 * 12 11 9 15 15 N 1.31507 * 120.00203 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99847 * 0.02562 * 14 12 11 17 17 H 1.48490 * 109.47130 * 89.99873 * 16 14 12 18 18 H 1.48505 * 109.46901 * 209.99974 * 16 14 12 19 19 H 1.48500 * 109.47008 * 329.99671 * 16 14 12 20 20 C 1.38914 * 119.85027 * 359.73376 * 8 7 6 21 21 C 1.38098 * 119.92525 * 359.97438 * 20 8 7 22 22 C 1.46899 * 111.00100 * 290.17896 * 3 2 1 23 23 C 1.54266 * 110.03488 * 292.29258 * 22 3 2 24 24 C 1.54963 * 104.15986 * 217.13390 * 23 22 3 25 25 C 1.54886 * 102.77613 * 37.88846 * 24 23 22 26 26 C 1.53871 * 110.03321 * 175.07278 * 22 3 2 27 27 H 1.09004 * 109.46529 * 185.72702 * 1 2 3 28 28 H 1.09000 * 109.47152 * 305.71863 * 1 2 3 29 29 H 1.08995 * 109.47436 * 65.72493 * 1 2 3 30 30 H 1.08996 * 109.47238 * 120.00176 * 2 1 3 31 31 H 1.08999 * 109.47093 * 240.00553 * 2 1 3 32 32 H 1.08999 * 109.47263 * 53.94681 * 4 3 2 33 33 H 1.08993 * 109.47236 * 173.95484 * 4 3 2 34 34 H 1.07994 * 119.95941 * 359.97146 * 6 5 4 35 35 H 1.07995 * 120.03404 * 180.27262 * 7 6 5 36 36 H 1.08998 * 109.46956 * 90.00073 * 10 9 8 37 37 H 1.09002 * 109.46984 * 210.00496 * 10 9 8 38 38 H 1.08999 * 109.47328 * 330.00359 * 10 9 8 39 39 H 1.08991 * 109.47410 * 209.99626 * 11 9 8 40 40 H 1.08996 * 109.46920 * 329.99926 * 11 9 8 41 41 H 0.97001 * 120.00022 * 180.02562 * 15 14 12 42 42 H 1.08003 * 120.03552 * 179.97438 * 20 8 7 43 43 H 1.08002 * 119.96355 * 179.97438 * 21 20 8 44 44 H 1.08999 * 110.01173 * 53.68432 * 22 3 2 45 45 H 1.08993 * 110.48595 * 335.78520 * 23 22 3 46 46 H 1.09001 * 110.48491 * 98.42849 * 23 22 3 47 47 H 1.08999 * 110.71887 * 279.57603 * 24 23 22 48 48 H 1.09005 * 110.92067 * 156.29421 * 24 23 22 49 49 H 1.09006 * 110.48798 * 203.40376 * 25 24 23 50 50 H 1.09003 * 110.60429 * 80.81761 * 25 24 23 51 51 H 1.08995 * 110.03468 * 238.57432 * 26 22 3 52 52 H 1.09000 * 110.03220 * 359.95205 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4509 1.4375 0.3264 5 6 3.6587 0.9837 1.7484 6 6 3.6316 1.9065 2.7780 7 6 3.8162 1.4932 4.0828 8 6 4.0403 0.1506 4.3593 9 7 4.2325 -0.2700 5.6773 10 6 4.4683 -1.6866 5.9671 11 6 4.1984 0.7053 6.7698 12 6 2.7875 0.8355 7.2832 13 1 1.9955 0.2499 6.8402 14 6 2.5079 1.7014 8.3191 15 7 1.2768 1.8146 8.7674 16 14 3.8780 2.7137 9.0858 17 1 3.9995 4.0072 8.3667 18 1 3.5645 2.9692 10.5147 19 1 5.1590 1.9693 8.9855 20 6 4.0726 -0.7730 3.3221 21 6 3.8813 -0.3538 2.0203 22 6 1.7490 2.0391 -1.2872 23 6 2.6033 1.3937 -2.3979 24 6 2.9999 2.5820 -3.3099 25 6 3.2475 3.7252 -2.2947 26 6 2.1580 3.5210 -1.2218 27 1 -0.3632 -1.0226 0.1026 28 1 -0.3633 0.6000 0.8344 29 1 -0.3634 0.4225 -0.9367 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 4.0017 0.7820 -0.3482 33 1 3.8118 2.4598 0.2149 34 1 3.4621 2.9509 2.5618 35 1 3.7905 2.2138 4.8868 36 1 5.5387 -1.8900 5.9386 37 1 4.0794 -1.9245 6.9572 38 1 3.9621 -2.2993 5.2211 39 1 4.8493 0.3696 7.5771 40 1 4.5426 1.6727 6.4041 41 1 1.0801 2.4241 9.4960 42 1 4.2470 -1.8176 3.5337 43 1 3.9066 -1.0712 1.2134 44 1 0.6906 1.9544 -1.5335 45 1 3.4914 0.9261 -1.9729 46 1 2.0162 0.6636 -2.9550 47 1 2.1850 2.8368 -3.9875 48 1 3.9088 2.3576 -3.8683 49 1 3.1307 4.6958 -2.7771 50 1 4.2398 3.6371 -1.8523 51 1 1.2984 4.1555 -1.4371 52 1 2.5565 3.7551 -0.2346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153675207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:38 Heat of formation + Delta-G solvation = 17.574066 kcal Electronic energy + Delta-G solvation = -27047.821328 eV Core-core repulsion = 23625.215434 eV Total energy + Delta-G solvation = -3422.605895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93689 -39.95472 -37.49060 -35.98914 -34.70910 -32.47061 -31.94777 -30.88258 -30.01326 -29.56046 -28.27625 -26.72212 -25.47636 -23.66246 -23.39654 -22.59678 -21.43908 -21.09244 -19.76056 -19.08043 -18.15592 -17.33714 -16.90799 -16.82889 -16.18545 -15.91520 -15.50702 -15.49522 -15.23839 -14.81095 -14.67040 -14.58125 -14.38555 -14.27720 -14.17263 -13.63689 -13.36924 -13.28483 -13.10535 -12.89625 -12.65787 -12.43592 -12.41861 -12.35587 -12.13991 -12.12068 -12.00333 -11.90474 -11.83854 -11.73724 -11.61129 -11.44842 -11.34142 -11.20639 -10.82499 -10.37494 -9.65100 -9.02783 -8.33495 -7.89580 -6.38832 0.70115 0.83585 1.33955 1.34955 1.45494 2.30354 2.54508 2.92225 3.00470 3.33781 3.74911 3.81766 3.98243 4.05223 4.13165 4.20878 4.27446 4.34640 4.41145 4.48582 4.56160 4.59059 4.61844 4.67513 4.69974 4.72408 4.75933 4.78309 4.80047 4.81787 4.87769 4.90610 4.97046 5.00377 5.05710 5.09956 5.12078 5.20325 5.25537 5.28987 5.34061 5.40646 5.45311 5.45958 5.50437 5.60549 5.65576 5.93598 6.09265 6.20975 6.29953 6.39494 6.60037 6.70075 6.87851 7.26672 8.84090 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.003030 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.681397 B = 9239.960252 C = 9650.686602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.539 5.539 4 C 0.112 3.888 5 C -0.150 4.150 6 C -0.058 4.058 7 C -0.216 4.216 8 C 0.211 3.789 9 N -0.629 5.629 10 C 0.097 3.903 11 C 0.232 3.768 12 C -0.536 4.536 13 H 0.023 0.977 14 C 0.011 3.989 15 N -0.946 5.946 16 Si 0.947 3.053 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.243 1.243 20 C -0.215 4.215 21 C -0.063 4.063 22 C 0.080 3.920 23 C -0.156 4.156 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.122 4.122 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.268 0.732 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.068 0.932 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.479 -1.630 -24.236 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.263 5.263 4 C -0.014 4.014 5 C -0.153 4.153 6 C -0.077 4.077 7 C -0.239 4.239 8 C 0.107 3.893 9 N -0.337 5.337 10 C -0.045 4.045 11 C 0.110 3.890 12 C -0.575 4.575 13 H 0.042 0.958 14 C -0.186 4.186 15 N -0.586 5.586 16 Si 0.769 3.231 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.166 1.166 20 C -0.237 4.237 21 C -0.082 4.082 22 C -0.029 4.029 23 C -0.195 4.195 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.160 4.160 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.143 -1.375 -23.516 24.344 hybrid contribution 0.119 0.109 0.642 0.662 sum 6.262 -1.265 -22.874 23.749 Atomic orbital electron populations 1.21725 0.95056 1.01640 1.01601 1.22130 0.96050 0.89129 1.00901 1.62257 1.16078 1.17159 1.30793 1.20822 0.88381 1.01248 0.90965 1.19529 1.07141 0.93329 0.95276 1.20775 0.96253 0.99545 0.91154 1.20791 1.10721 0.94834 0.97521 1.18173 0.92923 0.93402 0.84796 1.46683 1.75944 1.07788 1.03315 1.21626 1.00687 0.80788 1.01438 1.19323 0.94746 0.89071 0.85903 1.21666 0.94346 1.24136 1.17322 0.95833 1.25878 0.98130 0.97779 0.96861 1.70067 1.21413 1.38780 1.28389 0.85729 0.79976 0.79532 0.77848 1.19064 1.20518 1.16594 1.20771 1.11954 0.98878 0.92145 1.20869 0.96661 0.95233 0.95431 1.22444 0.99675 0.93963 0.86779 1.23040 1.00259 0.98632 0.97594 1.22413 1.01530 0.94380 0.97104 1.22371 0.98398 0.99132 0.96193 1.22241 0.99124 0.95094 0.99550 0.91752 0.93920 0.92106 0.91427 0.93725 0.93231 0.89953 0.86150 0.88269 0.91985 0.92632 0.90859 0.94639 0.95361 0.92322 0.85005 0.84528 0.89955 0.91440 0.91425 0.90971 0.91086 0.90919 0.91924 0.91372 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.81 71.98 0.71 -2.32 16 2 C 0.05 1.00 5.40 86.30 0.47 1.46 16 3 N -0.54 -12.29 4.42 -871.29 -3.85 -16.14 16 4 C 0.11 2.57 4.26 85.56 0.36 2.93 16 5 C -0.15 -4.37 4.93 -19.84 -0.10 -4.47 16 6 C -0.06 -2.00 9.69 22.25 0.22 -1.79 16 7 C -0.22 -8.92 9.21 22.40 0.21 -8.71 16 8 C 0.21 8.50 6.55 38.21 0.25 8.75 16 9 N -0.63 -26.71 2.99 -726.57 -2.17 -28.88 16 10 C 0.10 3.29 10.19 127.77 1.30 4.59 16 11 C 0.23 11.17 3.98 85.63 0.34 11.51 16 12 C -0.54 -31.31 9.94 25.60 0.25 -31.06 16 13 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 14 C 0.01 0.67 5.47 84.66 0.46 1.13 16 15 N -0.95 -59.73 13.96 21.45 0.30 -59.44 16 16 Si 0.95 43.47 27.47 68.60 1.88 45.36 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 20 C -0.21 -7.06 9.21 22.40 0.21 -6.85 16 21 C -0.06 -1.78 7.83 22.25 0.17 -1.60 16 22 C 0.08 1.46 2.86 45.64 0.13 1.59 16 23 C -0.16 -2.35 5.10 31.69 0.16 -2.19 16 24 C -0.12 -1.48 6.91 31.91 0.22 -1.26 16 25 C -0.12 -1.75 6.81 31.67 0.22 -1.53 16 26 C -0.12 -2.16 5.82 31.32 0.18 -1.97 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.11 6.82 -2.39 -0.02 1.09 16 30 H 0.07 1.71 5.24 -2.39 -0.01 1.70 16 31 H 0.04 0.84 7.12 -2.39 -0.02 0.82 16 32 H 0.05 1.00 6.19 -2.39 -0.01 0.99 16 33 H 0.08 1.83 6.09 -2.39 -0.01 1.81 16 34 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.10 4.55 6.14 -2.91 -0.02 4.53 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 38 H 0.07 2.19 6.20 -2.39 -0.01 2.17 16 39 H 0.04 1.64 7.13 -2.39 -0.02 1.62 16 40 H 0.03 1.36 5.63 -2.39 -0.01 1.34 16 41 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.13 3.76 6.14 -2.91 -0.02 3.74 16 43 H 0.14 3.02 7.78 -2.91 -0.02 3.00 16 44 H 0.08 1.53 6.54 -2.39 -0.02 1.51 16 45 H 0.07 1.09 5.63 -2.39 -0.01 1.08 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 49 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.06 1.31 6.53 -2.39 -0.02 1.30 16 Total: -1.00 -67.71 388.49 2.75 -64.96 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.83 Total: 25.90 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 5.76 Total: -31.76 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -5.72 Total: -104.46 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.36 kcal Total: -67.71 2.75 -64.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153675207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.535 kcal (2) G-P(sol) polarization free energy of solvation -67.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds