Wall clock time and date at job start Tue Mar 31 2020 11:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47276 * 2 1 4 4 H 1.09005 * 110.05256 * 53.58597 * 3 2 1 5 5 C 1.53872 * 110.03563 * 292.17286 * 3 2 1 6 6 C 1.54270 * 106.59523 * 240.71467 * 5 3 2 7 7 C 1.54889 * 104.19465 * 336.38856 * 6 5 3 8 8 C 1.54262 * 110.03195 * 174.99974 * 3 2 1 9 9 H 1.08998 * 110.59834 * 24.16456 * 8 3 2 10 10 N 1.46898 * 110.48643 * 261.57612 * 8 3 2 11 11 C 1.46902 * 110.99982 * 158.77150 * 10 8 3 12 12 C 1.50706 * 109.47437 * 179.97438 * 11 10 8 13 13 C 1.38283 * 119.92045 * 89.99840 * 12 11 10 14 14 C 1.38110 * 120.07007 * 180.02562 * 13 12 11 15 15 C 1.38911 * 119.92610 * 359.97438 * 14 13 12 16 16 N 1.39675 * 120.07168 * 179.97438 * 15 14 13 17 17 C 1.46499 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.46499 * 119.99822 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47219 * 89.99835 * 18 16 15 20 20 H 1.07996 * 119.99587 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00012 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99655 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99994 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46889 * 90.00281 * 23 21 19 25 25 H 1.48510 * 109.46825 * 210.00042 * 23 21 19 26 26 H 1.48494 * 109.47200 * 329.99914 * 23 21 19 27 27 C 1.38909 * 119.85090 * 0.25797 * 15 14 13 28 28 C 1.38114 * 119.92453 * 359.50985 * 27 15 14 29 29 H 1.08999 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47082 * 299.99579 * 1 2 3 31 31 H 1.09002 * 109.47045 * 59.99757 * 1 2 3 32 32 H 1.09006 * 109.46588 * 240.00083 * 2 1 3 33 33 H 1.08994 * 109.47045 * 120.00599 * 2 1 3 34 34 H 1.08990 * 110.03788 * 121.42447 * 5 3 2 35 35 H 1.09004 * 110.07071 * 0.02562 * 5 3 2 36 36 H 1.09002 * 110.48531 * 217.70618 * 6 5 3 37 37 H 1.09008 * 110.59817 * 95.12077 * 6 5 3 38 38 H 1.09003 * 110.75487 * 279.62648 * 7 6 5 39 39 H 1.09001 * 110.91094 * 156.33346 * 7 6 5 40 40 H 1.00899 * 111.00022 * 282.72269 * 10 8 3 41 41 H 1.09000 * 109.46885 * 60.00022 * 11 10 8 42 42 H 1.08995 * 109.47172 * 299.99934 * 11 10 8 43 43 H 1.08003 * 119.96586 * 0.02713 * 13 12 11 44 44 H 1.08003 * 120.03111 * 179.97438 * 14 13 12 45 45 H 1.08996 * 109.47008 * 90.00201 * 17 16 15 46 46 H 1.08997 * 109.46865 * 209.99886 * 17 16 15 47 47 H 1.08998 * 109.47058 * 329.99399 * 17 16 15 48 48 H 1.08998 * 109.47416 * 210.00017 * 18 16 15 49 49 H 1.09008 * 109.47058 * 330.00616 * 18 16 15 50 50 H 0.97008 * 119.99482 * 180.02562 * 22 21 19 51 51 H 1.08001 * 120.04024 * 179.74717 * 27 15 14 52 52 H 1.07991 * 119.96226 * 180.23198 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9975 0.8240 5 6 1.7014 2.1214 -1.3387 6 6 3.0450 2.5271 -1.9792 7 6 4.0202 2.6342 -0.7807 8 6 3.5774 1.4594 0.1263 9 1 4.0018 0.5210 -0.2306 10 7 3.9762 1.7061 1.5185 11 6 5.3477 1.2403 1.7636 12 6 5.7210 1.5101 3.1986 13 6 5.4700 0.5560 4.1676 14 6 5.8103 0.8002 5.4837 15 6 6.4058 2.0055 5.8333 16 7 6.7507 2.2559 7.1634 17 6 6.4851 1.2465 8.1915 18 6 7.3781 3.5278 7.5305 19 6 6.3104 4.5316 7.8821 20 1 5.2687 4.2503 7.8363 21 6 6.6634 5.8093 8.2613 22 7 5.7316 6.6851 8.5686 23 14 8.4652 6.2965 8.3384 24 1 8.8884 6.8373 7.0218 25 1 8.6529 7.3347 9.3835 26 1 9.2863 5.1049 8.6712 27 6 6.6520 2.9636 4.8581 28 6 6.3135 2.7111 3.5431 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.0887 3.0057 -1.1645 35 1 1.1733 1.4238 -1.9888 36 1 2.9523 3.4893 -2.4829 37 1 3.3828 1.7623 -2.6787 38 1 3.8967 3.5872 -0.2662 39 1 5.0523 2.5035 -1.1060 40 1 3.8780 2.6819 1.7552 41 1 6.0347 1.7705 1.1040 42 1 5.4085 0.1700 1.5671 43 1 5.0075 -0.3811 3.8950 44 1 5.6137 0.0548 6.2400 45 1 7.3471 0.5858 8.2831 46 1 6.3023 1.7397 9.1461 47 1 5.6083 0.6633 7.9101 48 1 8.0314 3.3762 8.3897 49 1 7.9638 3.9000 6.6898 50 1 5.9800 7.5842 8.8350 51 1 7.1110 3.9035 5.1272 52 1 6.5081 3.4540 2.7839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154134349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:21 Heat of formation + Delta-G solvation = 11.541649 kcal Electronic energy + Delta-G solvation = -26146.567498 eV Core-core repulsion = 22723.700018 eV Total energy + Delta-G solvation = -3422.867480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.41874 -38.85850 -36.23531 -34.42061 -33.06574 -32.57625 -30.53214 -30.12028 -28.35083 -27.70534 -27.22906 -25.35507 -23.75736 -22.59034 -22.05467 -21.36485 -20.75589 -19.77415 -19.36341 -16.94541 -16.75105 -16.18528 -15.86366 -15.32531 -14.70779 -14.57488 -14.39816 -14.24775 -13.78576 -13.66123 -13.38854 -13.35240 -13.18377 -12.99665 -12.87179 -12.55980 -12.39355 -12.07070 -11.83587 -11.73610 -11.61208 -11.48462 -11.44692 -11.26189 -11.01580 -10.95675 -10.86255 -10.60950 -10.55739 -10.51839 -10.47244 -10.24281 -10.05419 -9.58866 -8.90616 -8.66426 -8.31944 -8.23285 -6.40878 -6.14978 -4.14937 2.07504 2.18787 3.20764 3.28704 3.29454 4.04445 4.14729 4.31600 4.39842 4.48597 4.57854 4.80774 4.98145 5.09182 5.15345 5.16572 5.20243 5.29084 5.31614 5.39093 5.46551 5.48530 5.55407 5.59011 5.60764 5.67225 5.72409 5.78914 5.80373 5.81702 5.91255 5.96079 6.01070 6.01273 6.02231 6.10450 6.21427 6.23912 6.31686 6.32963 6.38082 6.55901 6.74362 6.75230 7.00118 7.06096 7.18360 7.24399 7.48922 7.52349 7.54681 8.04817 8.34395 8.51214 8.93032 9.44892 10.98064 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.002582 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.540697 B =10843.745616 C =11427.802266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.082 4.082 4 H 0.079 0.921 5 C -0.122 4.122 6 C -0.121 4.121 7 C -0.157 4.157 8 C 0.088 3.912 9 H 0.080 0.920 10 N -0.678 5.678 11 C 0.116 3.884 12 C -0.169 4.169 13 C -0.051 4.051 14 C -0.219 4.219 15 C 0.241 3.759 16 N -0.612 5.612 17 C 0.099 3.901 18 C 0.221 3.779 19 C -0.534 4.534 20 H 0.076 0.924 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.872 3.128 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.188 4.188 28 C -0.067 4.067 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.344 0.656 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.036 0.964 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.265 0.735 51 H 0.127 0.873 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 -12.701 -18.312 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.101 4.101 4 H 0.097 0.903 5 C -0.160 4.160 6 C -0.159 4.159 7 C -0.197 4.197 8 C -0.023 4.023 9 H 0.098 0.902 10 N -0.308 5.308 11 C -0.012 4.012 12 C -0.172 4.172 13 C -0.070 4.070 14 C -0.242 4.242 15 C 0.135 3.865 16 N -0.317 5.317 17 C -0.045 4.045 18 C 0.099 3.901 19 C -0.573 4.573 20 H 0.095 0.905 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.699 3.301 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.190 1.190 27 C -0.210 4.210 28 C -0.086 4.086 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.163 0.837 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.145 0.855 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.229 -13.047 -17.747 22.429 hybrid contribution 1.308 1.281 -0.242 1.846 sum -2.921 -11.766 -17.989 21.693 Atomic orbital electron populations 1.21807 0.96207 1.01228 1.01747 1.21549 0.95469 0.96168 1.01784 1.21767 0.94813 0.96260 0.97289 0.90258 1.22249 0.97118 1.00139 0.96453 1.22253 0.95379 1.01004 0.97272 1.23244 0.99098 0.99686 0.97648 1.22515 0.94969 0.97442 0.87344 0.90173 1.60601 1.24295 1.25340 1.20520 1.20651 0.87999 0.99669 0.92876 1.19214 1.07260 0.96168 0.94590 1.20504 0.96695 0.97910 0.91909 1.20577 1.09036 0.97840 0.96705 1.17915 0.91194 0.92696 0.84744 1.46708 1.64006 1.17704 1.03330 1.21491 0.99259 0.91490 0.92293 1.19653 0.93726 0.81286 0.95402 1.21484 0.94726 0.95123 1.45934 0.90541 1.24902 0.97195 0.96279 0.94664 1.69907 1.32676 1.05037 1.45654 0.86915 0.85869 0.78904 0.78436 1.19926 1.20948 1.19026 1.20781 1.07852 1.00246 0.92138 1.20650 0.97064 0.95539 0.95377 0.93139 0.92658 0.92952 0.92610 0.91477 0.92022 0.91740 0.91994 0.91870 0.91283 0.91865 0.83702 0.95369 0.91294 0.87209 0.86796 0.94561 0.91286 0.92351 0.95464 0.95543 0.92514 0.85496 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.75 37.16 0.36 -0.85 16 2 C -0.11 -0.97 5.06 -26.73 -0.14 -1.11 16 3 C -0.08 -0.75 2.66 -89.51 -0.24 -0.99 16 4 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 5 C -0.12 -0.98 5.96 -25.61 -0.15 -1.13 16 6 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 7 C -0.16 -1.41 6.41 -24.74 -0.16 -1.57 16 8 C 0.09 0.85 2.69 -66.06 -0.18 0.67 16 9 H 0.08 0.78 7.59 -51.93 -0.39 0.39 16 10 N -0.68 -7.96 6.26 -106.24 -0.67 -8.62 16 11 C 0.12 1.42 5.65 -4.97 -0.03 1.39 16 12 C -0.17 -2.57 5.39 -104.59 -0.56 -3.13 16 13 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 14 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 15 C 0.24 4.80 6.55 -83.79 -0.55 4.26 16 16 N -0.61 -12.82 2.99 -181.00 -0.54 -13.36 16 17 C 0.10 1.70 10.19 59.85 0.61 2.31 16 18 C 0.22 5.19 3.98 -5.19 -0.02 5.17 16 19 C -0.53 -14.84 9.94 -34.44 -0.34 -15.19 16 20 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -26.99 13.96 55.43 0.77 -26.21 16 23 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 27 C -0.19 -3.71 9.21 -39.38 -0.36 -4.07 16 28 C -0.07 -1.12 9.69 -39.61 -0.38 -1.50 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.38 7.00 -51.93 -0.36 0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.48 6.87 -51.93 -0.36 0.12 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.07 0.66 7.82 -51.93 -0.41 0.26 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.34 4.27 8.29 -39.29 -0.33 3.94 16 41 H 0.03 0.33 8.06 -51.93 -0.42 -0.09 16 42 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 43 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 44 H 0.11 1.78 6.14 -52.48 -0.32 1.46 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 47 H 0.06 0.91 6.20 -51.93 -0.32 0.59 16 48 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 49 H 0.03 0.62 5.63 -51.92 -0.29 0.33 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 51 H 0.13 2.70 6.15 -52.49 -0.32 2.38 16 52 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -29.43 402.54 -11.58 -41.01 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -9.39 Total: 5.33 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -3.16 Total: -20.25 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.43 Total: -48.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.43 -11.58 -41.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154134349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.555 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds