Wall clock time and date at job start Tue Mar 31 2020 11:11:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53002 * 109.46976 * 2 1
4 4 H 1.09004 * 110.05180 * 55.24792 * 3 2 1
5 5 C 1.54268 * 110.03377 * 293.83193 * 3 2 1
6 6 C 1.54892 * 104.19400 * 217.10768 * 5 3 2
7 7 C 1.54892 * 102.74869 * 37.94192 * 6 5 3
8 8 C 1.53872 * 110.02868 * 176.66356 * 3 2 1
9 9 H 1.09004 * 110.03224 * 238.61762 * 8 3 2
10 10 N 1.46898 * 110.03638 * 359.97438 * 8 3 2
11 11 C 1.46895 * 111.00313 * 192.10577 * 10 8 3
12 12 C 1.50696 * 109.47436 * 180.02562 * 11 10 8
13 13 C 1.38285 * 119.92962 * 89.99306 * 12 11 10
14 14 C 1.38105 * 120.07581 * 180.02562 * 13 12 11
15 15 C 1.38906 * 119.92474 * 0.27821 * 14 13 12
16 16 N 1.39675 * 120.07827 * 179.72665 * 15 14 13
17 17 C 1.46497 * 119.99660 * 0.02562 * 16 15 14
18 18 C 1.46496 * 120.00287 * 179.97438 * 16 15 14
19 19 C 1.50699 * 109.47093 * 90.00052 * 18 16 15
20 20 H 1.07996 * 119.99755 * 0.02562 * 19 18 16
21 21 C 1.37875 * 119.99981 * 179.97438 * 19 18 16
22 22 N 1.31514 * 120.00158 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00240 * 179.97438 * 21 19 18
24 24 H 1.48504 * 109.47029 * 59.99925 * 23 21 19
25 25 H 1.48497 * 109.47543 * 180.02562 * 23 21 19
26 26 H 1.48508 * 109.47018 * 300.00521 * 23 21 19
27 27 C 1.38915 * 119.85076 * 359.44361 * 15 14 13
28 28 C 1.38105 * 119.92154 * 0.57884 * 27 15 14
29 29 H 1.09002 * 109.46890 * 299.99913 * 1 2 3
30 30 H 1.09004 * 109.46825 * 59.99813 * 1 2 3
31 31 H 1.08997 * 109.47193 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.46890 * 240.00087 * 2 1 3
33 33 H 1.08996 * 109.46918 * 119.99894 * 2 1 3
34 34 H 1.09005 * 110.48314 * 335.78481 * 5 3 2
35 35 H 1.09000 * 110.48699 * 98.29256 * 5 3 2
36 36 H 1.08999 * 110.75549 * 156.25314 * 6 5 3
37 37 H 1.08994 * 110.75537 * 279.62760 * 6 5 3
38 38 H 1.09004 * 110.48118 * 203.38207 * 7 6 5
39 39 H 1.08993 * 110.48613 * 80.73401 * 7 6 5
40 40 H 1.00899 * 110.99745 * 316.06019 * 10 8 3
41 41 H 1.08997 * 109.47207 * 59.99764 * 11 10 8
42 42 H 1.09005 * 109.47011 * 299.99952 * 11 10 8
43 43 H 1.07993 * 119.96237 * 359.97438 * 13 12 11
44 44 H 1.07997 * 120.03816 * 180.02562 * 14 13 12
45 45 H 1.08996 * 109.47908 * 90.00031 * 17 16 15
46 46 H 1.09005 * 109.47408 * 210.00168 * 17 16 15
47 47 H 1.09007 * 109.46854 * 329.99511 * 17 16 15
48 48 H 1.09008 * 109.47198 * 210.00048 * 18 16 15
49 49 H 1.09004 * 109.47532 * 329.99749 * 18 16 15
50 50 H 0.97005 * 120.00321 * 179.97438 * 22 21 19
51 51 H 1.08001 * 120.03964 * 180.25225 * 27 15 14
52 52 H 1.08004 * 119.95673 * 179.69430 * 28 27 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6143 1.9894 0.8413
5 6 1.6641 2.1360 -1.3258
6 6 2.8841 3.0360 -1.6429
7 6 4.0805 2.1609 -1.1934
8 6 3.5764 1.4584 0.0841
9 1 3.8963 2.0123 0.9667
10 7 4.0916 0.0838 0.1398
11 6 5.5140 0.0691 0.5063
12 6 6.0062 -1.3545 0.5526
13 6 6.5306 -1.9405 -0.5848
14 6 6.9821 -3.2451 -0.5459
15 6 6.9036 -3.9706 0.6360
16 7 7.3540 -5.2921 0.6774
17 6 7.9105 -5.9143 -0.5264
18 6 7.2709 -6.0555 1.9250
19 6 5.9459 -6.7706 1.9890
20 1 5.2369 -6.6671 1.1810
21 6 5.6393 -7.5578 3.0786
22 7 6.5030 -7.6843 4.0623
23 14 3.9967 -8.4437 3.1584
24 1 3.8762 -9.3682 2.0025
25 1 3.9124 -9.2176 4.4229
26 1 2.8950 -7.4487 3.1132
27 6 6.3815 -3.3770 1.7783
28 6 5.9314 -2.0722 1.7323
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 1.5192 1.3978 -2.1146
35 1 0.7650 2.7392 -1.1992
36 1 2.9404 3.2482 -2.7106
37 1 2.8430 3.9598 -1.0660
38 1 4.9462 2.7843 -0.9697
39 1 4.3258 1.4268 -1.9609
40 1 3.5484 -0.4804 0.7759
41 1 5.6416 0.5301 1.4858
42 1 6.0860 0.6270 -0.2351
43 1 6.5865 -1.3776 -1.5048
44 1 7.3920 -3.7020 -1.4345
45 1 8.9860 -5.7409 -0.5611
46 1 7.7159 -6.9866 -0.5044
47 1 7.4434 -5.4785 -1.4097
48 1 8.0797 -6.7855 1.9588
49 1 7.3587 -5.3765 2.7731
50 1 6.2872 -8.2379 4.8291
51 1 6.3228 -3.9370 2.6999
52 1 5.5209 -1.6117 2.6188
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000154134101.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:16
Heat of formation + Delta-G solvation = 15.897089 kcal
Electronic energy + Delta-G solvation = -26424.148625 eV
Core-core repulsion = 23001.470011 eV
Total energy + Delta-G solvation = -3422.678614 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-39.50143 -38.80223 -36.08121 -34.13573 -33.23176 -32.65662 -30.41655 -30.00950
-27.80246 -27.71965 -27.12650 -25.21764 -23.78238 -22.98614 -22.09966 -21.43958
-20.70677 -19.52957 -18.96230 -16.72111 -16.48100 -16.14243 -15.81568 -15.29150
-14.99708 -14.61237 -14.46028 -14.16929 -14.06936 -13.70152 -13.47405 -13.32973
-13.02129 -12.84417 -12.56041 -12.35080 -12.16961 -11.94244 -11.61561 -11.50631
-11.39389 -11.34220 -11.23329 -11.16153 -11.00039 -10.90161 -10.75801 -10.67180
-10.62691 -10.48897 -10.41876 -10.26175 -9.88011 -9.74565 -8.82968 -8.50376
-8.30313 -8.22174 -6.45080 -6.01134 -4.17436 2.13671 2.25720 3.27999
3.32282 3.35804 4.14825 4.23429 4.40440 4.41520 4.46046 4.62820
4.81270 5.07301 5.12140 5.20825 5.21456 5.27216 5.33757 5.38938
5.44002 5.48914 5.51829 5.59426 5.64436 5.67416 5.74129 5.77623
5.83676 5.88134 5.92359 5.94903 6.02449 6.03779 6.06095 6.09521
6.18246 6.24389 6.30177 6.37397 6.42222 6.45804 6.67293 6.95633
7.04574 7.17991 7.23960 7.28209 7.35456 7.52963 7.63107 7.81072
8.15881 8.28087 8.50505 8.91602 9.49370 10.95631
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.013692 B = 0.002958 C = 0.002593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2044.450683 B = 9463.412979 C =10796.123385
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.113 4.113
3 C -0.089 4.089
4 H 0.067 0.933
5 C -0.114 4.114
6 C -0.125 4.125
7 C -0.114 4.114
8 C 0.084 3.916
9 H 0.037 0.963
10 N -0.679 5.679
11 C 0.114 3.886
12 C -0.171 4.171
13 C -0.051 4.051
14 C -0.223 4.223
15 C 0.242 3.758
16 N -0.616 5.616
17 C 0.098 3.902
18 C 0.249 3.751
19 C -0.531 4.531
20 H 0.059 0.941
21 C 0.062 3.938
22 N -0.896 5.896
23 Si 0.896 3.104
24 H -0.277 1.277
25 H -0.286 1.286
26 H -0.275 1.275
27 C -0.188 4.188
28 C -0.068 4.068
29 H 0.048 0.952
30 H 0.052 0.948
31 H 0.053 0.947
32 H 0.077 0.923
33 H 0.061 0.939
34 H 0.069 0.931
35 H 0.060 0.940
36 H 0.064 0.936
37 H 0.062 0.938
38 H 0.057 0.943
39 H 0.078 0.922
40 H 0.345 0.655
41 H 0.026 0.974
42 H 0.069 0.931
43 H 0.108 0.892
44 H 0.113 0.887
45 H 0.035 0.965
46 H 0.066 0.934
47 H 0.055 0.945
48 H 0.030 0.970
49 H 0.035 0.965
50 H 0.264 0.736
51 H 0.130 0.870
52 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.610 18.949 -9.416 21.890
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.151 4.151
3 C -0.108 4.108
4 H 0.085 0.915
5 C -0.151 4.151
6 C -0.163 4.163
7 C -0.152 4.152
8 C -0.026 4.026
9 H 0.055 0.945
10 N -0.313 5.313
11 C -0.014 4.014
12 C -0.174 4.174
13 C -0.070 4.070
14 C -0.246 4.246
15 C 0.134 3.866
16 N -0.322 5.322
17 C -0.046 4.046
18 C 0.130 3.870
19 C -0.570 4.570
20 H 0.077 0.923
21 C -0.141 4.141
22 N -0.535 5.535
23 Si 0.724 3.276
24 H -0.202 1.202
25 H -0.212 1.212
26 H -0.201 1.201
27 C -0.210 4.210
28 C -0.088 4.088
29 H 0.067 0.933
30 H 0.071 0.929
31 H 0.072 0.928
32 H 0.096 0.904
33 H 0.079 0.921
34 H 0.087 0.913
35 H 0.078 0.922
36 H 0.083 0.917
37 H 0.081 0.919
38 H 0.076 0.924
39 H 0.097 0.903
40 H 0.167 0.833
41 H 0.044 0.956
42 H 0.087 0.913
43 H 0.126 0.874
44 H 0.130 0.870
45 H 0.053 0.947
46 H 0.085 0.915
47 H 0.073 0.927
48 H 0.048 0.952
49 H 0.053 0.947
50 H 0.074 0.926
51 H 0.148 0.852
52 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -5.369 18.564 -9.869 21.699
hybrid contribution -0.955 -0.478 1.154 1.572
sum -6.324 18.086 -8.716 21.049
Atomic orbital electron populations
1.21820 0.96401 1.01533 1.01302 1.21510 0.94853 0.95723 1.02969
1.21885 0.94238 0.96749 0.97947 0.91489 1.22387 0.97376 0.98297
0.97076 1.22462 0.95227 0.97943 1.00694 1.22423 0.97077 0.98105
0.97622 1.22163 0.93882 0.89665 0.96912 0.94536 1.60916 1.03060
1.10224 1.57106 1.20663 0.88773 0.93831 0.98173 1.19186 1.07942
0.95926 0.94382 1.20474 0.96057 0.93864 0.96642 1.20571 1.11245
0.95748 0.97024 1.17947 0.90692 0.84618 0.93298 1.47090 1.63764
1.09345 1.11985 1.21469 0.96620 0.98692 0.87788 1.19273 0.96839
0.90648 0.80289 1.21550 1.02116 1.28484 1.04881 0.92297 1.24959
0.97214 0.96479 0.95400 1.69922 1.35272 1.39650 1.08630 0.86583
0.84027 0.79732 0.77281 1.20217 1.21199 1.20084 1.20840 1.05882
0.95592 0.98705 1.20652 0.97812 0.93764 0.96552 0.93258 0.92888
0.92796 0.90413 0.92091 0.91267 0.92171 0.91710 0.91942 0.92395
0.90310 0.83313 0.95583 0.91260 0.87379 0.86957 0.94651 0.91491
0.92663 0.95239 0.94666 0.92598 0.85186 0.87576
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.36 9.75 37.16 0.36 -1.00 16
2 C -0.11 -1.11 4.16 -26.73 -0.11 -1.22 16
3 C -0.09 -0.82 2.95 -89.50 -0.26 -1.08 16
4 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
5 C -0.11 -0.94 5.45 -25.07 -0.14 -1.07 16
6 C -0.13 -1.00 6.91 -24.74 -0.17 -1.17 16
7 C -0.11 -1.06 5.84 -25.07 -0.15 -1.21 16
8 C 0.08 0.84 3.21 -66.60 -0.21 0.63 16
9 H 0.04 0.38 8.03 -51.93 -0.42 -0.04 16
10 N -0.68 -8.04 5.41 -106.81 -0.58 -8.62 16
11 C 0.11 1.44 5.63 -4.98 -0.03 1.42 16
12 C -0.17 -2.66 5.40 -104.59 -0.56 -3.23 16
13 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16
14 C -0.22 -3.94 9.21 -39.38 -0.36 -4.30 16
15 C 0.24 4.93 6.55 -83.79 -0.55 4.38 16
16 N -0.62 -13.32 2.99 -181.00 -0.54 -13.86 16
17 C 0.10 1.75 10.19 59.85 0.61 2.36 16
18 C 0.25 6.29 4.92 -5.20 -0.03 6.26 16
19 C -0.53 -14.56 9.39 -34.44 -0.32 -14.89 16
20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16
21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16
22 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16
23 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16
24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
27 C -0.19 -3.82 9.21 -39.38 -0.36 -4.18 16
28 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16
29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.05 0.43 7.45 -51.93 -0.39 0.05 16
31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
32 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16
33 H 0.06 0.64 6.42 -51.93 -0.33 0.31 16
34 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16
35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16
36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
39 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16
40 H 0.34 4.26 6.06 -39.29 -0.24 4.02 16
41 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16
42 H 0.07 0.84 7.59 -51.93 -0.39 0.44 16
43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16
44 H 0.11 1.80 6.14 -52.49 -0.32 1.48 16
45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16
46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16
47 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16
48 H 0.03 0.78 8.07 -51.92 -0.42 0.36 16
49 H 0.04 0.94 6.19 -51.93 -0.32 0.62 16
50 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
51 H 0.13 2.92 6.14 -52.49 -0.32 2.60 16
52 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16
LS Contribution 401.59 15.07 6.05 6.05
Total: -1.00 -28.14 401.59 -11.82 -39.96
By element:
Atomic # 1 Polarization: 13.88 SS G_CDS: -9.32 Total: 4.56 kcal
Atomic # 6 Polarization: -16.29 SS G_CDS: -3.15 Total: -19.44 kcal
Atomic # 7 Polarization: -47.08 SS G_CDS: -0.38 Total: -47.47 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -28.14 -11.82 -39.96 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000154134101.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.855 kcal
(2) G-P(sol) polarization free energy of solvation -28.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds