Wall clock time and date at job start Tue Mar 31 2020 11:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47072 * 2 1 4 4 H 1.09001 * 110.01910 * 306.39136 * 3 2 1 5 5 C 1.54266 * 110.07469 * 67.81052 * 3 2 1 6 6 C 1.54887 * 104.19689 * 142.91807 * 5 3 2 7 7 C 1.55015 * 102.75206 * 322.04485 * 6 5 3 8 8 C 1.53878 * 110.03078 * 184.99909 * 3 2 1 9 9 H 1.09003 * 110.03385 * 0.02562 * 8 3 2 10 10 N 1.46906 * 110.02982 * 121.38269 * 8 3 2 11 11 C 1.46904 * 110.99879 * 204.30950 * 10 8 3 12 12 C 1.50698 * 109.46742 * 179.97438 * 11 10 8 13 13 C 1.38290 * 119.92466 * 90.00482 * 12 11 10 14 14 C 1.38100 * 120.07522 * 179.97438 * 13 12 11 15 15 C 1.38908 * 119.92701 * 359.97438 * 14 13 12 16 16 N 1.39671 * 120.07904 * 179.97438 * 15 14 13 17 17 C 1.46507 * 119.99528 * 0.02562 * 16 15 14 18 18 C 1.46493 * 120.00406 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47128 * 269.99970 * 18 16 15 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 16 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.38915 * 119.84975 * 0.25894 * 15 14 13 28 28 C 1.38107 * 119.92151 * 359.48742 * 27 15 14 29 29 H 1.08994 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46827 * 300.00173 * 1 2 3 31 31 H 1.08997 * 109.47138 * 59.99582 * 1 2 3 32 32 H 1.08996 * 109.47443 * 240.00177 * 2 1 3 33 33 H 1.08999 * 109.47627 * 119.99835 * 2 1 3 34 34 H 1.08995 * 110.48547 * 261.59259 * 5 3 2 35 35 H 1.09000 * 110.48458 * 24.23807 * 5 3 2 36 36 H 1.08998 * 110.76149 * 80.37060 * 6 5 3 37 37 H 1.08998 * 110.75466 * 203.74670 * 6 5 3 38 38 H 1.09000 * 110.50725 * 279.29512 * 7 6 5 39 39 H 1.09007 * 110.51924 * 156.61758 * 7 6 5 40 40 H 1.00894 * 111.00228 * 80.35453 * 10 8 3 41 41 H 1.09004 * 109.46962 * 59.99635 * 11 10 8 42 42 H 1.09000 * 109.47136 * 299.99995 * 11 10 8 43 43 H 1.08005 * 119.95866 * 359.95223 * 13 12 11 44 44 H 1.08005 * 120.03641 * 180.02562 * 14 13 12 45 45 H 1.08995 * 109.47239 * 269.99741 * 17 16 15 46 46 H 1.08994 * 109.46878 * 29.99911 * 17 16 15 47 47 H 1.09002 * 109.46817 * 150.00291 * 17 16 15 48 48 H 1.09001 * 109.47786 * 150.00243 * 18 16 15 49 49 H 1.09006 * 109.47401 * 29.99828 * 18 16 15 50 50 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 51 51 H 1.07999 * 120.03911 * 179.72597 * 27 15 14 52 52 H 1.07998 * 119.96178 * 180.25394 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9969 -0.8244 5 6 1.7006 2.1242 1.3416 6 6 2.9288 3.0216 1.6332 7 6 4.1134 2.1500 1.1433 8 6 3.5735 1.4594 -0.1260 9 1 3.9544 0.4399 -0.1876 10 7 3.9720 2.2176 -1.3195 11 6 5.2970 1.7954 -1.7932 12 6 5.6706 2.5928 -3.0162 13 6 6.3551 3.7866 -2.8788 14 6 6.6995 4.5195 -3.9974 15 6 6.3582 4.0562 -5.2617 16 7 6.7045 4.7952 -6.3952 17 6 7.4291 6.0604 -6.2514 18 6 6.3432 4.3053 -7.7276 19 6 7.4542 3.4389 -8.2626 20 1 8.3409 3.2704 -7.6695 21 6 7.3386 2.8613 -9.5092 22 7 6.2591 3.0668 -10.2317 23 14 8.7161 1.7880 -10.1725 24 1 8.3493 1.2902 -11.5227 25 1 9.9659 2.5850 -10.2609 26 1 8.9277 0.6348 -9.2611 27 6 5.6664 2.8590 -5.3958 28 6 5.3296 2.1284 -4.2732 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.7998 2.7302 1.2445 35 1 1.5773 1.3791 2.1276 36 1 2.8720 3.9505 1.0658 37 1 3.0143 3.2243 2.7007 38 1 4.3795 1.4089 1.8970 39 1 4.9731 2.7750 0.9013 40 1 3.9513 3.2103 -1.1409 41 1 5.2721 0.7351 -2.0448 42 1 6.0344 1.9655 -1.0088 43 1 6.6202 4.1462 -1.8955 44 1 7.2344 5.4516 -3.8894 45 1 6.7157 6.8792 -6.1594 46 1 8.0546 6.0214 -5.3597 47 1 8.0560 6.2216 -7.1284 48 1 6.1885 5.1519 -8.3966 49 1 5.4254 3.7206 -7.6634 50 1 5.5440 3.6244 -9.8873 51 1 5.3955 2.4981 -6.3771 52 1 4.7954 1.1956 -4.3770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154134229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:19 Heat of formation + Delta-G solvation = 4.265213 kcal Electronic energy + Delta-G solvation = -26116.439498 eV Core-core repulsion = 22693.256488 eV Total energy + Delta-G solvation = -3423.183010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.51404 -38.88137 -36.23684 -34.46865 -33.12337 -32.76725 -30.47107 -29.99043 -27.77888 -27.53731 -27.32459 -25.27289 -23.80138 -22.57493 -22.18166 -21.64584 -20.58923 -19.99146 -19.51971 -17.11631 -16.61830 -16.01914 -15.92572 -15.17638 -14.82672 -14.52554 -14.38275 -14.18486 -13.96514 -13.77037 -13.67817 -13.37166 -13.09506 -13.00179 -12.93686 -12.42192 -12.23036 -12.05827 -11.86292 -11.67349 -11.48018 -11.32412 -11.30487 -11.25489 -11.20028 -10.94332 -10.86216 -10.69266 -10.66412 -10.58698 -10.47693 -10.15815 -9.99802 -9.52142 -8.61920 -8.45793 -8.34595 -8.28713 -6.61108 -6.25839 -4.18721 2.06669 2.17461 3.40138 3.42112 3.60647 4.06723 4.11030 4.32842 4.43535 4.48334 4.56199 4.77851 4.91629 5.02935 5.11966 5.22094 5.24454 5.27726 5.30876 5.40468 5.43281 5.46000 5.50008 5.51982 5.59292 5.61964 5.64626 5.74269 5.76946 5.80749 5.86481 5.91254 5.95774 5.99431 6.01641 6.02124 6.14983 6.20605 6.30290 6.33654 6.37722 6.56741 6.80410 6.87809 7.01437 7.09366 7.12376 7.28960 7.45302 7.54324 7.96987 8.03523 8.36214 8.50140 8.74399 9.51847 10.91519 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002453 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.060534 B =11414.020336 C =12179.946595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.083 4.083 4 H 0.085 0.915 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.155 4.155 8 C 0.085 3.915 9 H 0.077 0.923 10 N -0.676 5.676 11 C 0.115 3.885 12 C -0.170 4.170 13 C -0.068 4.068 14 C -0.221 4.221 15 C 0.241 3.759 16 N -0.613 5.613 17 C 0.099 3.901 18 C 0.239 3.761 19 C -0.611 4.611 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.909 5.909 23 Si 1.069 2.931 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.287 1.287 27 C -0.188 4.188 28 C -0.050 4.050 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.340 0.660 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.019 0.981 49 H 0.026 0.974 50 H 0.267 0.733 51 H 0.128 0.872 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 -1.328 23.232 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.102 4.102 4 H 0.103 0.897 5 C -0.157 4.157 6 C -0.162 4.162 7 C -0.194 4.194 8 C -0.025 4.025 9 H 0.095 0.905 10 N -0.306 5.306 11 C -0.013 4.013 12 C -0.173 4.173 13 C -0.087 4.087 14 C -0.244 4.244 15 C 0.134 3.866 16 N -0.318 5.318 17 C -0.045 4.045 18 C 0.119 3.881 19 C -0.649 4.649 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.545 5.545 23 Si 0.897 3.103 24 H -0.207 1.207 25 H -0.215 1.215 26 H -0.213 1.213 27 C -0.211 4.211 28 C -0.069 4.069 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.159 0.841 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.037 0.963 49 H 0.044 0.956 50 H 0.078 0.922 51 H 0.146 0.854 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.599 -2.528 21.254 22.398 hybrid contribution 0.289 1.415 1.947 2.424 sum -6.310 -1.114 23.201 24.069 Atomic orbital electron populations 1.21777 0.96010 1.01305 1.01805 1.21592 0.95755 0.96160 1.01705 1.21861 0.94533 0.96122 0.97733 0.89691 1.22458 0.97702 0.98419 0.97144 1.22488 0.94868 0.98303 1.00506 1.23110 0.98048 0.99359 0.98911 1.22294 0.94906 0.97573 0.87747 0.90500 1.60703 1.28386 1.09285 1.32247 1.20678 0.88457 0.98615 0.93565 1.19201 1.06336 0.97769 0.93956 1.20506 0.97285 0.93993 0.96949 1.20506 1.09775 1.02777 0.91315 1.17936 0.91324 0.90638 0.86696 1.46857 1.58832 1.21131 1.05010 1.21466 0.95626 0.85580 1.01797 1.19341 0.96363 0.94417 0.77968 1.22379 1.04880 1.33126 1.04549 0.92891 1.25829 1.01141 0.97846 0.93624 1.70827 1.06969 1.37138 1.39541 0.83529 0.74473 0.75981 0.76295 1.20663 1.21463 1.21303 1.20857 1.04917 0.95847 0.99453 1.20639 0.96630 0.98294 0.91362 0.93078 0.92893 0.92628 0.91800 0.92442 0.91869 0.91797 0.91524 0.91950 0.91569 0.91805 0.84088 0.91077 0.95441 0.87718 0.86960 0.94620 0.92554 0.91501 0.96315 0.95632 0.92234 0.85419 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.77 37.16 0.36 -0.78 16 2 C -0.11 -0.94 5.06 -26.73 -0.14 -1.07 16 3 C -0.08 -0.73 2.72 -89.50 -0.24 -0.98 16 4 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 5 C -0.12 -0.91 5.54 -25.07 -0.14 -1.05 16 6 C -0.12 -0.95 6.91 -24.67 -0.17 -1.12 16 7 C -0.16 -1.28 6.23 -25.01 -0.16 -1.44 16 8 C 0.09 0.80 2.88 -66.59 -0.19 0.61 16 9 H 0.08 0.75 7.35 -51.93 -0.38 0.37 16 10 N -0.68 -7.68 6.10 -106.80 -0.65 -8.33 16 11 C 0.11 1.43 5.61 -4.97 -0.03 1.40 16 12 C -0.17 -2.63 5.39 -104.59 -0.56 -3.19 16 13 C -0.07 -1.05 9.69 -39.61 -0.38 -1.44 16 14 C -0.22 -3.87 9.21 -39.38 -0.36 -4.23 16 15 C 0.24 4.96 6.55 -83.79 -0.55 4.41 16 16 N -0.61 -13.37 2.99 -181.00 -0.54 -13.91 16 17 C 0.10 1.78 10.19 59.85 0.61 2.39 16 18 C 0.24 6.05 4.23 -5.19 -0.02 6.03 16 19 C -0.61 -16.98 9.39 -34.44 -0.32 -17.30 16 20 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 21 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 22 N -0.91 -26.96 13.65 55.43 0.76 -26.20 16 23 Si 1.07 25.10 29.90 -169.99 -5.08 20.01 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.19 -3.89 9.21 -39.38 -0.36 -4.26 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 7.51 -51.93 -0.39 -0.02 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.44 8.01 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.46 7.76 -51.93 -0.40 0.05 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.56 7.72 -51.92 -0.40 0.16 16 40 H 0.34 3.86 8.44 -39.29 -0.33 3.53 16 41 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 42 H 0.03 0.32 7.80 -51.93 -0.41 -0.09 16 43 H 0.10 1.35 8.06 -52.48 -0.42 0.92 16 44 H 0.11 1.78 6.14 -52.48 -0.32 1.46 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 47 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 48 H 0.02 0.49 7.94 -51.93 -0.41 0.08 16 49 H 0.03 0.68 6.05 -51.93 -0.31 0.36 16 50 H 0.27 7.85 7.22 -40.82 -0.29 7.55 16 51 H 0.13 2.92 6.14 -52.49 -0.32 2.60 16 52 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 405.03 15.07 6.10 6.10 Total: -1.00 -29.22 405.03 -11.95 -41.17 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -9.40 Total: 3.97 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -3.14 Total: -22.81 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.44 Total: -48.45 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.22 -11.95 -41.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154134229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.434 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds