Wall clock time and date at job start Tue Mar 31 2020 11:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47072 * 2 1 4 4 H 1.09001 * 110.01910 * 306.39136 * 3 2 1 5 5 C 1.54266 * 110.07469 * 67.81052 * 3 2 1 6 6 C 1.54887 * 104.19689 * 142.91807 * 5 3 2 7 7 C 1.55015 * 102.75206 * 322.04485 * 6 5 3 8 8 C 1.53878 * 110.03078 * 184.99909 * 3 2 1 9 9 H 1.09003 * 110.03385 * 0.02562 * 8 3 2 10 10 N 1.46906 * 110.02982 * 121.38269 * 8 3 2 11 11 C 1.46904 * 110.99879 * 204.30950 * 10 8 3 12 12 C 1.50698 * 109.46742 * 179.97438 * 11 10 8 13 13 C 1.38290 * 119.92466 * 90.00482 * 12 11 10 14 14 C 1.38100 * 120.07522 * 179.97438 * 13 12 11 15 15 C 1.38908 * 119.92701 * 359.97438 * 14 13 12 16 16 N 1.39671 * 120.07904 * 179.97438 * 15 14 13 17 17 C 1.46507 * 119.99528 * 0.02562 * 16 15 14 18 18 C 1.46493 * 120.00406 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47128 * 269.99970 * 18 16 15 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 16 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.38915 * 119.84975 * 0.25894 * 15 14 13 28 28 C 1.38107 * 119.92151 * 359.48742 * 27 15 14 29 29 H 1.08994 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46827 * 300.00173 * 1 2 3 31 31 H 1.08997 * 109.47138 * 59.99582 * 1 2 3 32 32 H 1.08996 * 109.47443 * 240.00177 * 2 1 3 33 33 H 1.08999 * 109.47627 * 119.99835 * 2 1 3 34 34 H 1.08995 * 110.48547 * 261.59259 * 5 3 2 35 35 H 1.09000 * 110.48458 * 24.23807 * 5 3 2 36 36 H 1.08998 * 110.76149 * 80.37060 * 6 5 3 37 37 H 1.08998 * 110.75466 * 203.74670 * 6 5 3 38 38 H 1.09000 * 110.50725 * 279.29512 * 7 6 5 39 39 H 1.09007 * 110.51924 * 156.61758 * 7 6 5 40 40 H 1.00894 * 111.00228 * 80.35453 * 10 8 3 41 41 H 1.09004 * 109.46962 * 59.99635 * 11 10 8 42 42 H 1.09000 * 109.47136 * 299.99995 * 11 10 8 43 43 H 1.08005 * 119.95866 * 359.95223 * 13 12 11 44 44 H 1.08005 * 120.03641 * 180.02562 * 14 13 12 45 45 H 1.08995 * 109.47239 * 269.99741 * 17 16 15 46 46 H 1.08994 * 109.46878 * 29.99911 * 17 16 15 47 47 H 1.09002 * 109.46817 * 150.00291 * 17 16 15 48 48 H 1.09001 * 109.47786 * 150.00243 * 18 16 15 49 49 H 1.09006 * 109.47401 * 29.99828 * 18 16 15 50 50 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 51 51 H 1.07999 * 120.03911 * 179.72597 * 27 15 14 52 52 H 1.07998 * 119.96178 * 180.25394 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9969 -0.8244 5 6 1.7006 2.1242 1.3416 6 6 2.9288 3.0216 1.6332 7 6 4.1134 2.1500 1.1433 8 6 3.5735 1.4594 -0.1260 9 1 3.9544 0.4399 -0.1876 10 7 3.9720 2.2176 -1.3195 11 6 5.2970 1.7954 -1.7932 12 6 5.6706 2.5928 -3.0162 13 6 6.3551 3.7866 -2.8788 14 6 6.6995 4.5195 -3.9974 15 6 6.3582 4.0562 -5.2617 16 7 6.7045 4.7952 -6.3952 17 6 7.4291 6.0604 -6.2514 18 6 6.3432 4.3053 -7.7276 19 6 7.4542 3.4389 -8.2626 20 1 8.3409 3.2704 -7.6695 21 6 7.3386 2.8613 -9.5092 22 7 6.2591 3.0668 -10.2317 23 14 8.7161 1.7880 -10.1725 24 1 8.3493 1.2902 -11.5227 25 1 9.9659 2.5850 -10.2609 26 1 8.9277 0.6348 -9.2611 27 6 5.6664 2.8590 -5.3958 28 6 5.3296 2.1284 -4.2732 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.7998 2.7302 1.2445 35 1 1.5773 1.3791 2.1276 36 1 2.8720 3.9505 1.0658 37 1 3.0143 3.2243 2.7007 38 1 4.3795 1.4089 1.8970 39 1 4.9731 2.7750 0.9013 40 1 3.9513 3.2103 -1.1409 41 1 5.2721 0.7351 -2.0448 42 1 6.0344 1.9655 -1.0088 43 1 6.6202 4.1462 -1.8955 44 1 7.2344 5.4516 -3.8894 45 1 6.7157 6.8792 -6.1594 46 1 8.0546 6.0214 -5.3597 47 1 8.0560 6.2216 -7.1284 48 1 6.1885 5.1519 -8.3966 49 1 5.4254 3.7206 -7.6634 50 1 5.5440 3.6244 -9.8873 51 1 5.3955 2.4981 -6.3771 52 1 4.7954 1.1956 -4.3770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154134229.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:18 Heat of formation + Delta-G solvation = -9.782499 kcal Electronic energy + Delta-G solvation = -26117.048652 eV Core-core repulsion = 22693.256488 eV Total energy + Delta-G solvation = -3423.792164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63101 -39.93754 -37.69843 -35.63257 -34.83983 -33.67388 -31.92562 -31.23017 -29.35561 -28.41904 -28.28217 -26.65093 -25.45220 -23.83774 -23.13247 -23.09708 -21.35362 -21.16732 -20.43951 -19.12002 -18.17150 -16.98780 -16.79826 -16.57361 -15.88447 -15.77858 -15.65204 -15.38378 -15.17910 -15.11295 -14.87786 -14.55539 -14.36134 -14.10256 -14.07958 -13.64345 -13.42365 -13.25000 -13.20844 -13.15719 -12.77720 -12.70437 -12.50589 -12.49293 -12.05633 -12.00277 -11.96495 -11.86888 -11.58290 -11.51466 -11.44177 -11.35479 -11.27335 -11.23146 -10.63046 -10.36995 -9.73436 -9.19650 -8.78811 -7.93463 -6.46490 0.64408 0.77449 1.48820 1.56167 1.76427 2.43672 2.54956 2.96700 3.08003 3.46361 3.67195 3.79219 3.97826 4.07489 4.10906 4.14795 4.28389 4.33651 4.37786 4.43613 4.49095 4.55084 4.60693 4.64185 4.69362 4.71172 4.73804 4.79587 4.81174 4.84246 4.84668 4.86613 4.97055 5.01017 5.03801 5.04843 5.16569 5.19770 5.23985 5.28964 5.34421 5.40668 5.50132 5.54078 5.58649 5.62947 5.82057 5.88264 5.97809 6.15026 6.28773 6.41494 6.57251 6.60825 6.82531 7.33123 8.64586 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002453 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.060534 B =11414.020336 C =12179.946595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.081 4.081 4 H 0.065 0.935 5 C -0.115 4.115 6 C -0.122 4.122 7 C -0.150 4.150 8 C 0.086 3.914 9 H 0.074 0.926 10 N -0.685 5.685 11 C 0.122 3.878 12 C -0.155 4.155 13 C -0.060 4.060 14 C -0.215 4.215 15 C 0.210 3.790 16 N -0.630 5.630 17 C 0.099 3.901 18 C 0.254 3.746 19 C -0.615 4.615 20 H 0.041 0.959 21 C -0.029 4.029 22 N -0.931 5.931 23 Si 1.115 2.885 24 H -0.279 1.279 25 H -0.269 1.269 26 H -0.275 1.275 27 C -0.218 4.218 28 C -0.056 4.056 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.342 0.658 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.144 0.856 44 H 0.134 0.866 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.004 0.996 49 H 0.004 0.996 50 H 0.256 0.744 51 H 0.089 0.911 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 -1.424 26.628 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.101 4.101 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.160 4.160 7 C -0.189 4.189 8 C -0.024 4.024 9 H 0.092 0.908 10 N -0.316 5.316 11 C -0.007 4.007 12 C -0.157 4.157 13 C -0.079 4.079 14 C -0.237 4.237 15 C 0.106 3.894 16 N -0.338 5.338 17 C -0.044 4.044 18 C 0.131 3.869 19 C -0.654 4.654 20 H 0.060 0.940 21 C -0.227 4.227 22 N -0.568 5.568 23 Si 0.937 3.063 24 H -0.205 1.205 25 H -0.194 1.194 26 H -0.200 1.200 27 C -0.241 4.241 28 C -0.075 4.075 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.161 0.839 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.022 0.978 49 H 0.022 0.978 50 H 0.065 0.935 51 H 0.107 0.893 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.638 -2.608 24.705 25.474 hybrid contribution -0.098 1.421 1.042 1.764 sum -5.736 -1.187 25.746 26.404 Atomic orbital electron populations 1.21763 0.95566 1.01672 1.01757 1.21572 0.96153 0.95769 1.01537 1.21812 0.94085 0.96302 0.97854 0.91654 1.22429 0.97861 0.98540 0.96464 1.22485 0.94455 0.97935 1.01119 1.23055 0.98106 0.99451 0.98270 1.22320 0.95223 0.97256 0.87616 0.90759 1.60642 1.27670 1.09609 1.33686 1.20608 0.89542 0.97966 0.92553 1.19556 1.04363 0.97737 0.94085 1.20932 0.95703 0.93210 0.98026 1.20786 1.09067 1.03569 0.90306 1.18220 0.92710 0.90935 0.87543 1.46758 1.60453 1.22697 1.03882 1.21605 0.95958 0.84485 1.02347 1.18883 0.94853 0.93137 0.79995 1.22598 1.04929 1.33306 1.04528 0.94037 1.27278 1.02527 0.98699 0.94222 1.70939 1.07617 1.38176 1.40096 0.82950 0.72488 0.75015 0.75894 1.20464 1.19424 1.20041 1.20739 1.07226 0.97337 0.98781 1.20778 0.96737 0.98406 0.91593 0.92532 0.92049 0.93559 0.93091 0.91442 0.91732 0.90932 0.91962 0.90851 0.90733 0.91856 0.83921 0.91142 0.93523 0.83784 0.84820 0.92820 0.90080 0.92717 0.97848 0.97819 0.93465 0.89286 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.77 71.98 0.70 -1.39 16 2 C -0.11 -1.70 5.06 30.59 0.15 -1.54 16 3 C -0.08 -1.31 2.72 -10.07 -0.03 -1.33 16 4 H 0.06 1.32 7.92 -2.39 -0.02 1.30 16 5 C -0.12 -1.48 5.54 31.67 0.18 -1.31 16 6 C -0.12 -1.53 6.91 31.93 0.22 -1.31 16 7 C -0.15 -2.01 6.23 31.71 0.20 -1.82 16 8 C 0.09 1.43 2.88 45.64 0.13 1.56 16 9 H 0.07 1.29 7.35 -2.39 -0.02 1.27 16 10 N -0.69 -14.12 6.10 -491.81 -3.00 -17.12 16 11 C 0.12 2.69 5.61 85.56 0.48 3.17 16 12 C -0.15 -4.47 5.39 -19.84 -0.11 -4.58 16 13 C -0.06 -1.65 9.69 22.25 0.22 -1.44 16 14 C -0.21 -7.08 9.21 22.40 0.21 -6.87 16 15 C 0.21 8.77 6.55 38.21 0.25 9.02 16 16 N -0.63 -28.24 2.99 -726.55 -2.17 -30.42 16 17 C 0.10 3.50 10.19 127.77 1.30 4.80 16 18 C 0.25 13.55 4.23 85.64 0.36 13.91 16 19 C -0.61 -35.49 9.39 25.60 0.24 -35.25 16 20 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 21 C -0.03 -1.67 5.46 84.65 0.46 -1.20 16 22 N -0.93 -57.26 13.65 21.45 0.29 -56.96 16 23 Si 1.12 50.97 29.90 68.60 2.05 53.03 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 C -0.22 -9.45 9.21 22.40 0.21 -9.24 16 28 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.74 7.51 -2.39 -0.02 0.73 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.89 8.01 -2.39 -0.02 0.87 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.83 7.76 -2.39 -0.02 0.81 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.88 7.72 -2.38 -0.02 0.86 16 40 H 0.34 6.88 8.44 -89.70 -0.76 6.13 16 41 H 0.07 1.60 8.01 -2.38 -0.02 1.58 16 42 H 0.05 0.89 7.80 -2.39 -0.02 0.87 16 43 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 44 H 0.13 3.79 6.14 -2.91 -0.02 3.77 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 2.42 6.20 -2.39 -0.01 2.40 16 47 H 0.05 2.03 8.07 -2.39 -0.02 2.01 16 48 H 0.00 0.20 7.94 -2.39 -0.02 0.18 16 49 H 0.00 0.23 6.05 -2.38 -0.01 0.21 16 50 H 0.26 15.87 7.22 -92.71 -0.67 15.20 16 51 H 0.09 4.47 6.14 -2.91 -0.02 4.45 16 52 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -65.64 405.03 2.78 -62.86 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.22 Total: 25.20 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 5.39 Total: -36.59 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -4.88 Total: -104.50 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.03 kcal Total: -65.64 2.78 -62.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154134229.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.080 kcal (2) G-P(sol) polarization free energy of solvation -65.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds