Wall clock time and date at job start Tue Mar 31 2020 11:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 H 1.09004 * 110.05180 * 55.24792 * 3 2 1 5 5 C 1.54268 * 110.03377 * 293.83193 * 3 2 1 6 6 C 1.54892 * 104.19400 * 217.10768 * 5 3 2 7 7 C 1.54892 * 102.74869 * 37.94192 * 6 5 3 8 8 C 1.53872 * 110.02868 * 176.66356 * 3 2 1 9 9 H 1.09004 * 110.03224 * 238.61762 * 8 3 2 10 10 N 1.46898 * 110.03638 * 359.97438 * 8 3 2 11 11 C 1.46895 * 111.00313 * 192.10577 * 10 8 3 12 12 C 1.50696 * 109.47436 * 180.02562 * 11 10 8 13 13 C 1.38285 * 119.92962 * 89.99306 * 12 11 10 14 14 C 1.38105 * 120.07581 * 180.02562 * 13 12 11 15 15 C 1.38906 * 119.92474 * 0.27821 * 14 13 12 16 16 N 1.39675 * 120.07827 * 179.72665 * 15 14 13 17 17 C 1.46497 * 119.99660 * 0.02562 * 16 15 14 18 18 C 1.46496 * 120.00287 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.47093 * 90.00052 * 18 16 15 20 20 H 1.07996 * 119.99755 * 0.02562 * 19 18 16 21 21 C 1.37875 * 119.99981 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00158 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00240 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47029 * 59.99925 * 23 21 19 25 25 H 1.48497 * 109.47543 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47018 * 300.00521 * 23 21 19 27 27 C 1.38915 * 119.85076 * 359.44361 * 15 14 13 28 28 C 1.38105 * 119.92154 * 0.57884 * 27 15 14 29 29 H 1.09002 * 109.46890 * 299.99913 * 1 2 3 30 30 H 1.09004 * 109.46825 * 59.99813 * 1 2 3 31 31 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46890 * 240.00087 * 2 1 3 33 33 H 1.08996 * 109.46918 * 119.99894 * 2 1 3 34 34 H 1.09005 * 110.48314 * 335.78481 * 5 3 2 35 35 H 1.09000 * 110.48699 * 98.29256 * 5 3 2 36 36 H 1.08999 * 110.75549 * 156.25314 * 6 5 3 37 37 H 1.08994 * 110.75537 * 279.62760 * 6 5 3 38 38 H 1.09004 * 110.48118 * 203.38207 * 7 6 5 39 39 H 1.08993 * 110.48613 * 80.73401 * 7 6 5 40 40 H 1.00899 * 110.99745 * 316.06019 * 10 8 3 41 41 H 1.08997 * 109.47207 * 59.99764 * 11 10 8 42 42 H 1.09005 * 109.47011 * 299.99952 * 11 10 8 43 43 H 1.07993 * 119.96237 * 359.97438 * 13 12 11 44 44 H 1.07997 * 120.03816 * 180.02562 * 14 13 12 45 45 H 1.08996 * 109.47908 * 90.00031 * 17 16 15 46 46 H 1.09005 * 109.47408 * 210.00168 * 17 16 15 47 47 H 1.09007 * 109.46854 * 329.99511 * 17 16 15 48 48 H 1.09008 * 109.47198 * 210.00048 * 18 16 15 49 49 H 1.09004 * 109.47532 * 329.99749 * 18 16 15 50 50 H 0.97005 * 120.00321 * 179.97438 * 22 21 19 51 51 H 1.08001 * 120.03964 * 180.25225 * 27 15 14 52 52 H 1.08004 * 119.95673 * 179.69430 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6143 1.9894 0.8413 5 6 1.6641 2.1360 -1.3258 6 6 2.8841 3.0360 -1.6429 7 6 4.0805 2.1609 -1.1934 8 6 3.5764 1.4584 0.0841 9 1 3.8963 2.0123 0.9667 10 7 4.0916 0.0838 0.1398 11 6 5.5140 0.0691 0.5063 12 6 6.0062 -1.3545 0.5526 13 6 6.5306 -1.9405 -0.5848 14 6 6.9821 -3.2451 -0.5459 15 6 6.9036 -3.9706 0.6360 16 7 7.3540 -5.2921 0.6774 17 6 7.9105 -5.9143 -0.5264 18 6 7.2709 -6.0555 1.9250 19 6 5.9459 -6.7706 1.9890 20 1 5.2369 -6.6671 1.1810 21 6 5.6393 -7.5578 3.0786 22 7 6.5030 -7.6843 4.0623 23 14 3.9967 -8.4437 3.1584 24 1 3.8762 -9.3682 2.0025 25 1 3.9124 -9.2176 4.4229 26 1 2.8950 -7.4487 3.1132 27 6 6.3815 -3.3770 1.7783 28 6 5.9314 -2.0722 1.7323 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5192 1.3978 -2.1146 35 1 0.7650 2.7392 -1.1992 36 1 2.9404 3.2482 -2.7106 37 1 2.8430 3.9598 -1.0660 38 1 4.9462 2.7843 -0.9697 39 1 4.3258 1.4268 -1.9609 40 1 3.5484 -0.4804 0.7759 41 1 5.6416 0.5301 1.4858 42 1 6.0860 0.6270 -0.2351 43 1 6.5865 -1.3776 -1.5048 44 1 7.3920 -3.7020 -1.4345 45 1 8.9860 -5.7409 -0.5611 46 1 7.7159 -6.9866 -0.5044 47 1 7.4434 -5.4785 -1.4097 48 1 8.0797 -6.7855 1.9588 49 1 7.3587 -5.3765 2.7731 50 1 6.2872 -8.2379 4.8291 51 1 6.3228 -3.9370 2.6999 52 1 5.5209 -1.6117 2.6188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154134101.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:16 Heat of formation + Delta-G solvation = 15.897089 kcal Electronic energy + Delta-G solvation = -26424.148625 eV Core-core repulsion = 23001.470011 eV Total energy + Delta-G solvation = -3422.678614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.50143 -38.80223 -36.08121 -34.13573 -33.23176 -32.65662 -30.41655 -30.00950 -27.80246 -27.71965 -27.12650 -25.21764 -23.78238 -22.98614 -22.09966 -21.43958 -20.70677 -19.52957 -18.96230 -16.72111 -16.48100 -16.14243 -15.81568 -15.29150 -14.99708 -14.61237 -14.46028 -14.16929 -14.06936 -13.70152 -13.47405 -13.32973 -13.02129 -12.84417 -12.56041 -12.35080 -12.16961 -11.94244 -11.61561 -11.50631 -11.39389 -11.34220 -11.23329 -11.16153 -11.00039 -10.90161 -10.75801 -10.67180 -10.62691 -10.48897 -10.41876 -10.26175 -9.88011 -9.74565 -8.82968 -8.50376 -8.30313 -8.22174 -6.45080 -6.01134 -4.17436 2.13671 2.25720 3.27999 3.32282 3.35804 4.14825 4.23429 4.40440 4.41520 4.46046 4.62820 4.81270 5.07301 5.12140 5.20825 5.21456 5.27216 5.33757 5.38938 5.44002 5.48914 5.51829 5.59426 5.64436 5.67416 5.74129 5.77623 5.83676 5.88134 5.92359 5.94903 6.02449 6.03779 6.06095 6.09521 6.18246 6.24389 6.30177 6.37397 6.42222 6.45804 6.67293 6.95633 7.04574 7.17991 7.23960 7.28209 7.35456 7.52963 7.63107 7.81072 8.15881 8.28087 8.50505 8.91602 9.49370 10.95631 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.002958 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.450683 B = 9463.412979 C =10796.123385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.089 4.089 4 H 0.067 0.933 5 C -0.114 4.114 6 C -0.125 4.125 7 C -0.114 4.114 8 C 0.084 3.916 9 H 0.037 0.963 10 N -0.679 5.679 11 C 0.114 3.886 12 C -0.171 4.171 13 C -0.051 4.051 14 C -0.223 4.223 15 C 0.242 3.758 16 N -0.616 5.616 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.531 4.531 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.188 4.188 28 C -0.068 4.068 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.345 0.655 41 H 0.026 0.974 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.130 0.870 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 18.949 -9.416 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.108 4.108 4 H 0.085 0.915 5 C -0.151 4.151 6 C -0.163 4.163 7 C -0.152 4.152 8 C -0.026 4.026 9 H 0.055 0.945 10 N -0.313 5.313 11 C -0.014 4.014 12 C -0.174 4.174 13 C -0.070 4.070 14 C -0.246 4.246 15 C 0.134 3.866 16 N -0.322 5.322 17 C -0.046 4.046 18 C 0.130 3.870 19 C -0.570 4.570 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.210 4.210 28 C -0.088 4.088 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.167 0.833 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.148 0.852 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.369 18.564 -9.869 21.699 hybrid contribution -0.955 -0.478 1.154 1.572 sum -6.324 18.086 -8.716 21.049 Atomic orbital electron populations 1.21820 0.96401 1.01533 1.01302 1.21510 0.94853 0.95723 1.02969 1.21885 0.94238 0.96749 0.97947 0.91489 1.22387 0.97376 0.98297 0.97076 1.22462 0.95227 0.97943 1.00694 1.22423 0.97077 0.98105 0.97622 1.22163 0.93882 0.89665 0.96912 0.94536 1.60916 1.03060 1.10224 1.57106 1.20663 0.88773 0.93831 0.98173 1.19186 1.07942 0.95926 0.94382 1.20474 0.96057 0.93864 0.96642 1.20571 1.11245 0.95748 0.97024 1.17947 0.90692 0.84618 0.93298 1.47090 1.63764 1.09345 1.11985 1.21469 0.96620 0.98692 0.87788 1.19273 0.96839 0.90648 0.80289 1.21550 1.02116 1.28484 1.04881 0.92297 1.24959 0.97214 0.96479 0.95400 1.69922 1.35272 1.39650 1.08630 0.86583 0.84027 0.79732 0.77281 1.20217 1.21199 1.20084 1.20840 1.05882 0.95592 0.98705 1.20652 0.97812 0.93764 0.96552 0.93258 0.92888 0.92796 0.90413 0.92091 0.91267 0.92171 0.91710 0.91942 0.92395 0.90310 0.83313 0.95583 0.91260 0.87379 0.86957 0.94651 0.91491 0.92663 0.95239 0.94666 0.92598 0.85186 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.75 37.16 0.36 -1.00 16 2 C -0.11 -1.11 4.16 -26.73 -0.11 -1.22 16 3 C -0.09 -0.82 2.95 -89.50 -0.26 -1.08 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.11 -0.94 5.45 -25.07 -0.14 -1.07 16 6 C -0.13 -1.00 6.91 -24.74 -0.17 -1.17 16 7 C -0.11 -1.06 5.84 -25.07 -0.15 -1.21 16 8 C 0.08 0.84 3.21 -66.60 -0.21 0.63 16 9 H 0.04 0.38 8.03 -51.93 -0.42 -0.04 16 10 N -0.68 -8.04 5.41 -106.81 -0.58 -8.62 16 11 C 0.11 1.44 5.63 -4.98 -0.03 1.42 16 12 C -0.17 -2.66 5.40 -104.59 -0.56 -3.23 16 13 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 14 C -0.22 -3.94 9.21 -39.38 -0.36 -4.30 16 15 C 0.24 4.93 6.55 -83.79 -0.55 4.38 16 16 N -0.62 -13.32 2.99 -181.00 -0.54 -13.86 16 17 C 0.10 1.75 10.19 59.85 0.61 2.36 16 18 C 0.25 6.29 4.92 -5.20 -0.03 6.26 16 19 C -0.53 -14.56 9.39 -34.44 -0.32 -14.89 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 23 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.19 -3.82 9.21 -39.38 -0.36 -4.18 16 28 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.43 7.45 -51.93 -0.39 0.05 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 33 H 0.06 0.64 6.42 -51.93 -0.33 0.31 16 34 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.34 4.26 6.06 -39.29 -0.24 4.02 16 41 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 42 H 0.07 0.84 7.59 -51.93 -0.39 0.44 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.11 1.80 6.14 -52.49 -0.32 1.48 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 48 H 0.03 0.78 8.07 -51.92 -0.42 0.36 16 49 H 0.04 0.94 6.19 -51.93 -0.32 0.62 16 50 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 51 H 0.13 2.92 6.14 -52.49 -0.32 2.60 16 52 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -28.14 401.59 -11.82 -39.96 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -9.32 Total: 4.56 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -3.15 Total: -19.44 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.38 Total: -47.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.14 -11.82 -39.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154134101.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.855 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds