Wall clock time and date at job start Tue Mar 31 2020 11:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47276 * 2 1 4 4 H 1.09005 * 110.05256 * 53.58597 * 3 2 1 5 5 C 1.53872 * 110.03563 * 292.17286 * 3 2 1 6 6 C 1.54270 * 106.59523 * 240.71467 * 5 3 2 7 7 C 1.54889 * 104.19465 * 336.38856 * 6 5 3 8 8 C 1.54262 * 110.03195 * 174.99974 * 3 2 1 9 9 H 1.08998 * 110.59834 * 24.16456 * 8 3 2 10 10 N 1.46898 * 110.48643 * 261.57612 * 8 3 2 11 11 C 1.46902 * 110.99982 * 158.77150 * 10 8 3 12 12 C 1.50706 * 109.47437 * 179.97438 * 11 10 8 13 13 C 1.38283 * 119.92045 * 89.99840 * 12 11 10 14 14 C 1.38110 * 120.07007 * 180.02562 * 13 12 11 15 15 C 1.38911 * 119.92610 * 359.97438 * 14 13 12 16 16 N 1.39675 * 120.07168 * 179.97438 * 15 14 13 17 17 C 1.46499 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.46499 * 119.99822 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47219 * 89.99835 * 18 16 15 20 20 H 1.07996 * 119.99587 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00012 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99655 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99994 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46889 * 90.00281 * 23 21 19 25 25 H 1.48510 * 109.46825 * 210.00042 * 23 21 19 26 26 H 1.48494 * 109.47200 * 329.99914 * 23 21 19 27 27 C 1.38909 * 119.85090 * 0.25797 * 15 14 13 28 28 C 1.38114 * 119.92453 * 359.50985 * 27 15 14 29 29 H 1.08999 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47082 * 299.99579 * 1 2 3 31 31 H 1.09002 * 109.47045 * 59.99757 * 1 2 3 32 32 H 1.09006 * 109.46588 * 240.00083 * 2 1 3 33 33 H 1.08994 * 109.47045 * 120.00599 * 2 1 3 34 34 H 1.08990 * 110.03788 * 121.42447 * 5 3 2 35 35 H 1.09004 * 110.07071 * 0.02562 * 5 3 2 36 36 H 1.09002 * 110.48531 * 217.70618 * 6 5 3 37 37 H 1.09008 * 110.59817 * 95.12077 * 6 5 3 38 38 H 1.09003 * 110.75487 * 279.62648 * 7 6 5 39 39 H 1.09001 * 110.91094 * 156.33346 * 7 6 5 40 40 H 1.00899 * 111.00022 * 282.72269 * 10 8 3 41 41 H 1.09000 * 109.46885 * 60.00022 * 11 10 8 42 42 H 1.08995 * 109.47172 * 299.99934 * 11 10 8 43 43 H 1.08003 * 119.96586 * 0.02713 * 13 12 11 44 44 H 1.08003 * 120.03111 * 179.97438 * 14 13 12 45 45 H 1.08996 * 109.47008 * 90.00201 * 17 16 15 46 46 H 1.08997 * 109.46865 * 209.99886 * 17 16 15 47 47 H 1.08998 * 109.47058 * 329.99399 * 17 16 15 48 48 H 1.08998 * 109.47416 * 210.00017 * 18 16 15 49 49 H 1.09008 * 109.47058 * 330.00616 * 18 16 15 50 50 H 0.97008 * 119.99482 * 180.02562 * 22 21 19 51 51 H 1.08001 * 120.04024 * 179.74717 * 27 15 14 52 52 H 1.07991 * 119.96226 * 180.23198 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9975 0.8240 5 6 1.7014 2.1214 -1.3387 6 6 3.0450 2.5271 -1.9792 7 6 4.0202 2.6342 -0.7807 8 6 3.5774 1.4594 0.1263 9 1 4.0018 0.5210 -0.2306 10 7 3.9762 1.7061 1.5185 11 6 5.3477 1.2403 1.7636 12 6 5.7210 1.5101 3.1986 13 6 5.4700 0.5560 4.1676 14 6 5.8103 0.8002 5.4837 15 6 6.4058 2.0055 5.8333 16 7 6.7507 2.2559 7.1634 17 6 6.4851 1.2465 8.1915 18 6 7.3781 3.5278 7.5305 19 6 6.3104 4.5316 7.8821 20 1 5.2687 4.2503 7.8363 21 6 6.6634 5.8093 8.2613 22 7 5.7316 6.6851 8.5686 23 14 8.4652 6.2965 8.3384 24 1 8.8884 6.8373 7.0218 25 1 8.6529 7.3347 9.3835 26 1 9.2863 5.1049 8.6712 27 6 6.6520 2.9636 4.8581 28 6 6.3135 2.7111 3.5431 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.0887 3.0057 -1.1645 35 1 1.1733 1.4238 -1.9888 36 1 2.9523 3.4893 -2.4829 37 1 3.3828 1.7623 -2.6787 38 1 3.8967 3.5872 -0.2662 39 1 5.0523 2.5035 -1.1060 40 1 3.8780 2.6819 1.7552 41 1 6.0347 1.7705 1.1040 42 1 5.4085 0.1700 1.5671 43 1 5.0075 -0.3811 3.8950 44 1 5.6137 0.0548 6.2400 45 1 7.3471 0.5858 8.2831 46 1 6.3023 1.7397 9.1461 47 1 5.6083 0.6633 7.9101 48 1 8.0314 3.3762 8.3897 49 1 7.9638 3.9000 6.6898 50 1 5.9800 7.5842 8.8350 51 1 7.1110 3.9035 5.1272 52 1 6.5081 3.4540 2.7839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154134349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:21 Heat of formation + Delta-G solvation = -3.564250 kcal Electronic energy + Delta-G solvation = -26147.222539 eV Core-core repulsion = 22723.700018 eV Total energy + Delta-G solvation = -3423.522521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55538 -39.86645 -37.61536 -35.52130 -34.64333 -33.73771 -31.98435 -31.38281 -30.08080 -28.38608 -28.23061 -26.69246 -25.16744 -23.62994 -23.16387 -22.85105 -21.51339 -21.04128 -20.23739 -19.08653 -18.18202 -17.05936 -16.87332 -16.63622 -16.23475 -15.75451 -15.63684 -15.19145 -15.08154 -14.90218 -14.72324 -14.39772 -14.35061 -14.06936 -13.95276 -13.93728 -13.46254 -13.36895 -13.17125 -13.11168 -12.77964 -12.61155 -12.54591 -12.41637 -12.18244 -12.07803 -11.99686 -11.90027 -11.76170 -11.57385 -11.43877 -11.37274 -11.23119 -11.18102 -10.83189 -10.41185 -9.67276 -9.15489 -8.34167 -7.91230 -6.39536 0.70072 0.83109 1.33480 1.34274 1.45068 2.29695 2.54005 2.99478 3.01496 3.47749 3.70580 3.80613 4.01285 4.06424 4.15367 4.23561 4.32251 4.38371 4.41459 4.49103 4.52543 4.54787 4.61247 4.64121 4.69229 4.75503 4.79472 4.81327 4.82737 4.84790 4.88453 4.90317 4.98733 5.06059 5.08263 5.09595 5.17448 5.25579 5.30002 5.31163 5.33821 5.44936 5.45870 5.51709 5.59865 5.61361 5.65415 5.92616 6.09205 6.20478 6.30790 6.51055 6.59392 6.69467 6.86922 7.25991 8.83366 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.002582 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.540697 B =10843.745616 C =11427.802266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.081 4.081 4 H 0.060 0.940 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.156 4.156 8 C 0.090 3.910 9 H 0.086 0.914 10 N -0.686 5.686 11 C 0.122 3.878 12 C -0.157 4.157 13 C -0.050 4.050 14 C -0.217 4.217 15 C 0.211 3.789 16 N -0.629 5.629 17 C 0.097 3.903 18 C 0.232 3.768 19 C -0.536 4.536 20 H 0.024 0.976 21 C 0.012 3.988 22 N -0.946 5.946 23 Si 0.947 3.053 24 H -0.265 1.265 25 H -0.280 1.280 26 H -0.243 1.243 27 C -0.216 4.216 28 C -0.069 4.069 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.338 0.662 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.029 0.971 50 H 0.268 0.732 51 H 0.100 0.900 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 -14.627 -20.444 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.100 4.100 4 H 0.078 0.922 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.195 4.195 8 C -0.020 4.020 9 H 0.104 0.896 10 N -0.316 5.316 11 C -0.006 4.006 12 C -0.160 4.160 13 C -0.069 4.069 14 C -0.240 4.240 15 C 0.107 3.893 16 N -0.337 5.337 17 C -0.046 4.046 18 C 0.109 3.891 19 C -0.575 4.575 20 H 0.042 0.958 21 C -0.186 4.186 22 N -0.586 5.586 23 Si 0.769 3.231 24 H -0.190 1.190 25 H -0.205 1.205 26 H -0.167 1.167 27 C -0.239 4.239 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.156 0.844 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.077 0.923 51 H 0.119 0.881 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.233 -15.021 -19.906 25.146 hybrid contribution 0.831 1.814 0.316 2.020 sum -2.402 -13.207 -19.591 23.748 Atomic orbital electron populations 1.21794 0.95770 1.01662 1.01639 1.21514 0.95852 0.95619 1.01643 1.21732 0.94386 0.96553 0.97318 0.92195 1.22222 0.97367 1.00156 0.95887 1.22250 0.94765 1.01627 0.96926 1.23205 0.99605 0.98820 0.97889 1.22543 0.95246 0.97932 0.86268 0.89579 1.60594 1.23885 1.24948 1.22134 1.20626 0.88476 1.00693 0.90813 1.19566 1.05097 0.95027 0.96292 1.20875 0.95850 0.99006 0.91208 1.20824 1.08051 0.97097 0.98012 1.18202 0.92765 0.93993 0.84371 1.46694 1.65088 1.17406 1.04541 1.21630 1.01050 0.91058 0.90853 1.19333 0.92465 0.81781 0.95499 1.21663 0.93492 0.96635 1.45674 0.95802 1.25877 1.02655 0.96050 0.94052 1.70074 1.35548 1.05686 1.47316 0.85730 0.79373 0.79210 0.78775 1.19013 1.20525 1.16662 1.20781 1.09650 0.99670 0.93819 1.20845 0.96755 0.96708 0.94512 0.92447 0.93683 0.92158 0.91514 0.92757 0.92316 0.90686 0.91559 0.90857 0.92266 0.91540 0.84387 0.94459 0.89845 0.84403 0.85095 0.91964 0.92594 0.90882 0.94648 0.95311 0.92313 0.88146 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.75 71.98 0.70 -1.48 16 2 C -0.11 -1.69 5.06 30.60 0.15 -1.53 16 3 C -0.08 -1.37 2.66 -10.07 -0.03 -1.39 16 4 H 0.06 1.25 8.04 -2.38 -0.02 1.23 16 5 C -0.12 -1.67 5.96 31.32 0.19 -1.49 16 6 C -0.12 -1.59 6.83 31.67 0.22 -1.37 16 7 C -0.16 -2.51 6.41 31.88 0.20 -2.30 16 8 C 0.09 1.57 2.69 45.99 0.12 1.69 16 9 H 0.09 1.43 7.59 -2.39 -0.02 1.41 16 10 N -0.69 -14.97 6.26 -490.04 -3.07 -18.03 16 11 C 0.12 2.67 5.65 85.56 0.48 3.16 16 12 C -0.16 -4.48 5.39 -19.84 -0.11 -4.59 16 13 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16 14 C -0.22 -7.23 9.21 22.40 0.21 -7.03 16 15 C 0.21 8.47 6.55 38.21 0.25 8.72 16 16 N -0.63 -26.69 2.99 -726.57 -2.17 -28.86 16 17 C 0.10 3.29 10.19 127.77 1.30 4.60 16 18 C 0.23 11.10 3.98 85.63 0.34 11.44 16 19 C -0.54 -31.11 9.94 25.60 0.25 -30.86 16 20 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 21 C 0.01 0.67 5.47 84.65 0.46 1.14 16 22 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 23 Si 0.95 43.15 27.47 68.60 1.88 45.04 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 27 C -0.22 -8.77 9.21 22.40 0.21 -8.56 16 28 C -0.07 -2.28 9.69 22.25 0.22 -2.06 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.77 7.00 -2.39 -0.02 0.75 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.91 6.87 -2.38 -0.02 0.90 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 1.07 7.82 -2.39 -0.02 1.05 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.34 8.09 8.29 -89.69 -0.74 7.35 16 41 H 0.04 0.77 8.06 -2.39 -0.02 0.75 16 42 H 0.08 1.63 8.02 -2.39 -0.02 1.61 16 43 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.13 3.82 6.14 -2.91 -0.02 3.80 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 47 H 0.07 2.21 6.20 -2.39 -0.01 2.19 16 48 H 0.04 1.63 7.13 -2.39 -0.02 1.61 16 49 H 0.03 1.37 5.63 -2.38 -0.01 1.35 16 50 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 51 H 0.10 4.51 6.15 -2.91 -0.02 4.49 16 52 H 0.12 3.57 8.06 -2.92 -0.02 3.54 16 Total: -1.00 -66.50 402.54 2.41 -64.09 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.08 Total: 29.96 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 5.39 Total: -33.15 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.94 Total: -105.94 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Total: -66.50 2.41 -64.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154134349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.527 kcal (2) G-P(sol) polarization free energy of solvation -66.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds