Wall clock time and date at job start Tue Mar 31 2020 11:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 H 1.09004 * 110.05180 * 55.24792 * 3 2 1 5 5 C 1.54268 * 110.03377 * 293.83193 * 3 2 1 6 6 C 1.54892 * 104.19400 * 217.10768 * 5 3 2 7 7 C 1.54892 * 102.74869 * 37.94192 * 6 5 3 8 8 C 1.53872 * 110.02868 * 176.66356 * 3 2 1 9 9 H 1.09004 * 110.03224 * 238.61762 * 8 3 2 10 10 N 1.46898 * 110.03638 * 359.97438 * 8 3 2 11 11 C 1.46895 * 111.00313 * 192.10577 * 10 8 3 12 12 C 1.50696 * 109.47436 * 180.02562 * 11 10 8 13 13 C 1.38285 * 119.92962 * 89.99306 * 12 11 10 14 14 C 1.38105 * 120.07581 * 180.02562 * 13 12 11 15 15 C 1.38906 * 119.92474 * 0.27821 * 14 13 12 16 16 N 1.39675 * 120.07827 * 179.72665 * 15 14 13 17 17 C 1.46497 * 119.99660 * 0.02562 * 16 15 14 18 18 C 1.46496 * 120.00287 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.47093 * 90.00052 * 18 16 15 20 20 H 1.07996 * 119.99755 * 0.02562 * 19 18 16 21 21 C 1.37875 * 119.99981 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00158 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00240 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47029 * 59.99925 * 23 21 19 25 25 H 1.48497 * 109.47543 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47018 * 300.00521 * 23 21 19 27 27 C 1.38915 * 119.85076 * 359.44361 * 15 14 13 28 28 C 1.38105 * 119.92154 * 0.57884 * 27 15 14 29 29 H 1.09002 * 109.46890 * 299.99913 * 1 2 3 30 30 H 1.09004 * 109.46825 * 59.99813 * 1 2 3 31 31 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46890 * 240.00087 * 2 1 3 33 33 H 1.08996 * 109.46918 * 119.99894 * 2 1 3 34 34 H 1.09005 * 110.48314 * 335.78481 * 5 3 2 35 35 H 1.09000 * 110.48699 * 98.29256 * 5 3 2 36 36 H 1.08999 * 110.75549 * 156.25314 * 6 5 3 37 37 H 1.08994 * 110.75537 * 279.62760 * 6 5 3 38 38 H 1.09004 * 110.48118 * 203.38207 * 7 6 5 39 39 H 1.08993 * 110.48613 * 80.73401 * 7 6 5 40 40 H 1.00899 * 110.99745 * 316.06019 * 10 8 3 41 41 H 1.08997 * 109.47207 * 59.99764 * 11 10 8 42 42 H 1.09005 * 109.47011 * 299.99952 * 11 10 8 43 43 H 1.07993 * 119.96237 * 359.97438 * 13 12 11 44 44 H 1.07997 * 120.03816 * 180.02562 * 14 13 12 45 45 H 1.08996 * 109.47908 * 90.00031 * 17 16 15 46 46 H 1.09005 * 109.47408 * 210.00168 * 17 16 15 47 47 H 1.09007 * 109.46854 * 329.99511 * 17 16 15 48 48 H 1.09008 * 109.47198 * 210.00048 * 18 16 15 49 49 H 1.09004 * 109.47532 * 329.99749 * 18 16 15 50 50 H 0.97005 * 120.00321 * 179.97438 * 22 21 19 51 51 H 1.08001 * 120.03964 * 180.25225 * 27 15 14 52 52 H 1.08004 * 119.95673 * 179.69430 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6143 1.9894 0.8413 5 6 1.6641 2.1360 -1.3258 6 6 2.8841 3.0360 -1.6429 7 6 4.0805 2.1609 -1.1934 8 6 3.5764 1.4584 0.0841 9 1 3.8963 2.0123 0.9667 10 7 4.0916 0.0838 0.1398 11 6 5.5140 0.0691 0.5063 12 6 6.0062 -1.3545 0.5526 13 6 6.5306 -1.9405 -0.5848 14 6 6.9821 -3.2451 -0.5459 15 6 6.9036 -3.9706 0.6360 16 7 7.3540 -5.2921 0.6774 17 6 7.9105 -5.9143 -0.5264 18 6 7.2709 -6.0555 1.9250 19 6 5.9459 -6.7706 1.9890 20 1 5.2369 -6.6671 1.1810 21 6 5.6393 -7.5578 3.0786 22 7 6.5030 -7.6843 4.0623 23 14 3.9967 -8.4437 3.1584 24 1 3.8762 -9.3682 2.0025 25 1 3.9124 -9.2176 4.4229 26 1 2.8950 -7.4487 3.1132 27 6 6.3815 -3.3770 1.7783 28 6 5.9314 -2.0722 1.7323 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5192 1.3978 -2.1146 35 1 0.7650 2.7392 -1.1992 36 1 2.9404 3.2482 -2.7106 37 1 2.8430 3.9598 -1.0660 38 1 4.9462 2.7843 -0.9697 39 1 4.3258 1.4268 -1.9609 40 1 3.5484 -0.4804 0.7759 41 1 5.6416 0.5301 1.4858 42 1 6.0860 0.6270 -0.2351 43 1 6.5865 -1.3776 -1.5048 44 1 7.3920 -3.7020 -1.4345 45 1 8.9860 -5.7409 -0.5611 46 1 7.7159 -6.9866 -0.5044 47 1 7.4434 -5.4785 -1.4097 48 1 8.0797 -6.7855 1.9588 49 1 7.3587 -5.3765 2.7731 50 1 6.2872 -8.2379 4.8291 51 1 6.3228 -3.9370 2.6999 52 1 5.5209 -1.6117 2.6188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154134101.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:15 Heat of formation + Delta-G solvation = 3.401480 kcal Electronic energy + Delta-G solvation = -26424.690475 eV Core-core repulsion = 23001.470011 eV Total energy + Delta-G solvation = -3423.220464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57845 -39.94570 -37.53481 -35.34478 -34.59070 -33.95081 -31.88124 -31.28862 -29.62789 -28.44177 -28.14527 -26.66175 -25.28473 -23.85642 -23.44120 -22.94194 -21.43497 -20.95774 -19.73945 -18.63736 -18.14457 -17.04710 -16.92111 -16.62519 -16.25783 -15.92788 -15.63107 -15.34899 -15.23619 -14.91724 -14.78264 -14.49175 -14.29589 -14.05662 -14.01262 -13.51837 -13.26339 -13.17432 -13.13023 -12.99781 -12.69735 -12.64176 -12.52881 -12.35093 -12.16640 -12.13663 -11.82944 -11.77506 -11.77260 -11.57097 -11.40981 -11.34348 -11.33225 -11.18590 -10.64611 -10.40260 -9.66275 -9.21404 -8.36389 -7.79825 -6.38063 0.71320 0.85403 1.36651 1.38531 1.46870 2.33858 2.63677 3.03628 3.05757 3.52403 3.69908 3.75885 4.01305 4.06106 4.17073 4.26376 4.36437 4.40182 4.41948 4.48676 4.52295 4.59670 4.64795 4.71102 4.72945 4.76579 4.78202 4.85815 4.86961 4.89958 4.95039 5.01464 5.08910 5.13163 5.14254 5.20306 5.22885 5.24631 5.29750 5.33278 5.34758 5.45863 5.51709 5.59206 5.63247 5.68650 5.70090 5.93931 6.06865 6.19791 6.30301 6.50091 6.54954 6.82338 6.94055 7.33851 8.82673 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.002958 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.450683 B = 9463.412979 C =10796.123385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.087 4.087 4 H 0.073 0.927 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.113 4.113 8 C 0.083 3.917 9 H 0.037 0.963 10 N -0.683 5.683 11 C 0.119 3.881 12 C -0.157 4.157 13 C -0.048 4.048 14 C -0.218 4.218 15 C 0.213 3.787 16 N -0.633 5.633 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.542 4.542 20 H 0.049 0.951 21 C 0.013 3.987 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.273 1.273 27 C -0.216 4.216 28 C -0.069 4.069 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.340 0.660 41 H 0.032 0.968 42 H 0.083 0.917 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.094 0.906 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 21.100 -11.184 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.106 4.106 4 H 0.091 0.909 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.151 4.151 8 C -0.027 4.027 9 H 0.055 0.945 10 N -0.317 5.317 11 C -0.009 4.009 12 C -0.160 4.160 13 C -0.067 4.067 14 C -0.240 4.240 15 C 0.108 3.892 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.581 4.581 20 H 0.067 0.933 21 C -0.186 4.186 22 N -0.567 5.567 23 Si 0.785 3.215 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.198 1.198 27 C -0.239 4.239 28 C -0.089 4.089 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.162 0.838 41 H 0.050 0.950 42 H 0.101 0.899 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.112 0.888 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.651 20.749 -11.667 24.716 hybrid contribution -0.556 -1.010 1.680 2.037 sum -7.207 19.739 -9.988 23.266 Atomic orbital electron populations 1.21796 0.95594 1.01412 1.02005 1.21442 0.95557 0.96087 1.01640 1.21877 0.93592 0.96272 0.98816 0.90890 1.22369 0.98099 0.98258 0.96177 1.22453 0.94197 0.97890 1.01339 1.22402 0.97918 0.98035 0.96732 1.22244 0.94499 0.88549 0.97415 0.94468 1.60916 1.02476 1.11426 1.56891 1.20625 0.89467 0.91726 0.99065 1.19524 1.05957 0.97091 0.93390 1.20850 0.94720 0.93300 0.97849 1.20809 1.10576 0.96233 0.96425 1.18209 0.92070 0.84449 0.94458 1.46960 1.65422 1.09970 1.11697 1.21598 0.97733 0.98032 0.87125 1.18762 0.95233 0.89756 0.81719 1.21750 1.02785 1.28838 1.04725 0.93304 1.25778 1.00718 0.97184 0.94950 1.70031 1.37110 1.40356 1.09170 0.85567 0.79571 0.78598 0.77716 1.19327 1.20336 1.19832 1.20745 1.08315 0.97016 0.97779 1.20815 0.97317 0.92671 0.98065 0.92647 0.92053 0.93373 0.91961 0.93145 0.91946 0.91023 0.90948 0.91040 0.91792 0.91469 0.83815 0.95020 0.89898 0.84336 0.85036 0.92924 0.92547 0.90371 0.97311 0.97160 0.92365 0.88750 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.75 71.98 0.70 -1.76 16 2 C -0.11 -2.03 4.16 30.60 0.13 -1.90 16 3 C -0.09 -1.40 2.95 -10.07 -0.03 -1.43 16 4 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 5 C -0.11 -1.56 5.45 31.67 0.17 -1.39 16 6 C -0.12 -1.57 6.91 31.89 0.22 -1.35 16 7 C -0.11 -1.80 5.84 31.67 0.18 -1.62 16 8 C 0.08 1.48 3.21 45.64 0.15 1.62 16 9 H 0.04 0.68 8.03 -2.38 -0.02 0.66 16 10 N -0.68 -14.85 5.41 -491.85 -2.66 -17.51 16 11 C 0.12 2.73 5.63 85.56 0.48 3.21 16 12 C -0.16 -4.59 5.40 -19.84 -0.11 -4.70 16 13 C -0.05 -1.41 9.69 22.25 0.22 -1.20 16 14 C -0.22 -7.36 9.21 22.40 0.21 -7.16 16 15 C 0.21 8.85 6.55 38.21 0.25 9.10 16 16 N -0.63 -28.22 2.99 -726.55 -2.17 -30.40 16 17 C 0.10 3.48 10.19 127.77 1.30 4.78 16 18 C 0.27 14.25 4.92 85.63 0.42 14.67 16 19 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 20 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 21 C 0.01 0.73 5.46 84.65 0.46 1.20 16 22 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 23 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 27 C -0.22 -9.16 9.21 22.40 0.21 -8.96 16 28 C -0.07 -2.39 9.69 22.25 0.22 -2.17 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.89 7.45 -2.38 -0.02 0.87 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.35 7.85 -2.39 -0.02 1.33 16 33 H 0.05 1.03 6.42 -2.39 -0.02 1.02 16 34 H 0.06 0.97 7.79 -2.38 -0.02 0.95 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.07 1.25 8.05 -2.39 -0.02 1.23 16 40 H 0.34 7.99 6.06 -89.70 -0.54 7.44 16 41 H 0.03 0.70 8.05 -2.39 -0.02 0.69 16 42 H 0.08 1.71 7.59 -2.38 -0.02 1.70 16 43 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 44 H 0.13 3.88 6.14 -2.91 -0.02 3.86 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 46 H 0.06 2.08 8.07 -2.38 -0.02 2.06 16 47 H 0.08 2.36 6.20 -2.38 -0.01 2.35 16 48 H 0.01 0.50 8.07 -2.38 -0.02 0.48 16 49 H 0.01 0.60 6.19 -2.38 -0.01 0.59 16 50 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 51 H 0.09 4.62 6.14 -2.91 -0.02 4.60 16 52 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -62.31 401.59 3.23 -59.09 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.33 Total: 26.67 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 5.42 Total: -29.69 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.55 Total: -102.52 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -62.31 3.23 -59.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154134101.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.487 kcal (2) G-P(sol) polarization free energy of solvation -62.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds